Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009948

Physical Location & Seq

Genomic Coordinates Reverse (-)

2159680 .. 2161183

Gene Structure 1504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0026900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCACCACGATCTCTTCGTCATACTCCCAGACGGACTCCACGCAAGTTCTTTTATCTCTTACTGTTGATATTCGTGCCTGCATGTATATTTGGACTCTTTATAGATTACCGGAAAGTTACATATTTCCTCCGGCCACTTTGGGATACGCCTCCAGCTCCGTTCACATGGCTGCCACACTACTATGCAGAAAATGTAAGCATGGACCATCTCTGCCACCTTCATGGCTGGTCCGTGCGTGCCACTCCACGCCGTATTTTTGATGCCATCATCTTCAGCAATGAAATAGACTTGCTTGATATCAGATTTGCCTTTGCTGATGAAAAAATTGTGCACTATGTCTTTCCTGGCACAACTCGAAGCGGAGATTCACATGCAGACCCCTTCAAATTTGAGAGAATGCAACGTGCAGCTATGGATGATTTACTTCGGCAGGCAGGGATTTCCAATGGCGATGTCCTGATAATGGCGGATACTGATGAGATCCCTAGGCCGCAGACGTTGAAACTGTTGCAATGGTGTGATGGGATCCCTTCTAAACTGCATTTTGAGATGAAGCACTACCTGTACTCATTTGAGTTCCCAATGGACAGCATCTGGAAGACTGCATCTAATATCTACGGCCCGAATACCAGGTACATGCATTCGAGGCAAACTGATGACCTGCTCTCTGATGCGGGATGGCATTGTAGTTTTTGCTTTCGGCACATTGAGGAGTTTGTGTTCAAGATGGGAGCTTATAGCCACGCAGAGCGTGTGAGGCGGAGAGACTTTCTGGATTACAGAAGAATACAGAGGCTCATTTGTCATGGTGACGATCTTTTCGATATGTTACCTGAAGAGTTCACATTCAAGGACTTGATCAGGAAGATGGGATCGATTCCCAAATCAGCTTCTGCAATTACCCTTCCTGCTTATTTGATAAAGAATGCGGACAAGTTTAGGTACCTTCTCCCTGGAGGCTGTATCAGAGAGACTGGTAGCTCTTCTAATTTTCCTAAGGATAGTAGTTATTCTGATCCTAGTGTTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0008150 GO:0008152 GO:0009850 GO:0009987 GO:0010178 GO:0010179 GO:0010817 GO:0012505 GO:0016787 GO:0016810 GO:0042445 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

344

Amino Acids

40.3

Weight (kDa)

8.39

Isoelectric Point (pI)

