AT5G56660

IAA-amino acid

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
22933267 .. 22935316
2050 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G56660.1

Sequence Viewer

Length: 1320 bp
ATGGCTCTAAACAAGCTCCTCAGTTTGACTTTCCAACTACTCCTTTTTCTACTTAGTGTTTCATCGGAATCTCCATGGATCGCCGAAGATACGTCTCAAATCCAGACGAAGCTCCTCGAATTCGCGAAGAGTCCGGAGGTCTTCGATTGGATGGTGAAAATCAGAAGGAAAATCCACGAGAATCCGGAGCTTGGTTACGAAGAACTCGAGACCAGTAAACTCATTAGGTCGGAGCTGGAACTTATCGGAATCAAGTATAGGTATCCTGTAGCTATCACCGGTGTTATCGGATATATCGGCACCGGAGAACCGCCATTCGTCGCCCTGAGAGCTGATATGGATGCTTTGCCTATTCAGGAAGGTGTTGAGTGGGAGCACAAGAGCAAAATCGCTGGTAAAATGCATGCTTGCGGACATGATGGTCATGTTACTATGCTTCTTGGGGCTGCAAAGATACTTCATGAACATCGCCACCATTTGCAGGGAACTGTGGTGCTTATCTTTCAACCAGCTGAGGAAGGTTTGAGTGGAGCAAAGAAGATGAGAGAAGAAGGAGCGTTGAAGAACGTCGAAGCTATTTTCGGGATACATCTTTCTGCCCGGATTCCCTTTGGGAAAGCCGCTTCACGTGCAGGTTCATTTTTGGCTGGAGCTGGAGTCTTCGAGGCTGTAATCACTGGGAAAGGAGGTCATGCTGCCATCCCTCAGCATACTATAGATCCTGTTGTTGCAGCCTCAAGCATCGTCCTCAGTCTTCAACAATTGGTTTCACGTGAAACTGACCCTTTGGATTCAAAGGTGGTCACAGTTTCTAAGGTTAATGGAGGCAATGCTTTTAATGTCATCCCTGATTCAATCACCATAGGAGGAACTCTTCGAGCCTTTACCGGATTTACTCAGCTTCAACAGAGAGTCAAAGAGGTGATTACCAAGCAAGCAGCCGTTCACCGATGCAATGCGTCCGTTAATCTAACACCAAACGGTAGAGAACCAATGCCACCAACAGTGAACAACAAGGACTTGTACAAGCAATTCAAGAAGGTGGTTAGAGATTTGTTGGGTCAAGAAGCTTTTGTGGAAGCAGCACCTGTAATGGGATCCGAAGACTTCTCATACTTTGCAGAAACAATCCCGGGCCATTTCTCTCTACTGGGAATGCAAGATGAGACCAACGGGTATGCATCGTCTCATTCACCACTCTATAGAATCAACGAGGATGTGCTTCCGTACGGTGCTGCAATCCATGCATCGATGGCAGTACAGTACCTCAAAGAGAAGGCTTCTAAAGGTTCTGTCTCAGGCTTTCATGAAGAACTCTAA

Protein Analysis

439

Amino Acids

47.86

Weight (kDa)

