Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009948

Physical Location & Seq

Genomic Coordinates Reverse (-)

86676435 .. 86678416

Gene Structure 1982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00149060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAAGAAGCTGGCGAGAACATTCAGAAGGTCTGAGGACGATGACCTCTCTCTTCCTACCCGGGACGACCCGGCTCCCATGGACTCCCAAGAACAAGAGGAATTGGTTCGATCCTTCGAAAGGAACCAAGCTCAACAAAGTCGTTTCTGGAGGGTGTTTTTTGCATCACTTCTCTTCTGCTTCGCTGCGTTTCTTATGTACTCAATCTTTCAGCAGGTTTCGTATCCATGGGAACTGCGTTATCATGCTTACTTCATGGAGGAGGTGCACTCATGGATAATTATATCAGCAGATTGGCTAGCTGTGGTAGCATGTTCATCAGCAATAATAGGATTAGTTCATGATTCAAAGCATCACCGGCAATGGATTTGGTACTCATTCCTTACTGGCATCATCCTCGCAGTTTTCTGGCTGTATTACATGTTGAGATTGCCAAGATTCCACTGGGATGTACTCTGGCTGCCGTTTGGACCTATAAGTGGAGCTGGACTCTGTCTATATGTGGATCATCTGCTAATGGAGTCATCAGAAGAGATAAGAAAACTTCGAGGCTATATGTATTCTTACAAAGCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

23.04

Weight (kDa)

6.65

Isoelectric Point (pI)

