Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009948

Physical Location & Seq

Genomic Coordinates Forward (+)

3833943 .. 3836035

Gene Structure 2093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g05630.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAGGAAGCTGAGCAGAAAATTGAGAAATTCACAGGACGACGACCTCTCTCTCCCCACTTGGGACGATCCTGCCCGCAACGATTCTCGCCCCATGGATACTCAAGAGCAAGAGGAGTTGGTTCGTGAAATGGAGAAGAGTCAAGCTCAACAGAGTCGGTTATGGAGGGTTTTGTTTGCATCGCTTCTCTTTTGTTTCTCAGCGTTTCTTTTGTACTCAATCTGTCAGCAGGTTTTGTCTCCATGGGAATTGCGTTATCATGCTTACTTCATGGAGGAGGTGCCGTCATGGATGGTTATATCTGCAGATTGGCTAGCTGTTCTAGCATGTTCATCAGCTATCATAGGATTACTTCATGATTCAAAGCATCACCGCCGATGGATTTGGTACTCACTCTTTACTGGCATTGTACTCGCAGTTTTCTGGTTGTATTACATGTTGAGTTTGCCAAGGTTCCGCTGGGATATAATGTGGCTTCCATTTGGACCTCTAAGCGGGGCAGGACTGGCTCTGTACATTGATCATCTGCTAACTGAATCATCAGAAGAGATGAGAAAACTTCGAGGCTATATGTATGCTTACAAAGCTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

23.39

Weight (kDa)

6.52

Isoelectric Point (pI)