6.39

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M20 PF01546 108 - 419 1.4e-43 Peptidase family M20/M25/M40
M20_dimer PF07687 217 - 311 3.1e-09 Peptidase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010736)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 420
Acc36I ACCTGC 1 cut(s) 623
AccB1I GGYRCC 1 cut(s) 299
AccII CGCG 1 cut(s) 125
AccIII TCCGGA 2 cut(s) 133, 184
AciI CCGC 3 cut(s) 311, 411, 621
AclWI GGATC 4 cut(s) 86, 713, 1092, 1105
AcsI RAATTY 1 cut(s) 119
AcvI CACGTG 2 cut(s) 629, 773
AfaI GTAC 4 cut(s) 1025, 1229, 1260, 1265
AfiI CCNNNNNNNGG 3 cut(s) 191, 481, 1094
AgeI ACCGGT 1 cut(s) 278
AgsI TTSAA 7 cut(s) 506, 562, 758, 795, 855, 905, 1036
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 5 cut(s) 99, 203, 1160, 1191, 1300
AlwI GGATC 4 cut(s) 86, 713, 1092, 1105
AlwNI CAGNNNCTG 1 cut(s) 1088
Ama87I CYCGRG 2 cut(s) 206, 1132
Aor13HI TCCGGA 2 cut(s) 133, 184
AoxI GGCC 1 cut(s) 1135
ApeKI GCWGC 6 cut(s) 446, 695, 731, 938, 1082, 1235
ApoI RAATTY 1 cut(s) 119
AsiGI ACCGGT 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 1135
AsuC2I CCSGG 3 cut(s) 601, 1133, 1134
AsuHPI GGTGA 6 cut(s) 166, 268, 850, 934, 938, 1185
AvaI CYCGRG 2 cut(s) 206, 1132
BamHI GGATCC 1 cut(s) 1097
BanI GGYRCC 1 cut(s) 299
BauI CACGAG 1 cut(s) 176
BbrPI CACGTG 2 cut(s) 629, 773
BbsI GAAGAC 4 cut(s) 133, 652, 746, 1110
Bbv12I GWGCWC 1 cut(s) 378
BbvCI CCTCAGC 2 cut(s) 513, 705
BbvI GCAGC 6 cut(s) 433, 682, 743, 950, 1094, 1222
BccI CCATC 4 cut(s) 145, 413, 707, 1246
BceAI ACGGC 1 cut(s) 926
BciVI GTATCC 2 cut(s) 273, 579
BcnI CCSGG 3 cut(s) 601, 1133, 1134
BcoDI GTCTC 5 cut(s) 99, 203, 1160, 1191, 1300
BfmI CTRYAG 3 cut(s) 267, 714, 1201
BfuAI ACCTGC 1 cut(s) 623
BfuI GTATCC 2 cut(s) 273, 579
BisI GCNGC 7 cut(s) 447, 621, 696, 732, 939, 1083, 1236
BlsI GCNGC 7 cut(s) 448, 622, 697, 733, 940, 1084, 1237
Bme1390I CCNGG 3 cut(s) 601, 1133, 1134
BmeT110I CYCGRG 2 cut(s) 206, 1132
BmgT120I GGNCC 1 cut(s) 1135
BmiI GGNNCC 2 cut(s) 301, 1099
BmrFI CCNGG 3 cut(s) 601, 1133, 1134
BmrI ACTGGG 2 cut(s) 687, 1160
BmsI GCATC 5 cut(s) 331, 750, 941, 1190, 1256
BmuI ACTGGG 2 cut(s) 687, 1160
BpiI GAAGAC 4 cut(s) 133, 652, 746, 1110
BpmI CTGGAG 2 cut(s) 669, 675
Bpu10I CCTNAGC 2 cut(s) 513, 705
BpuEI CTTGAG 1 cut(s) 721