54.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_17	PF04724	16 - 103	2.2e-35	Glycosyltransferase family 17
Glyco_transf_17	PF04724	102 - 325	1.1e-103	Glycosyltransferase family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26240
fragaria_vesca	FvH4_1g06740
malus_domestica	MD02G1072300.v1.1 MD15G1202100.v1.1
prunus_persica	Prupe.7G215100_v2.0.a1
pyrus_communis	pycom02g05630 pycom15g17950
rosa_chinensis	RchiOBHm_Chr2g0092481 RchiOBHm_Chr7g0226351
rosa_laevigata	RLG00000016317
rosa_multiflora	Rmu_sc0002503.1_g000015 Rmu_sc0002503.1_g000016 Rmu_sc0023787.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149060
rosa_rugosa	Rorug02G0026900 Rorug02G0027100
rosa_samantha	Rh2AG072800 Rh2BG073400 Rh2DG071400 Rh2DG071500
rosa_wichuraiana	Rw2G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	672
Acc65I	GGTACC	1 cut(s)	945
AccB1I	GGYRCC	2 cut(s)	4, 945
AciI	CCGC	6 cut(s)	363, 470, 494, 677, 763, 932
AclWI	GGATC	5 cut(s)	478, 523, 536, 883, 1013
AcoI	YGGCCR	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	389
AcuI	CTGAAG	2 cut(s)	259, 858
AfaI	GTAC	3 cut(s)	569, 638, 947
AfiI	CCNNNNNNNGG	1 cut(s)	466
AgsI	TTSAA	4 cut(s)	388, 505, 727, 853
AjnI	CCWGG	3 cut(s)	346, 632, 955
AloI	GAACNNNNNNTCC	2 cut(s)	707, 739
AluBI	AGCT	5 cut(s)	158, 413, 737, 893, 984
AluI	AGCT	5 cut(s)	158, 413, 737, 893, 984
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	2 cut(s)	762, 968
Alw44I	GTGCAC	1 cut(s)	332
AlwI	GGATC	5 cut(s)	478, 523, 536, 883, 1013
AlwNI	CAGNNNCTG	2 cut(s)	597, 896
AoxI	GGCC	3 cut(s)	134, 491, 622
ApaLI	GTGCAC	1 cut(s)	332
ApeKI	GCWGC	2 cut(s)	172, 410
ApoI	RAATTY	1 cut(s)	389
ArsI	GACNNNNNNTTYG	2 cut(s)	806, 838
Asp718I	GGTACC	1 cut(s)	945
AspA2I	CCTAGG	1 cut(s)	488
AspS9I	GGNCC	3 cut(s)	205, 231, 623
AsuHPI	GGTGA	1 cut(s)	824
AvaII	GGWCC	2 cut(s)	205, 231
AvrII	CCTAGG	1 cut(s)	488
AxyI	CCTNAGG	1 cut(s)	999
BaeGI	GKGCMC	1 cut(s)	336
BamHI	GGATCC	1 cut(s)	528
BanI	GGYRCC	2 cut(s)	4, 945
BbsI	GAAGAC	1 cut(s)	608
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	2 cut(s)	159, 422
BccI	CCATC	6 cut(s)	216, 275, 518, 675, 724, 865
BceAI	ACGGC	2 cut(s)	237, 637
BciT130I	CCWGG	3 cut(s)	348, 634, 957
BciVI	GTATCC	2 cut(s)	139, 466
BclI	TGATCA	1 cut(s)	861
BcoDI	GTCTC	2 cut(s)	762, 968
BfaI	CTAG	2 cut(s)	489, 1023
BfuAI	ACCTGC	1 cut(s)	672
BfuI	GTATCC	2 cut(s)	139, 466
BisI	GCNGC	3 cut(s)	173, 411, 494
BlnI	CCTAGG	1 cut(s)	488
BlsI	GCNGC	3 cut(s)	174, 412, 495
