FvH4_1g06740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0009948
Physical Location & Seq
Forward (+)
3549927 .. 3551815
1889 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g06740.t1

Sequence Viewer

Length: 579 bp
ATGAAGAAGCTGGCTAGAAAACTCAGAAAGTCTCAGAACGATGACCTCTCTCTTCCTACTCGGGACGACCCGGCTCCAATGGACACCCAAGAACAAGAGGAATTGGTTCGATCCTTTGAGAAGAGCCAAGCTCAACAGAGTCGTATGTGGAGGGCTTTATTTGCATCACTTCTCTTCTGCTTCGCTGCGTTTCTTATGCACTCAATCCATCAGCAAGTTTCGTCTCCTTGGGAACTGCGTTTTCATGCTTACTTCATGGAGGAGATGGACTCATGGATGATAATATCTGCAGATTGGCTAGCTGTGGTAGCATGTTCATTAGCAATCAAAGGATTACTTCATAATTCAAAGCATCACAGGCGATGGATTTGGTTCTCGTTCCTTACTGGCATCATAGTCGCAGTTTTCTGGTTGTATTACATGTTAAGATTGCCAAGGTTCCGCTGGGATGTAATCTGGCTTCCGTTTGGACCTATAAGTGGCACTGGACTCTCTCTATATGTGGATCATCTGCTACTGGAGTCATCAGAAGAGATAAGAAAACTTCGTGGCTATATGTATGCTTACAAAGCCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

22.77

Weight (kDa)

9.12

Isoelectric Point (pI)

