Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009948

Physical Location & Seq

Genomic Coordinates Forward (+)

6113647 .. 6115960

Gene Structure 2314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG072800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGATTTGGTACTCATTCCTTACTGGCATCGTACTCGCAGTTTTCTGGCTGTATTACATGTTCAGATTGCCAAGATTCCGCTGGGATGTAATCTGGCTGCCGTTTGGACCTATAAGTGTTGCCCAAAGAAGAGAAATCAAGGCCCTGATAGCACACTACACCGCCGCCAGCCAAACACTAAATATAGGGCCCCAGCCAAACGAAGAGTAGCACCTAAAGCACAGAAATCCCTAAACCTAGAAACCGAGATAAAGAAGCGATTCAGGAAGAGGGCAATATTGGATGAGAAAGATGGAAATGATGATGATGGGGTGATTGCGCAGGCGGAAAAGAAACGTGTTAAAAGGCGGAACTCGCTGGATAAAGGTGATCGTGAGAATGGTTCAGGGTCAGAAGAAGAAAGACTGCGTGATCAAAGAGAGAAAGAGCAATTGGAGCAAAATATAAGGAAGAGAGACGCAGCAGCCACGCGGAAAGTAGCAAAGAAAAACTTGAGACGAAAGGAGGAAGAGGAGGCTGTTCAAAAAACCAGTGCTGATATTGAAGGTTTAAGAAGAGCTTCGAGACAACAATATCTAAAGAAAAGAGTGCAAAAGAAACTGGATGAAATCAGGGATGATATAGAAGATGAAGACTACTTATTTAAGCTCACTGAAGCAGAATACCGGGAGTTAGGTATCAAGAAGCAAATATTGGGGCTTGTGAAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031047 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

237

Amino Acids

27.85

Weight (kDa)

9.93

Isoelectric Point (pI)