62.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26240
fragaria_vesca	FvH4_1g06740
malus_domestica	MD02G1072300.v1.1 MD15G1202100.v1.1
prunus_persica	Prupe.7G215100_v2.0.a1
pyrus_communis	pycom02g05630 pycom15g17950
rosa_chinensis	RchiOBHm_Chr2g0092481 RchiOBHm_Chr7g0226351
rosa_laevigata	RLG00000016317
rosa_multiflora	Rmu_sc0002503.1_g000015 Rmu_sc0002503.1_g000016 Rmu_sc0023787.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149060
rosa_rugosa	Rorug02G0026900 Rorug02G0027100
rosa_samantha	Rh2AG072800 Rh2BG073400 Rh2DG071400 Rh2DG071500
rosa_wichuraiana	Rw2G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	205
AclWI	GGATC	2 cut(s)	105, 513
AfaI	GTAC	3 cut(s)	200, 374, 453
AfiI	CCNNNNNNNGG	2 cut(s)	120, 479
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	1 cut(s)	348
AluBI	AGCT	4 cut(s)	10, 131, 302, 485
AluI	AGCT	4 cut(s)	10, 131, 302, 485
Alw21I	GWGCWC	1 cut(s)	270
Alw44I	GTGCAC	1 cut(s)	266
AlwI	GGATC	2 cut(s)	105, 513
Ama87I	CYCGRG	1 cut(s)	60
ApaLI	GTGCAC	1 cut(s)	266
ApeKI	GCWGC	2 cut(s)	185, 460
Asp700I	GAANNNNTTC	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	470
AsuC2I	CCSGG	3 cut(s)	61, 62, 71
AsuHPI	GGTGA	1 cut(s)	347
AsuII	TTCGAA	1 cut(s)	117
AsuNHI	GCTAGC	1 cut(s)	298
AvaI	CYCGRG	1 cut(s)	60
AvaII	GGWCC	1 cut(s)	470
BaeGI	GKGCMC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	172, 447
BceAI	ACGGC	1 cut(s)	448
BcgI	CGANNNNNNTGC	2 cut(s)	379, 413
BciVI	GTATCC	1 cut(s)	234
BcnI	CCSGG	3 cut(s)	61, 62, 71
BfaI	CTAG	1 cut(s)	299
BfuAI	ACCTGC	1 cut(s)	205
BfuI	GTATCC	1 cut(s)	234
BisI	GCNGC	2 cut(s)	186, 461
BlsI	GCNGC	2 cut(s)	187, 462
Bme1390I	CCNGG	3 cut(s)	61, 62, 71
Bme18I	GGWCC	1 cut(s)	470
BmeT110I	CYCGRG	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	470
BmiI	GGNNCC	2 cut(s)	75, 125
BmrFI	CCNGG	3 cut(s)	61, 62, 71
BmrI	ACTGGG	1 cut(s)	454
BmsI	GCATC	3 cut(s)	173, 361, 399
BmtI	GCTAGC	1 cut(s)	302
BmuI	ACTGGG	1 cut(s)	454
BplI	GAGNNNNNCTC	4 cut(s)	254, 286, 474, 506
BpmI	CTGGAG	1 cut(s)	169
Bpu14I	TTCGAA	1 cut(s)	117
BpuMI	CCSGG	3 cut(s)	61, 62, 71
BsaJI	CCNNGG	3 cut(s)	60, 78, 227
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 479
Bse118I	RCCGGY	1 cut(s)	357
Bse1I	ACTGG	2 cut(s)	391, 449
Bse3DI	GCAATG	1 cut(s)	368
BseDI	CCNNGG	3 cut(s)	60, 78, 227
BseGI	GGATG	2 cut(s)	393, 454
BseLI	CCNNNNNNNGG	2 cut(s)	120, 479
BseMI	GCAATG	1 cut(s)	368
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	2 cut(s)	391, 449
BseRI	GAGGAG	1 cut(s)	275
BseSI	GKGCMC	1 cut(s)	270
BseXI	GCAGC	2 cut(s)	172, 447
BsiHKAI	GWGCWC	1 cut(s)	270
BsiHKCI	CYCGRG	1 cut(s)	60
BsiSI	CCGG	3 cut(s)	61, 71, 358
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	2 cut(s)	120, 479
BsmFI	GGGAC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	60
Bsp119I	TTCGAA	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	2 cut(s)	110, 505
Bsp19I	CCATGG	2 cut(s)	78, 227
BspCNI	CTCAG	1 cut(s)	25
BspHI	TCATGA	1 cut(s)	340
BspLI	GGNNCC	2 cut(s)	75, 125
BspMI	ACCTGC	1 cut(s)	205
BspOI	GCTAGC	1 cut(s)	302
BspPI	GGATC	2 cut(s)	105, 513
BspT104I	TTCGAA	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	368
BsrFI	RCCGGY	1 cut(s)	357
BsrI	ACTGG	2 cut(s)	391, 449
BssAI	RCCGGY	1 cut(s)	357
BssECI	CCNNGG	3 cut(s)	60, 78, 227
BssMI	GATC	2 cut(s)	110, 505
BssT1I	CCWWGG	2 cut(s)	78, 227
Bst6I	CTCTTC	3 cut(s)	57, 179, 525
BstBI	TTCGAA	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	12, 300
BstDEI	CTNAG	1 cut(s)	33
BstDSI	CCRYGG	2 cut(s)	78, 227
BstENI	CCTNNNNNAGG	1 cut(s)	118
BstF5I	GGATG	2 cut(s)	393, 454
BstKTI	GATC	2 cut(s)	113, 508
BstMBI	GATC	2 cut(s)	110, 505
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 358
BstNSI	RCATGY	2 cut(s)	315, 424
BstSCI	CCNGG	3 cut(s)	59, 60, 69
BstSLI	GKGCMC	1 cut(s)	270
BstV1I	GCAGC	2 cut(s)	172, 447
BsuI	GTATCC	1 cut(s)	234
BtgI	CCRYGG	2 cut(s)	78, 227
BtsCI	GGATG	2 cut(s)	393, 454
BtsIMutI	CAGTG	1 cut(s)	442