BpuMI CCSGG 3 cut(s) 601, 1133, 1134
Bsa29I ATCGAT 1 cut(s) 1250
BsaAI YACGTR 2 cut(s) 629, 773
BsaI GGTCTC 2 cut(s) 203, 1160
BsaJI CCNNGG 2 cut(s) 74, 1132
BsaWI WCCGGW 5 cut(s) 133, 184, 278, 302, 887
BsaXI ACNNNNNCTCC 2 cut(s) 642, 672
Bsc4I CCNNNNNNNGG 3 cut(s) 191, 481, 1094
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 3 cut(s) 213, 682, 1155
Bse3DI GCAATG 2 cut(s) 835, 961
BseAI TCCGGA 2 cut(s) 133, 184
BseCI ATCGAT 1 cut(s) 1250
BseDI CCNNGG 2 cut(s) 74, 1132
BseGI GGATG 5 cut(s) 156, 346, 699, 843, 1222
BseLI CCNNNNNNNGG 3 cut(s) 191, 481, 1094
BseMI GCAATG 2 cut(s) 835, 961
BseMII CTCAG 7 cut(s) 34, 317, 504, 719, 763, 911, 1311
BseNI ACTGG 3 cut(s) 213, 682, 1155
BseRI GAGGAG 2 cut(s) 8, 104
BseXI GCAGC 6 cut(s) 433, 682, 743, 950, 1094, 1222
BsgI GTGCAG 1 cut(s) 651
Bsh1236I CGCG 1 cut(s) 125
BshFI GGCC 1 cut(s) 1137
BshNI GGYRCC 1 cut(s) 299
BshTI ACCGGT 1 cut(s) 278
BshVI ATCGAT 1 cut(s) 1250
BsiHKAI GWGCWC 1 cut(s) 378
BsiHKCI CYCGRG 2 cut(s) 206, 1132
BsiSI CCGG 7 cut(s) 134, 185, 279, 303, 601, 888, 1133
BsiWI CGTACG 1 cut(s) 1227
BslI CCNNNNNNNGG 3 cut(s) 191, 481, 1094
BsmAI GTCTC 5 cut(s) 99, 203, 1160, 1191, 1300
BsmBI CGTCTC 2 cut(s) 99, 1191
BsmI GAATGC 1 cut(s) 1161
BsnI GGCC 1 cut(s) 1137
Bso31I GGTCTC 2 cut(s) 203, 1160
BsoBI CYCGRG 2 cut(s) 206, 1132
Bsp1286I GDGCHC 1 cut(s) 378
Bsp13I TCCGGA 2 cut(s) 133, 184
Bsp1407I TGTACA 1 cut(s) 1023
Bsp143I GATC 3 cut(s) 78, 718, 1097
Bsp19I CCATGG 1 cut(s) 74
Bsp68I TCGCGA 1 cut(s) 125
BspACI CCGC 3 cut(s) 311, 411, 621
BspANI GGCC 1 cut(s) 1137
BspCNI CTCAG 7 cut(s) 33, 318, 505, 718, 762, 910, 1310
BspDI ATCGAT 1 cut(s) 1250
BspEI TCCGGA 2 cut(s) 133, 184
BspFNI CGCG 1 cut(s) 125
BspHI TCATGA 2 cut(s) 460, 1306
BspLI GGNNCC 2 cut(s) 301, 1099
BspMI ACCTGC 1 cut(s) 623
BspPI GGATC 4 cut(s) 86, 713, 1092, 1105
BspT107I GGYRCC 1 cut(s) 299
BspTNI GGTCTC 2 cut(s) 203, 1160
BsrDI GCAATG 2 cut(s) 835, 961
BsrFI RCCGGY 1 cut(s) 278
BsrGI TGTACA 1 cut(s) 1023
BsrI ACTGG 3 cut(s) 213, 682, 1155
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 2 cut(s) 74, 1132
BssMI GATC 3 cut(s) 78, 718, 1097
BssSI CACGAG 1 cut(s) 176
BssT1I CCWWGG 1 cut(s) 74
Bst2BI CACGAG 1 cut(s) 176
Bst4CI ACNGT 6 cut(s) 490, 808, 983, 1006, 1232, 1263