Bme1390I	CCNGG	3 cut(s)	348, 634, 957
Bme18I	GGWCC	2 cut(s)	205, 231
BmgT120I	GGNCC	3 cut(s)	205, 231, 623
BmiI	GGNNCC	3 cut(s)	6, 530, 947
BmrFI	CCNGG	3 cut(s)	348, 634, 957
BmsI	GCATC	4 cut(s)	253, 603, 617, 664
BpiI	GAAGAC	1 cut(s)	608
BpmI	CTGGAG	2 cut(s)	138, 978
Bsa29I	ATCGAT	1 cut(s)	878
BsaJI	CCNNGG	2 cut(s)	488, 955
BsaWI	WCCGGW	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	707, 737
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse1I	ACTGG	1 cut(s)	982
Bse21I	CCTNAGG	1 cut(s)	999
Bse3DI	GCAATG	2 cut(s)	286, 521
BseBI	CCWGG	3 cut(s)	348, 634, 957
BseCI	ATCGAT	1 cut(s)	878
BseDI	CCNNGG	2 cut(s)	488, 955
BseGI	GGATG	2 cut(s)	424, 686
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseMI	GCAATG	2 cut(s)	286, 521
BseNI	ACTGG	1 cut(s)	982
BseRI	GAGGAG	1 cut(s)	728
BseSI	GKGCMC	1 cut(s)	336
BseXI	GCAGC	2 cut(s)	159, 422
BsgI	GTGCAG	1 cut(s)	429
BshFI	GGCC	3 cut(s)	136, 493, 624
BshNI	GGYRCC	2 cut(s)	4, 945
BshVI	ATCGAT	1 cut(s)	878
BsiHKAI	GWGCWC	1 cut(s)	336
BsiSI	CCGG	2 cut(s)	112, 133
BslI	CCNNNNNNNGG	1 cut(s)	466
BsmAI	GTCTC	2 cut(s)	762, 968
BsmI	GAATGC	3 cut(s)	405, 643, 934
BsnI	GGCC	3 cut(s)	136, 493, 624
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	7 cut(s)	11, 483, 528, 817, 861, 875, 1018
BspACI	CCGC	6 cut(s)	363, 470, 494, 677, 763, 932
BspANI	GGCC	3 cut(s)	136, 493, 624
BspDI	ATCGAT	1 cut(s)	878
BspLI	GGNNCC	3 cut(s)	6, 530, 947
BspMI	ACCTGC	1 cut(s)	672
BspPI	GGATC	5 cut(s)	478, 523, 536, 883, 1013
BspQI	GCTCTTC	1 cut(s)	991
BspT107I	GGYRCC	2 cut(s)	4, 945
BsrDI	GCAATG	2 cut(s)	286, 521
BsrI	ACTGG	1 cut(s)	982
BssECI	CCNNGG	2 cut(s)	488, 955
BssMI	GATC	7 cut(s)	11, 483, 528, 817, 861, 875, 1018
BssT1I	CCWWGG	1 cut(s)	488
Bst2UI	CCWGG	3 cut(s)	348, 634, 957
Bst4CI	ACNGT	2 cut(s)	66, 510
Bst6I	CTCTTC	3 cut(s)	21, 834, 991
BstC8I	GCNNGC	3 cut(s)	81, 240, 435
BstDEI	CTNAG	1 cut(s)	999
BstF5I	GGATG	2 cut(s)	424, 686
BstKTI	GATC	7 cut(s)	14, 486, 531, 820, 864, 878, 1021
BstMAI	GTCTC	2 cut(s)	762, 968
BstMBI	GATC	7 cut(s)	11, 483, 528, 817, 861, 875, 1018
BstMWI	GCNNNNNNNGC	2 cut(s)	649, 760
BstNI	CCWGG	3 cut(s)	348, 634, 957
BstNSI	RCATGY	3 cut(s)	87, 377, 643
BstSCI	CCNGG	3 cut(s)	346, 632, 955
BstSLI	GKGCMC	1 cut(s)	336
BstV1I	GCAGC	2 cut(s)	159, 422
BstV2I	GAAGAC	1 cut(s)	608
BstX2I	RGATCY	2 cut(s)	483, 528
BstXI	CCANNNNNNTGG	1 cut(s)	224
BstYI	RGATCY	2 cut(s)	483, 528
Bsu15I	ATCGAT	1 cut(s)	878
Bsu36I	CCTNAGG	1 cut(s)	999