63.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26240
fragaria_vesca	FvH4_1g06740
malus_domestica	MD02G1072300.v1.1 MD15G1202100.v1.1
prunus_persica	Prupe.7G215100_v2.0.a1
pyrus_communis	pycom02g05630 pycom15g17950
rosa_chinensis	RchiOBHm_Chr2g0092481 RchiOBHm_Chr7g0226351
rosa_laevigata	RLG00000016317
rosa_multiflora	Rmu_sc0002503.1_g000015 Rmu_sc0002503.1_g000016 Rmu_sc0023787.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149060
rosa_rugosa	Rorug02G0026900 Rorug02G0027100
rosa_samantha	Rh2AG072800 Rh2BG073400 Rh2DG071400 Rh2DG071500
rosa_wichuraiana	Rw2G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	220
AccB1I	GGYRCC	1 cut(s)	280
AciI	CCGC	4 cut(s)	76, 373, 457, 495
AclWI	GGATC	1 cut(s)	62
AcsI	RAATTY	1 cut(s)	28
AfaI	GTAC	4 cut(s)	215, 389, 411, 515
AfiI	CCNNNNNNNGG	2 cut(s)	61, 494
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	1 cut(s)	363
AluBI	AGCT	5 cut(s)	10, 146, 317, 338, 587
AluI	AGCT	5 cut(s)	10, 146, 317, 338, 587
Alw26I	GTCTC	1 cut(s)	243
AlwI	GGATC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	485
AsuHPI	GGTGA	1 cut(s)	362
AsuNHI	GCTAGC	1 cut(s)	313
AvaII	GGWCC	1 cut(s)	485
BanI	GGYRCC	1 cut(s)	280
BccI	CCATC	2 cut(s)	286, 372
BceAI	ACGGC	1 cut(s)	268
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BciVI	GTATCC	1 cut(s)	91
BclI	TGATCA	1 cut(s)	520
BcoDI	GTCTC	1 cut(s)	243
BfaI	CTAG	3 cut(s)	314, 323, 588
BfmI	CTRYAG	1 cut(s)	303
BfuAI	ACCTGC	1 cut(s)	220
BfuI	GTATCC	1 cut(s)	91
BlpI	GCTNAGC	1 cut(s)	11
Bme18I	GGWCC	1 cut(s)	485
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	2 cut(s)	282, 455
BmsI	GCATC	2 cut(s)	188, 376
BmtI	GCTAGC	1 cut(s)	317
BplI	GAGNNNNNCTC	2 cut(s)	130, 162
Bpu1102I	GCTNAGC	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	87
BsaJI	CCNNGG	3 cut(s)	93, 242, 449
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 494
Bse1I	ACTGG	2 cut(s)	406, 510
BseDI	CCNNGG	3 cut(s)	93, 242, 449
BseGI	GGATG	1 cut(s)	297
BseLI	CCNNNNNNNGG	2 cut(s)	61, 494
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	2 cut(s)	406, 510
BseRI	GAGGAG	2 cut(s)	128, 290
BseYI	CCCAGC	1 cut(s)	459
BshNI	GGYRCC	1 cut(s)	280
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	2 cut(s)	61, 494
BsmAI	GTCTC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	77
Bsp1407I	TGTACA	1 cut(s)	513
Bsp143I	GATC	2 cut(s)	67, 520
Bsp1720I	GCTNAGC	1 cut(s)	11
Bsp19I	CCATGG	2 cut(s)	93, 242
BspACI	CCGC	4 cut(s)	76, 373, 457, 495
BspCNI	CTCAG	1 cut(s)	212
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	282, 455
BspMAI	CTGCAG	1 cut(s)	307
BspMI	ACCTGC	1 cut(s)	220
BspOI	GCTAGC	1 cut(s)	317
BspPI	GGATC	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	280
BsrGI	TGTACA	1 cut(s)	513
BsrI	ACTGG	2 cut(s)	406, 510
BssECI	CCNNGG	3 cut(s)	93, 242, 449
BssMI	GATC	2 cut(s)	67, 520
BssT1I	CCWWGG	3 cut(s)	93, 242, 449
Bst6I	CTCTTC	2 cut(s)	131, 540
BstAUI	TGTACA	1 cut(s)	513
BstC8I	GCNNGC	2 cut(s)	76, 315
BstDEI	CTNAG	3 cut(s)	11, 199, 491
BstDSI	CCRYGG	2 cut(s)	93, 242
BstF5I	GGATG	1 cut(s)	297
BstKTI	GATC	2 cut(s)	70, 523
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	2 cut(s)	67, 520
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 506, 584
BstNSI	RCATGY	2 cut(s)	330, 439
BstSFI	CTRYAG	1 cut(s)	303