Bst6I CTCTTC 2 cut(s) 122, 879
BstAPI GCANNNNNTGC 1 cut(s) 1244
BstAUI TGTACA 1 cut(s) 1023
BstBAI YACGTR 2 cut(s) 629, 773
BstC8I GCNNGC 3 cut(s) 405, 409, 936
BstDEI CTNAG 9 cut(s) 20, 53, 326, 513, 705, 749, 813, 897, 1297
BstDSI CCRYGG 1 cut(s) 74
BstF5I GGATG 5 cut(s) 156, 346, 699, 843, 1222
BstFNI CGCG 1 cut(s) 125
BstKTI GATC 3 cut(s) 81, 721, 1100
BstMAI GTCTC 5 cut(s) 99, 203, 1160, 1191, 1300
BstMBI GATC 3 cut(s) 78, 718, 1097
BstMWI GCNNNNNNNGC 4 cut(s) 329, 629, 1244, 1253
BstNSI RCATGY 1 cut(s) 407
BstSCI CCNGG 3 cut(s) 599, 1131, 1132
BstSFI CTRYAG 3 cut(s) 267, 714, 1201
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 6 cut(s) 433, 682, 743, 950, 1094, 1222
BstV2I GAAGAC 4 cut(s) 133, 652, 746, 1110
BstX2I RGATCY 2 cut(s) 718, 1097
BstYI RGATCY 2 cut(s) 718, 1097
Bsu15I ATCGAT 1 cut(s) 1250
BsuI GTATCC 2 cut(s) 273, 579
BsuRI GGCC 1 cut(s) 1137
BsuTUI ATCGAT 1 cut(s) 1250
BtgI CCRYGG 1 cut(s) 74
BtgZI GCGATG 1 cut(s) 452
BtsCI GGATG 5 cut(s) 156, 346, 699, 843, 1222
BtsIMutI CAGTG 2 cut(s) 675, 1011
BtuMI TCGCGA 1 cut(s) 125
BveI ACCTGC 1 cut(s) 623
Cac8I GCNNGC 3 cut(s) 405, 409, 936
CaiI CAGNNNCTG 1 cut(s) 1088
CciI TCATGA 2 cut(s) 460, 1306
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 1135
Cfr9I CCCGGG 1 cut(s) 1132
ClaI ATCGAT 1 cut(s) 1250
CseI GACGC 1 cut(s) 948
Csp6I GTAC 4 cut(s) 1024, 1228, 1259, 1264
CspAI ACCGGT 1 cut(s) 278
CviAII CATG 8 cut(s) 75, 404, 416, 425, 461, 692, 1244, 1307
CviQI GTAC 4 cut(s) 1024, 1228, 1259, 1264
DdeI CTNAG 9 cut(s) 20, 53, 326, 513, 705, 749, 813, 897, 1297
DpnI GATC 3 cut(s) 80, 720, 1099
DpnII GATC 3 cut(s) 78, 718, 1097
DrdI GACNNNNNNGTC 1 cut(s) 420
DseDI GACNNNNNNGTC 1 cut(s) 420
Eam1104I CTCTTC 2 cut(s) 122, 879
EarI CTCTTC 2 cut(s) 122, 879
Eco130I CCWWGG 1 cut(s) 74
Eco31I GGTCTC 2 cut(s) 203, 1160
Eco72I CACGTG 2 cut(s) 629, 773
Eco88I CYCGRG 2 cut(s) 206, 1132
EcoRI GAATTC 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 74
EcoT22I ATGCAT 3 cut(s) 405, 1183, 1249
ErhI CCWWGG 1 cut(s) 74
Esp3I CGTCTC 2 cut(s) 99, 1191
FaeI CATG 8 cut(s) 78, 407, 419, 428, 464, 695, 1247, 1310
FatI CATG 8 cut(s) 74, 403, 415, 424, 460, 691, 1243, 1306
Fnu4HI GCNGC 7 cut(s) 447, 621, 696, 732, 939, 1083, 1236
FokI GGATG 5 cut(s) 163, 353, 686, 830, 1229