63.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 442
AclWI GGATC 2 cut(s) 105, 513
AfiI CCNNNNNNNGG 1 cut(s) 479
AflIII ACRYGT 1 cut(s) 420
AgsI TTSAA 1 cut(s) 348
AluBI AGCT 4 cut(s) 10, 131, 302, 576
AluI AGCT 4 cut(s) 10, 131, 302, 576
Alw26I GTCTC 2 cut(s) 36, 228
AlwI GGATC 2 cut(s) 105, 513
Ama87I CYCGRG 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 185
Asp700I GAANNNNTTC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 470
AsuC2I CCSGG 1 cut(s) 71
AsuNHI GCTAGC 1 cut(s) 298
AvaI CYCGRG 1 cut(s) 60
AvaII GGWCC 1 cut(s) 470
BarI GAAGNNNNNNTAC 2 cut(s) 444, 476
BbvI GCAGC 1 cut(s) 172
BccI CCATC 3 cut(s) 216, 259, 357
BcgI CGANNNNNNTGC 2 cut(s) 379, 413
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 2 cut(s) 36, 228
BfaI CTAG 2 cut(s) 15, 299
BfmI CTRYAG 1 cut(s) 288
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 1 cut(s) 71
Bme18I GGWCC 1 cut(s) 470
BmeT110I CYCGRG 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 470
BmiI GGNNCC 2 cut(s) 75, 440
BmrFI CCNGG 1 cut(s) 71
BmsI GCATC 3 cut(s) 173, 361, 399
BmtI GCTAGC 1 cut(s) 302
BplI GAGNNNNNCTC 4 cut(s) 115, 147, 254, 286
BpmI CTGGAG 1 cut(s) 539
BpuMI CCSGG 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 227, 434
Bsc4I CCNNNNNNNGG 1 cut(s) 479
Bse1I ACTGG 3 cut(s) 391, 490, 522
BseDI CCNNGG 2 cut(s) 227, 434
BseGI GGATG 2 cut(s) 282, 454
BseLI CCNNNNNNNGG 1 cut(s) 479
BseMII CTCAG 2 cut(s) 37, 47
BseNI ACTGG 3 cut(s) 391, 490, 522
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 1 cut(s) 172
BseYI CCCAGC 1 cut(s) 444
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 479
BsmAI GTCTC 2 cut(s) 36, 228
BsmBI CGTCTC 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 77
BsoBI CYCGRG 1 cut(s) 60
Bsp143I GATC 2 cut(s) 110, 505
BspACI CCGC 1 cut(s) 442
BspCNI CTCAG 2 cut(s) 36, 46
BspLI GGNNCC 2 cut(s) 75, 440
BspMAI CTGCAG 1 cut(s) 292
BspOI GCTAGC 1 cut(s) 302
BspPI GGATC 2 cut(s) 105, 513
BspQI GCTCTTC 1 cut(s) 116
BsrI ACTGG 3 cut(s) 391, 490, 522
BssECI CCNNGG 2 cut(s) 227, 434
BssMI GATC 2 cut(s) 110, 505
BssT1I CCWWGG 2 cut(s) 227, 434
Bst6I CTCTTC 4 cut(s) 57, 116, 179, 525
BstC8I GCNNGC 3 cut(s) 12, 300, 574
BstDEI CTNAG 2 cut(s) 23, 33
BstF5I GGATG 2 cut(s) 282, 454
BstKTI GATC 2 cut(s) 113, 508
BstMAI GTCTC 2 cut(s) 36, 228
BstMBI GATC 2 cut(s) 110, 505
BstMWI GCNNNNNNNGC 4 cut(s) 161, 308, 358, 569
BstNSI RCATGY 2 cut(s) 315, 424
BstSCI CCNGG 1 cut(s) 69
BstSFI CTRYAG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 172
BtgZI GCGATG 1 cut(s) 376
BtsCI GGATG 2 cut(s) 282, 454
BtsIMutI CAGTG 1 cut(s) 483
Cac8I GCNNGC 3 cut(s) 12, 300, 574
Cfr13I GGNCC 1 cut(s) 470
CviAII CATG 5 cut(s) 245, 256, 273, 312, 421
DdeI CTNAG 2 cut(s) 23, 33
DpnI GATC 2 cut(s) 112, 507
DpnII GATC 2 cut(s) 110, 505
Eam1104I CTCTTC 4 cut(s) 57, 116, 179, 525
EarI CTCTTC 4 cut(s) 57, 116, 179, 525
Eco130I CCWWGG 2 cut(s) 227, 434
Eco47I GGWCC 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 60
EcoT14I CCWWGG 2 cut(s) 227, 434
ErhI CCWWGG 2 cut(s) 227, 434
Esp3I CGTCTC 1 cut(s) 228
FaeI CATG 5 cut(s) 248, 259, 276, 315, 424
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FaqI GGGAC 1 cut(s) 77
FatI CATG 5 cut(s) 244, 255, 272, 311, 420
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 2 cut(s) 289, 461
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 2 cut(s) 15, 299
GluI GCNGC 1 cut(s) 186
GsaI CCCAGC 1 cut(s) 448
GsuI CTGGAG 1 cut(s) 539
HapII CCGG 1 cut(s) 71
Hin1II CATG 5 cut(s) 248, 259, 276, 315, 424
HinfI GANTC 4 cut(s) 139, 269, 489, 521
HpaII CCGG 1 cut(s) 71
Hpy188I TCNGA 3 cut(s) 26, 36, 529
Hpy188III TCNNGA 1 cut(s) 62
HpyCH4V TGCA 3 cut(s) 164, 199, 290
HpyF10VI GCNNNNNNNGC 4 cut(s) 161, 308, 358, 569
HpyF3I CTNAG 2 cut(s) 23, 33
Hsp92II CATG 5 cut(s) 248, 259, 276, 315, 424
Kzo9I GATC 2 cut(s) 110, 505
LguI GCTCTTC 1 cut(s) 116
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 8 cut(s) 84, 343, 372, 394, 430, 442, 471, 503
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 3 cut(s) 173, 361, 399
MaeI CTAG 2 cut(s) 15, 299
MalI GATC 2 cut(s) 112, 507
MboI GATC 2 cut(s) 110, 505
MboII GAAGA 5 cut(s) 16, 44, 133, 166, 542
MluCI AATT 2 cut(s) 101, 343
MlyI GAGTC 4 cut(s) 148, 263, 483, 530
MnlI CCTC 4 cut(s) 56, 91, 144, 253
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 1 cut(s) 425
MspA1I CMGCKG 2 cut(s) 444, 576
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 71
MwoI GCNNNNNNNGC 4 cut(s) 161, 308, 358, 569
NciI CCSGG 1 cut(s) 71
NdeII GATC 2 cut(s) 110, 505
NheI GCTAGC 1 cut(s) 298
NlaIII CATG 5 cut(s) 248, 259, 276, 315, 424
NlaIV GGNNCC 2 cut(s) 75, 440
NspI RCATGY 2 cut(s) 315, 424
PciI ACATGT 1 cut(s) 420
PciSI GCTCTTC 1 cut(s) 116
PdmI GAANNNNTTC 1 cut(s) 105
PkrI GCNGC 1 cut(s) 187
PleI GAGTC 4 cut(s) 147, 263, 483, 529
PpsI GAGTC 4 cut(s) 147, 263, 483, 529
PscI ACATGT 1 cut(s) 420
PspFI CCCAGC 1 cut(s) 444
PspN4I GGNNCC 2 cut(s) 75, 440
PspPI GGNCC 1 cut(s) 470
PstI CTGCAG 1 cut(s) 292
PvuII CAGCTG 1 cut(s) 576
SapI GCTCTTC 1 cut(s) 116
SaqAI TTAA 1 cut(s) 425
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 2 cut(s) 110, 505
Sau96I GGNCC 1 cut(s) 470
SchI GAGTC 4 cut(s) 148, 263, 483, 530
ScrFI CCNGG 1 cut(s) 71
SetI ASST 7 cut(s) 12, 48, 133, 304, 440, 475, 578
SfaNI GCATC 3 cut(s) 173, 361, 399
SfcI CTRYAG 1 cut(s) 288
SinI GGWCC 1 cut(s) 470
Sse9I AATT 2 cut(s) 101, 343
SsiI CCGC 1 cut(s) 442
SspMI CTAG 2 cut(s) 15, 299
StyD4I CCNGG 1 cut(s) 69
StyI CCWWGG 2 cut(s) 227, 434
TaqI TCGA 1 cut(s) 109
TasI AATT 2 cut(s) 101, 343
Tru1I TTAA 1 cut(s) 425
Tru9I TTAA 1 cut(s) 425
TscAI CASTG 1 cut(s) 490
TseI GCWGC 1 cut(s) 185
TspDTI ATGAA 5 cut(s) 17, 233, 244, 306, 329
TspGWI ACGGA 1 cut(s) 453
TspRI CASTG 1 cut(s) 490
VpaK11BI GGWCC 1 cut(s) 470
XceI RCATGY 2 cut(s) 315, 424
XcmI CCANNNNNNNNNTGG 1 cut(s) 441
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 2 cut(s) 15, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.