BsuI	GTATCC	1 cut(s)	91
BtgI	CCRYGG	2 cut(s)	93, 242
BtgZI	GCGATG	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	297
BveI	ACCTGC	1 cut(s)	220
Cac8I	GCNNGC	2 cut(s)	76, 315
CciI	TCATGA	1 cut(s)	355
Cfr13I	GGNCC	1 cut(s)	485
Csp6I	GTAC	4 cut(s)	214, 388, 410, 514
CviAII	CATG	8 cut(s)	94, 243, 260, 271, 288, 327, 356, 436
CviJI	RGCY	9 cut(s)	10, 146, 313, 317, 338, 475, 509, 567, 587
CviKI_1	RGCY	9 cut(s)	10, 146, 313, 317, 338, 475, 509, 567, 587
CviQI	GTAC	4 cut(s)	214, 388, 410, 514
DdeI	CTNAG	3 cut(s)	11, 199, 491
DpnI	GATC	2 cut(s)	69, 522
DpnII	GATC	2 cut(s)	67, 520
Eam1104I	CTCTTC	2 cut(s)	131, 540
EarI	CTCTTC	2 cut(s)	131, 540
Eco130I	CCWWGG	3 cut(s)	93, 242, 449
Eco47I	GGWCC	1 cut(s)	485
EcoT14I	CCWWGG	3 cut(s)	93, 242, 449
ErhI	CCWWGG	3 cut(s)	93, 242, 449
FaeI	CATG	8 cut(s)	97, 246, 263, 274, 291, 330, 359, 439
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	8 cut(s)	93, 242, 259, 270, 287, 326, 355, 435
FauI	CCCGC	2 cut(s)	83, 488
FbaI	TGATCA	1 cut(s)	520
FokI	GGATG	1 cut(s)	304
FspBI	CTAG	3 cut(s)	314, 323, 588
GsaI	CCCAGC	1 cut(s)	463
Hin1II	CATG	8 cut(s)	97, 246, 263, 274, 291, 330, 359, 439
HinfI	GANTC	5 cut(s)	83, 139, 154, 359, 536
HphI	GGTGA	1 cut(s)	362
Hpy188I	TCNGA	1 cut(s)	544
Hpy188III	TCNNGA	3 cut(s)	104, 125, 356
Hpy99I	CGWCG	1 cut(s)	44
HpyCH4V	TGCA	2 cut(s)	179, 305
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 506, 584
HpyF3I	CTNAG	3 cut(s)	11, 199, 491
Hsp92II	CATG	8 cut(s)	97, 246, 263, 274, 291, 330, 359, 439
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	2 cut(s)	67, 520
LpnPI	CCDG	8 cut(s)	20, 84, 215, 387, 409, 445, 486, 491
LweI	GCATC	2 cut(s)	188, 376
MaeI	CTAG	3 cut(s)	314, 323, 588
MalI	GATC	2 cut(s)	69, 522
MboI	GATC	2 cut(s)	67, 520
MboII	GAAGA	2 cut(s)	148, 557
MluCI	AATT	3 cut(s)	20, 28, 248
MlyI	GAGTC	2 cut(s)	148, 163
MnlI	CCTC	7 cut(s)	56, 106, 159, 268, 271, 498, 557
MspA1I	CMGCKG	1 cut(s)	459
MwoI	GCNNNNNNNGC	3 cut(s)	323, 506, 584
NcoI	CCATGG	2 cut(s)	93, 242
NdeII	GATC	2 cut(s)	67, 520
NheI	GCTAGC	1 cut(s)	313
NlaIII	CATG	8 cut(s)	97, 246, 263, 274, 291, 330, 359, 439
NlaIV	GGNNCC	2 cut(s)	282, 455
NspI	RCATGY	2 cut(s)	330, 439
PagI	TCATGA	1 cut(s)	355
PciI	ACATGT	1 cut(s)	435
PfeI	GAWTC	3 cut(s)	83, 359, 536
PleI	GAGTC	2 cut(s)	147, 162
PpsI	GAGTC	2 cut(s)	147, 162
PscI	ACATGT	1 cut(s)	435
PspFI	CCCAGC	1 cut(s)	459
PspN4I	GGNNCC	2 cut(s)	282, 455
PspPI	GGNCC	1 cut(s)	485
PstI	CTGCAG	1 cut(s)	307
RsaI	GTAC	4 cut(s)	215, 389, 411, 515
RsaNI	GTAC	4 cut(s)	214, 388, 410, 514
Sau3AI	GATC	2 cut(s)	67, 520
Sau96I	GGNCC	1 cut(s)	485
SchI	GAGTC	2 cut(s)	148, 163
SfaNI	GCATC	2 cut(s)	188, 376
SfcI	CTRYAG	1 cut(s)	303
SinI	GGWCC	1 cut(s)	485
SmlI	CTYRAG	1 cut(s)	102
SmoI	CTYRAG	1 cut(s)	102
Sse9I	AATT	3 cut(s)	20, 28, 248
SsiI	CCGC	4 cut(s)	76, 373, 457, 495
SspMI	CTAG	3 cut(s)	314, 323, 588
StyI	CCWWGG	3 cut(s)	93, 242, 449
TaqI	TCGA	1 cut(s)	562
TasI	AATT	3 cut(s)	20, 28, 248
TatI	WGTACW	3 cut(s)	213, 409, 513
TfiI	GAWTC	3 cut(s)	83, 359, 536
TspDTI	ATGAA	3 cut(s)	259, 321, 344
VpaK11BI	GGWCC	1 cut(s)	485
XapI	RAATTY	1 cut(s)	28
XceI	RCATGY	2 cut(s)	330, 439
XcmI	CCANNNNNNNNNTGG	1 cut(s)	456
XspI	CTAG	3 cut(s)	314, 323, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.