Fsp4HI GCNGC 7 cut(s) 447, 621, 696, 732, 939, 1083, 1236
GluI GCNGC 7 cut(s) 447, 621, 696, 732, 939, 1083, 1236
GsuI CTGGAG 2 cut(s) 669, 675
HaeIII GGCC 1 cut(s) 1137
HapII CCGG 7 cut(s) 134, 185, 279, 303, 601, 888, 1133
HgaI GACGC 1 cut(s) 948
Hin1II CATG 8 cut(s) 78, 407, 419, 428, 464, 695, 1247, 1310
HindIII AAGCTT 1 cut(s) 1068
HpaII CCGG 7 cut(s) 134, 185, 279, 303, 601, 888, 1133
HphI GGTGA 6 cut(s) 166, 268, 850, 934, 938, 1185
Hpy166II GTNNAC 3 cut(s) 218, 946, 1009
Hpy188I TCNGA 6 cut(s) 67, 164, 232, 248, 290, 1102
Hpy8I GTNNAC 3 cut(s) 218, 946, 1009
Hpy99I CGWCG 2 cut(s) 323, 572
HpyAV CCTTC 6 cut(s) 159, 353, 512, 545, 1033, 1270
HpyCH4III ACNGT 6 cut(s) 490, 808, 983, 1006, 1232, 1263
HpyCH4IV ACGT 4 cut(s) 92, 567, 628, 772
HpyF10VI GCNNNNNNNGC 4 cut(s) 329, 629, 1244, 1253
HpyF3I CTNAG 9 cut(s) 20, 53, 326, 513, 705, 749, 813, 897, 1297
HpySE526I ACGT 4 cut(s) 92, 567, 628, 772
Hsp92II CATG 8 cut(s) 78, 407, 419, 428, 464, 695, 1247, 1310
Kpn2I TCCGGA 2 cut(s) 133, 184
Kzo9I GATC 3 cut(s) 78, 718, 1097
LmnI GCTCC 8 cut(s) 21, 117, 187, 232, 373, 530, 554, 650
Lsp1109I GCAGC 6 cut(s) 433, 682, 743, 950, 1094, 1222
LweI GCATC 5 cut(s) 331, 750, 941, 1190, 1256
MaeII ACGT 4 cut(s) 92, 567, 628, 772
MaeIII GTNAC 3 cut(s) 194, 427, 802
MalI GATC 3 cut(s) 80, 720, 1099
MboI GATC 3 cut(s) 78, 718, 1097
MfeI CAATTG 1 cut(s) 761
MflI RGATCY 2 cut(s) 718, 1097
MhlI GDGCHC 1 cut(s) 378
MluCI AATT 3 cut(s) 119, 761, 1031
MlyI GAGTC 3 cut(s) 139, 666, 921
MmeI TCCRAC 2 cut(s) 58, 210
Mph1103I ATGCAT 3 cut(s) 405, 1183, 1249
MroI TCCGGA 2 cut(s) 133, 184
MseI TTAA 3 cut(s) 819, 837, 966
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 7 cut(s) 134, 185, 279, 303, 601, 888, 1133
MspR9I CCNGG 3 cut(s) 601, 1133, 1134
MunI CAATTG 1 cut(s) 761
Mva1269I GAATGC 1 cut(s) 1161
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 4 cut(s) 329, 629, 1244, 1253
NciI CCSGG 3 cut(s) 601, 1133, 1134
NcoI CCATGG 1 cut(s) 74
NdeII GATC 3 cut(s) 78, 718, 1097
NlaIII CATG 8 cut(s) 78, 407, 419, 428, 464, 695, 1247, 1310
NlaIV GGNNCC 2 cut(s) 301, 1099
NmuCI GTSAC 1 cut(s) 802
NruI TCGCGA 1 cut(s) 125
NsiI ATGCAT 3 cut(s) 405, 1183, 1249
NspI RCATGY 1 cut(s) 407
PaeI GCATGC 1 cut(s) 407
PaeR7I CTCGAG 1 cut(s) 206