BveI	ACCTGC	1 cut(s)	205
Cac8I	GCNNGC	2 cut(s)	12, 300
CciI	TCATGA	1 cut(s)	340
Cfr10I	RCCGGY	1 cut(s)	357
Cfr13I	GGNCC	1 cut(s)	470
Cfr9I	CCCGGG	1 cut(s)	60
Csp6I	GTAC	3 cut(s)	199, 373, 452
CviAII	CATG	8 cut(s)	79, 228, 245, 256, 273, 312, 341, 421
CviQI	GTAC	3 cut(s)	199, 373, 452
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	2 cut(s)	112, 507
DpnII	GATC	2 cut(s)	110, 505
Eam1104I	CTCTTC	3 cut(s)	57, 179, 525
EarI	CTCTTC	3 cut(s)	57, 179, 525
Eco130I	CCWWGG	2 cut(s)	78, 227
Eco47I	GGWCC	1 cut(s)	470
Eco88I	CYCGRG	1 cut(s)	60
EcoNI	CCTNNNNNAGG	1 cut(s)	118
EcoT14I	CCWWGG	2 cut(s)	78, 227
ErhI	CCWWGG	2 cut(s)	78, 227
FaeI	CATG	8 cut(s)	82, 231, 248, 259, 276, 315, 344, 424
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	8 cut(s)	78, 227, 244, 255, 272, 311, 340, 420
Fnu4HI	GCNGC	2 cut(s)	186, 461
FokI	GGATG	2 cut(s)	380, 461
Fsp4HI	GCNGC	2 cut(s)	186, 461
FspBI	CTAG	1 cut(s)	299
GluI	GCNGC	2 cut(s)	186, 461
GsuI	CTGGAG	1 cut(s)	169
HapII	CCGG	3 cut(s)	61, 71, 358
Hin1II	CATG	8 cut(s)	82, 231, 248, 259, 276, 315, 344, 424
HinfI	GANTC	5 cut(s)	83, 344, 438, 489, 521
HpaII	CCGG	3 cut(s)	61, 71, 358
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	3 cut(s)	26, 34, 529
Hpy188III	TCNNGA	2 cut(s)	148, 341
Hpy8I	GTNNAC	1 cut(s)	268
HpyAV	CCTTC	2 cut(s)	21, 124
HpyCH4V	TGCA	2 cut(s)	164, 268
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 358
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	8 cut(s)	82, 231, 248, 259, 276, 315, 344, 424
Kzo9I	GATC	2 cut(s)	110, 505
LmnI	GCTCC	2 cut(s)	79, 482
Lsp1109I	GCAGC	2 cut(s)	172, 447
LweI	GCATC	3 cut(s)	173, 361, 399
MaeI	CTAG	1 cut(s)	299
MalI	GATC	2 cut(s)	112, 507
MboI	GATC	2 cut(s)	110, 505
MboII	GAAGA	4 cut(s)	16, 44, 166, 542
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	2 cut(s)	101, 279
MlyI	GAGTC	3 cut(s)	77, 483, 530
MnlI	CCTC	8 cut(s)	28, 56, 91, 144, 253, 256, 407, 542
MroXI	GAANNNNTTC	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	447
MspI	CCGG	3 cut(s)	61, 71, 358
MspR9I	CCNGG	3 cut(s)	61, 62, 71
MwoI	GCNNNNNNNGC	2 cut(s)	308, 358
NciI	CCSGG	3 cut(s)	61, 62, 71
NcoI	CCATGG	2 cut(s)	78, 227
NdeII	GATC	2 cut(s)	110, 505
NheI	GCTAGC	1 cut(s)	298
NlaIII	CATG	8 cut(s)	82, 231, 248, 259, 276, 315, 344, 424
NlaIV	GGNNCC	2 cut(s)	75, 125
NspI	RCATGY	2 cut(s)	315, 424
NspV	TTCGAA	1 cut(s)	117
PagI	TCATGA	1 cut(s)	340
PciI	ACATGT	1 cut(s)	420
PdmI	GAANNNNTTC	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	344, 438
PflFI	GACNNNGTC	1 cut(s)	492
PkrI	GCNGC	2 cut(s)	187, 462
PleI	GAGTC	3 cut(s)	77, 483, 529
PpsI	GAGTC	3 cut(s)	77, 483, 529
PscI	ACATGT	1 cut(s)	420
PspN4I	GGNNCC	2 cut(s)	75, 125
PspPI	GGNCC	1 cut(s)	470
PsyI	GACNNNGTC	1 cut(s)	492
RsaI	GTAC	3 cut(s)	200, 374, 453
RsaNI	GTAC	3 cut(s)	199, 373, 452
RseI	CAYNNNNRTG	1 cut(s)	447
SatI	GCNGC	2 cut(s)	186, 461
Sau3AI	GATC	2 cut(s)	110, 505
Sau96I	GGNCC	1 cut(s)	470
SchI	GAGTC	3 cut(s)	77, 483, 530
ScrFI	CCNGG	3 cut(s)	61, 62, 71
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	9 cut(s)	12, 32, 48, 133, 219, 267, 304, 475, 487
SfaNI	GCATC	3 cut(s)	173, 361, 399
SfuI	TTCGAA	1 cut(s)	117
SinI	GGWCC	1 cut(s)	470
SmaI	CCCGGG	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	447
Sse9I	AATT	2 cut(s)	101, 279
SspMI	CTAG	1 cut(s)	299
StyD4I	CCNGG	3 cut(s)	59, 60, 69
StyI	CCWWGG	2 cut(s)	78, 227
TaqI	TCGA	3 cut(s)	109, 117, 547
TasI	AATT	2 cut(s)	101, 279
TatI	WGTACW	2 cut(s)	198, 451
TfiI	GAWTC	2 cut(s)	344, 438
TscAI	CASTG	1 cut(s)	449
TseI	GCWGC	2 cut(s)	185, 460
TspDTI	ATGAA	4 cut(s)	17, 244, 306, 329
TspMI	CCCGGG	1 cut(s)	60
TspRI	CASTG	1 cut(s)	449
Tth111I	GACNNNGTC	1 cut(s)	492
VneI	GTGCAC	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	470
XagI	CCTNNNNNAGG	1 cut(s)	118
XceI	RCATGY	2 cut(s)	315, 424
XcmI	CCANNNNNNNNNTGG	1 cut(s)	441
XmaI	CCCGGG	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.