BsuI	GTATCC	2 cut(s)	139, 466
BsuRI	GGCC	3 cut(s)	136, 493, 624
BsuTUI	ATCGAT	1 cut(s)	878
BtgZI	GCGATG	1 cut(s)	468
BtsCI	GGATG	2 cut(s)	424, 686
BveI	ACCTGC	1 cut(s)	672
Cac8I	GCNNGC	3 cut(s)	81, 240, 435
CaiI	CAGNNNCTG	2 cut(s)	597, 896
Cfr13I	GGNCC	3 cut(s)	205, 231, 623
ClaI	ATCGAT	1 cut(s)	878
CsiI	ACCWGGT	1 cut(s)	632
Csp6I	GTAC	3 cut(s)	568, 637, 946
CviAII	CATG	7 cut(s)	84, 168, 202, 224, 374, 640, 809
CviQI	GTAC	3 cut(s)	568, 637, 946
DdeI	CTNAG	1 cut(s)	999
DpnI	GATC	7 cut(s)	13, 485, 530, 819, 863, 877, 1020
DpnII	GATC	7 cut(s)	11, 483, 528, 817, 861, 875, 1018
EaeI	YGGCCR	1 cut(s)	134
Eam1104I	CTCTTC	3 cut(s)	21, 834, 991
EarI	CTCTTC	3 cut(s)	21, 834, 991
EciI	GGCGGA	2 cut(s)	485, 778
Eco130I	CCWWGG	1 cut(s)	488
Eco32I	GATATC	1 cut(s)	301
Eco47I	GGWCC	2 cut(s)	205, 231
Eco57I	CTGAAG	2 cut(s)	259, 858
Eco81I	CCTNAGG	1 cut(s)	999
EcoRII	CCWGG	3 cut(s)	346, 632, 955
EcoRV	GATATC	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	488
EcoT22I	ATGCAT	1 cut(s)	645
ErhI	CCWWGG	1 cut(s)	488
FaeI	CATG	7 cut(s)	87, 171, 205, 227, 377, 643, 812
FatI	CATG	7 cut(s)	83, 167, 201, 223, 373, 639, 808
FauI	CCCGC	1 cut(s)	670
FbaI	TGATCA	1 cut(s)	861
Fnu4HI	GCNGC	3 cut(s)	173, 411, 494
FokI	GGATG	2 cut(s)	431, 693
Fsp4HI	GCNGC	3 cut(s)	173, 411, 494
FspBI	CTAG	2 cut(s)	489, 1023
GluI	GCNGC	3 cut(s)	173, 411, 494
GsuI	CTGGAG	2 cut(s)	138, 978
HaeIII	GGCC	3 cut(s)	136, 493, 624
HapII	CCGG	2 cut(s)	112, 133
Hin1II	CATG	7 cut(s)	87, 171, 205, 227, 377, 643, 812
HinfI	GANTC	4 cut(s)	37, 96, 368, 880
HpaII	CCGG	2 cut(s)	112, 133
HphI	GGTGA	1 cut(s)	824
Hpy166II	GTNNAC	3 cut(s)	165, 334, 846
Hpy188I	TCNGA	4 cut(s)	305, 673, 971, 1018
Hpy188III	TCNNGA	5 cut(s)	460, 598, 727, 776, 865
Hpy8I	GTNNAC	3 cut(s)	165, 334, 846
HpyAV	CCTTC	5 cut(s)	230, 394, 543, 917, 959
HpyCH4III	ACNGT	2 cut(s)	66, 510
HpyCH4IV	ACGT	2 cut(s)	406, 500
HpyF10VI	GCNNNNNNNGC	2 cut(s)	649, 760
HpyF3I	CTNAG	1 cut(s)	999
HpySE526I	ACGT	2 cut(s)	406, 500
Hsp92II	CATG	7 cut(s)	87, 171, 205, 227, 377, 643, 812
KpnI	GGTACC	1 cut(s)	949
Ksp22I	TGATCA	1 cut(s)	861
Kzo9I	GATC	7 cut(s)	11, 483, 528, 817, 861, 875, 1018
LguI	GCTCTTC	1 cut(s)	991
LmnI	GCTCC	2 cut(s)	163, 734
Lsp1109I	GCAGC	2 cut(s)	159, 422
LweI	GCATC	4 cut(s)	253, 603, 617, 664
MabI	ACCWGGT	1 cut(s)	632
MaeI	CTAG	2 cut(s)	489, 1023
MaeII	ACGT	2 cut(s)	406, 500
MaeIII	GTNAC	3 cut(s)	118, 812, 831
MalI	GATC	7 cut(s)	13, 485, 530, 819, 863, 877, 1020