59.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26240
fragaria_vesca	FvH4_1g06740
malus_domestica	MD02G1072300.v1.1 MD15G1202100.v1.1
prunus_persica	Prupe.7G215100_v2.0.a1
pyrus_communis	pycom02g05630 pycom15g17950
rosa_chinensis	RchiOBHm_Chr2g0092481 RchiOBHm_Chr7g0226351
rosa_laevigata	RLG00000016317
rosa_multiflora	Rmu_sc0002503.1_g000015 Rmu_sc0002503.1_g000016 Rmu_sc0023787.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149060
rosa_rugosa	Rorug02G0026900 Rorug02G0027100
rosa_samantha	Rh2AG072800 Rh2BG073400 Rh2DG071400 Rh2DG071500
rosa_wichuraiana	Rw2G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	321
AccII	CGCG	1 cut(s)	472
AciI	CCGC	6 cut(s)	80, 163, 166, 326, 349, 472
AcuI	CTGAAG	1 cut(s)	675
AfaI	GTAC	2 cut(s)	12, 34
AflIII	ACRYGT	2 cut(s)	58, 337
AgsI	TTSAA	2 cut(s)	524, 545
AjuI	GAANNNNNNNTTGG	4 cut(s)	416, 448, 677, 709
AluBI	AGCT	2 cut(s)	560, 649
AluI	AGCT	2 cut(s)	560, 649
Alw26I	GTCTC	3 cut(s)	450, 490, 559
AoxI	GGCC	2 cut(s)	142, 189
ApaI	GGGCCC	1 cut(s)	193
ApeKI	GCWGC	3 cut(s)	98, 461, 464
Asp700I	GAANNNNTTC	2 cut(s)	260, 559
AspLEI	GCGC	1 cut(s)	322
AspS9I	GGNCC	4 cut(s)	108, 143, 189, 190
AsuC2I	CCSGG	1 cut(s)	668
AsuHPI	GGTGA	2 cut(s)	325, 380
AvaII	GGWCC	1 cut(s)	108
BaeGI	GKGCMC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	639
BbvI	GCAGC	3 cut(s)	85, 473, 476
BccI	CCATC	2 cut(s)	287, 302
BceAI	ACGGC	1 cut(s)	86
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BclI	TGATCA	1 cut(s)	412
BcnI	CCSGG	1 cut(s)	668
BcoDI	GTCTC	3 cut(s)	450, 490, 559
BfaI	CTAG	1 cut(s)	239
BisI	GCNGC	4 cut(s)	99, 166, 462, 465
BlsI	GCNGC	4 cut(s)	100, 167, 463, 466
Bme1390I	CCNGG	1 cut(s)	668
Bme18I	GGWCC	1 cut(s)	108
BmgT120I	GGNCC	4 cut(s)	108, 143, 189, 190
BmiI	GGNNCC	2 cut(s)	191, 192
BmrFI	CCNGG	1 cut(s)	668
BmsI	GCATC	1 cut(s)	37
BpiI	GAAGAC	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	514
BpuMI	CCSGG	1 cut(s)	668
Bse1I	ACTGG	3 cut(s)	29, 531, 606
BseGI	GGATG	4 cut(s)	92, 289, 610, 622
BseNI	ACTGG	3 cut(s)	29, 531, 606
BseRI	GAGGAG	1 cut(s)	527
BseSI	GKGCMC	1 cut(s)	193
BseXI	GCAGC	3 cut(s)	85, 473, 476
BseYI	CCCAGC	2 cut(s)	82, 193
Bsh1236I	CGCG	1 cut(s)	472
BshFI	GGCC	2 cut(s)	144, 191
BsiSI	CCGG	1 cut(s)	667
BsmAI	GTCTC	3 cut(s)	450, 490, 559
BsmBI	CGTCTC	2 cut(s)	450, 490
BsnI	GGCC	2 cut(s)	144, 191
Bsp120I	GGGCCC	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	370, 412
BspACI	CCGC	6 cut(s)	80, 163, 166, 326, 349, 472
BspANI	GGCC	2 cut(s)	144, 191
BspFNI	CGCG	1 cut(s)	472
BspLI	GGNNCC	2 cut(s)	191, 192
BspQI	GCTCTTC	1 cut(s)	550
BsrI	ACTGG	3 cut(s)	29, 531, 606
BssMI	GATC	2 cut(s)	370, 412
Bst6I	CTCTTC	6 cut(s)	125, 199, 263, 446, 504, 550
BstC8I	GCNNGC	2 cut(s)	170, 324
BstF5I	GGATG	4 cut(s)	92, 289, 610, 622
BstFNI	CGCG	1 cut(s)	472
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	2 cut(s)	373, 415
BstMAI	GTCTC	3 cut(s)	450, 490, 559
BstMBI	GATC	2 cut(s)	370, 412
BstMWI	GCNNNNNNNGC	4 cut(s)	150, 218, 355, 436
BstNSI	RCATGY	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	666