PagI TCATGA 2 cut(s) 460, 1306
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PctI GAATGC 1 cut(s) 1161
PfeI GAWTC 7 cut(s) 68, 181, 249, 604, 791, 851, 1206
Pfl23II CGTACG 1 cut(s) 1227
PinAI ACCGGT 1 cut(s) 278
PkrI GCNGC 7 cut(s) 448, 622, 697, 733, 940, 1084, 1237
PleI GAGTC 3 cut(s) 138, 665, 920
PmaCI CACGTG 2 cut(s) 629, 773
PmlI CACGTG 2 cut(s) 629, 773
PpsI GAGTC 3 cut(s) 138, 665, 920
Ppu21I YACGTR 2 cut(s) 629, 773
PspCI CACGTG 2 cut(s) 629, 773
PspLI CGTACG 1 cut(s) 1227
PspN4I GGNNCC 2 cut(s) 301, 1099
PspPI GGNCC 1 cut(s) 1135
PstNI CAGNNNCTG 1 cut(s) 1088
PsuI RGATCY 2 cut(s) 718, 1097
PvuII CAGCTG 1 cut(s) 512
RruI TCGCGA 1 cut(s) 125
RsaI GTAC 4 cut(s) 1025, 1229, 1260, 1265
RsaNI GTAC 4 cut(s) 1024, 1228, 1259, 1264
SaqAI TTAA 3 cut(s) 819, 837, 966
SatI GCNGC 7 cut(s) 447, 621, 696, 732, 939, 1083, 1236
Sau3AI GATC 3 cut(s) 78, 718, 1097
Sau96I GGNCC 1 cut(s) 1135
SchI GAGTC 3 cut(s) 139, 666, 921
ScrFI CCNGG 3 cut(s) 601, 1133, 1134
SduI GDGCHC 1 cut(s) 378
SfaNI GCATC 5 cut(s) 331, 750, 941, 1190, 1256
SfcI CTRYAG 3 cut(s) 267, 714, 1201
Sfr274I CTCGAG 1 cut(s) 206
SgrAI CRCCGGYG 1 cut(s) 278
SlaI CTCGAG 1 cut(s) 206
SmaI CCCGGG 1 cut(s) 1134
SmlI CTYRAG 2 cut(s) 206, 736
SmoI CTYRAG 2 cut(s) 206, 736
SphI GCATGC 1 cut(s) 407
Sse9I AATT 3 cut(s) 119, 761, 1031
SsiI CCGC 3 cut(s) 311, 411, 621
StyD4I CCNGG 3 cut(s) 599, 1131, 1132
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 6 cut(s) 490, 808, 983, 1006, 1232, 1263
TaiI ACGT 4 cut(s) 95, 570, 631, 775
TaqI TCGA 7 cut(s) 117, 144, 207, 570, 663, 877, 1250
TasI AATT 3 cut(s) 119, 761, 1031
TatI WGTACW 2 cut(s) 1023, 1258
TauI GCSGC 1 cut(s) 623
TfiI GAWTC 7 cut(s) 68, 181, 249, 604, 791, 851, 1206
Tru1I TTAA 3 cut(s) 819, 837, 966
Tru9I TTAA 3 cut(s) 819, 837, 966
TscAI CASTG 2 cut(s) 682, 1011
TseFI GTSAC 1 cut(s) 802
TseI GCWGC 6 cut(s) 446, 695, 731, 938, 1082, 1235
Tsp45I GTSAC 1 cut(s) 802
TspDTI ATGAA 5 cut(s) 51, 449, 477, 627, 1295
TspGWI ACGGA 2 cut(s) 952, 1215
TspMI CCCGGG 1 cut(s) 1132
TspRI CASTG 2 cut(s) 682, 1011
XapI RAATTY 1 cut(s) 119
XceI RCATGY 1 cut(s) 407
XhoI CTCGAG 1 cut(s) 206
XmaI CCCGGG 1 cut(s) 1132
Zsp2I ATGCAT 3 cut(s) 405, 1183, 1249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.