MboI	GATC	7 cut(s)	11, 483, 528, 817, 861, 875, 1018
MboII	GAAGA	7 cut(s)	8, 265, 613, 798, 851, 880, 978
MflI	RGATCY	2 cut(s)	483, 528
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	4 cut(s)	327, 389, 900, 991
MlyI	GAGTC	2 cut(s)	31, 90
MnlI	CCTC	7 cut(s)	140, 162, 642, 706, 753, 789, 953
Mph1103I	ATGCAT	1 cut(s)	645
MslI	CAYNNNNRTG	2 cut(s)	183, 222
MspI	CCGG	2 cut(s)	112, 133
MspR9I	CCNGG	3 cut(s)	348, 634, 957
Mva1269I	GAATGC	3 cut(s)	405, 643, 934
MvaI	CCWGG	3 cut(s)	348, 634, 957
MwoI	GCNNNNNNNGC	2 cut(s)	649, 760
NdeII	GATC	7 cut(s)	11, 483, 528, 817, 861, 875, 1018
NlaIII	CATG	7 cut(s)	87, 171, 205, 227, 377, 643, 812
NlaIV	GGNNCC	3 cut(s)	6, 530, 947
NmuCI	GTSAC	1 cut(s)	812
NsiI	ATGCAT	1 cut(s)	645
NspI	RCATGY	3 cut(s)	87, 377, 643
PciSI	GCTCTTC	1 cut(s)	991
PcsI	WCGNNNNNNNCGW	2 cut(s)	16, 822
PctI	GAATGC	3 cut(s)	405, 643, 934
PfeI	GAWTC	2 cut(s)	368, 880
PkrI	GCNGC	3 cut(s)	174, 412, 495
PleI	GAGTC	2 cut(s)	31, 90
PpsI	GAGTC	2 cut(s)	31, 90
Psp6I	CCWGG	3 cut(s)	346, 632, 955
PspGI	CCWGG	3 cut(s)	346, 632, 955
PspN4I	GGNNCC	3 cut(s)	6, 530, 947
PspPI	GGNCC	3 cut(s)	205, 231, 623
PstNI	CAGNNNCTG	2 cut(s)	597, 896
PsuI	RGATCY	2 cut(s)	483, 528
RsaI	GTAC	3 cut(s)	569, 638, 947
RsaNI	GTAC	3 cut(s)	568, 637, 946
RseI	CAYNNNNRTG	2 cut(s)	183, 222
SapI	GCTCTTC	1 cut(s)	991
SatI	GCNGC	3 cut(s)	173, 411, 494
Sau3AI	GATC	7 cut(s)	11, 483, 528, 817, 861, 875, 1018
Sau96I	GGNCC	3 cut(s)	205, 231, 623
SchI	GAGTC	2 cut(s)	31, 90
ScrFI	CCNGG	3 cut(s)	348, 634, 957
SduI	GDGCHC	1 cut(s)	336
SexAI	ACCWGGT	1 cut(s)	632
SfaNI	GCATC	4 cut(s)	253, 603, 617, 664
SinI	GGWCC	2 cut(s)	205, 231
SmiMI	CAYNNNNRTG	2 cut(s)	183, 222
Sse9I	AATT	4 cut(s)	327, 389, 900, 991
SsiI	CCGC	6 cut(s)	363, 470, 494, 677, 763, 932
SspMI	CTAG	2 cut(s)	489, 1023
StyD4I	CCNGG	3 cut(s)	346, 632, 955
StyI	CCWWGG	1 cut(s)	488
TaaI	ACNGT	2 cut(s)	66, 510
TaiI	ACGT	2 cut(s)	409, 503
TaqI	TCGA	4 cut(s)	358, 647, 825, 878
TasI	AATT	4 cut(s)	327, 389, 900, 991
TatI	WGTACW	1 cut(s)	567
TauI	GCSGC	1 cut(s)	496
TfiI	GAWTC	2 cut(s)	368, 880
TseFI	GTSAC	1 cut(s)	812
TseI	GCWGC	2 cut(s)	172, 410
Tsp45I	GTSAC	1 cut(s)	812
TspDTI	ATGAA	4 cut(s)	212, 297, 336, 569
TspGWI	ACGGA	3 cut(s)	49, 150, 223
VneI	GTGCAC	1 cut(s)	332
VpaK11BI	GGWCC	2 cut(s)	205, 231
XapI	RAATTY	1 cut(s)	389
XceI	RCATGY	3 cut(s)	87, 377, 643
XmaJI	CCTAGG	1 cut(s)	488
XspI	CTAG	2 cut(s)	489, 1023
Zsp2I	ATGCAT	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.