BstSLI	GKGCMC	1 cut(s)	193
BstUI	CGCG	1 cut(s)	472
BstV1I	GCAGC	3 cut(s)	85, 473, 476
BstV2I	GAAGAC	1 cut(s)	639
BsuRI	GGCC	2 cut(s)	144, 191
BtsCI	GGATG	4 cut(s)	92, 289, 610, 622
BtsIMutI	CAGTG	2 cut(s)	538, 651
Cac8I	GCNNGC	2 cut(s)	170, 324
CfoI	GCGC	1 cut(s)	322
Cfr13I	GGNCC	4 cut(s)	108, 143, 189, 190
CseI	GACGC	1 cut(s)	467
Csp6I	GTAC	2 cut(s)	11, 33
CviAII	CATG	1 cut(s)	59
CviQI	GTAC	2 cut(s)	11, 33
DpnI	GATC	2 cut(s)	372, 414
DpnII	GATC	2 cut(s)	370, 412
Eam1104I	CTCTTC	6 cut(s)	125, 199, 263, 446, 504, 550
EarI	CTCTTC	6 cut(s)	125, 199, 263, 446, 504, 550
EciI	GGCGGA	2 cut(s)	341, 364
Eco24I	GRGCYC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	108
Eco57I	CTGAAG	1 cut(s)	675
EcoO109I	RGGNCCY	3 cut(s)	143, 189, 190
EcoT38I	GRGCYC	1 cut(s)	193
Esp3I	CGTCTC	2 cut(s)	450, 490
FaeI	CATG	1 cut(s)	62
FaiI	YATR	5 cut(s)	60, 114, 186, 446, 623
FalI	AAGNNNNNCTT	4 cut(s)	476, 508, 544, 576
FatI	CATG	1 cut(s)	58
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	4 cut(s)	99, 166, 462, 465
FokI	GGATG	4 cut(s)	99, 296, 617, 629
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	4 cut(s)	99, 166, 462, 465
FspBI	CTAG	1 cut(s)	239
FspI	TGCGCA	1 cut(s)	321
GlaI	GCGC	1 cut(s)	321
GluI	GCNGC	4 cut(s)	99, 166, 462, 465
GsaI	CCCAGC	2 cut(s)	86, 197
HaeIII	GGCC	2 cut(s)	144, 191
HapII	CCGG	1 cut(s)	667
HgaI	GACGC	1 cut(s)	467
HhaI	GCGC	1 cut(s)	322
Hin1II	CATG	1 cut(s)	62
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HinfI	GANTC	2 cut(s)	76, 261
HpaII	CCGG	1 cut(s)	667
HphI	GGTGA	2 cut(s)	325, 380
Hpy188I	TCNGA	3 cut(s)	66, 394, 713
Hpy188III	TCNNGA	4 cut(s)	265, 374, 564, 682
HpyAV	CCTTC	1 cut(s)	539
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	1 cut(s)	592
HpyF10VI	GCNNNNNNNGC	4 cut(s)	150, 218, 355, 436
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	1 cut(s)	62
HspAI	GCGC	1 cut(s)	320
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	2 cut(s)	370, 412
LguI	GCTCTTC	1 cut(s)	550
LmnI	GCTCC	1 cut(s)	436
Lsp1109I	GCAGC	3 cut(s)	85, 473, 476
LweI	GCATC	1 cut(s)	37
MaeI	CTAG	1 cut(s)	239
MaeII	ACGT	1 cut(s)	337
MalI	GATC	2 cut(s)	372, 414
MboI	GATC	2 cut(s)	370, 412
MfeI	CAATTG	1 cut(s)	431
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	1 cut(s)	431
MnlI	CCTC	4 cut(s)	264, 499, 505, 508
MroXI	GAANNNNTTC	2 cut(s)	260, 559
MseI	TTAA	3 cut(s)	342, 551, 645
MspA1I	CMGCKG	1 cut(s)	82
MspI	CCGG	1 cut(s)	667
MspR9I	CCNGG	1 cut(s)	668
MunI	CAATTG	1 cut(s)	431
MvnI	CGCG	1 cut(s)	472
MwoI	GCNNNNNNNGC	4 cut(s)	150, 218, 355, 436
NciI	CCSGG	1 cut(s)	668
NdeII	GATC	2 cut(s)	370, 412
NlaIII	CATG	1 cut(s)	62
NlaIV	GGNNCC	2 cut(s)	191, 192
NsbI	TGCGCA	1 cut(s)	321
NspI	RCATGY	1 cut(s)	62
PciI	ACATGT	1 cut(s)	58
PciSI	GCTCTTC	1 cut(s)	550
PdmI	GAANNNNTTC	2 cut(s)	260, 559
PfeI	GAWTC	2 cut(s)	76, 261
PkrI	GCNGC	4 cut(s)	100, 167, 463, 466
PscI	ACATGT	1 cut(s)	58
PspFI	CCCAGC	2 cut(s)	82, 193
PspN4I	GGNNCC	2 cut(s)	191, 192
PspOMI	GGGCCC	1 cut(s)	189
PspPI	GGNCC	4 cut(s)	108, 143, 189, 190
PsrI	GAACNNNNNNTAC	2 cut(s)	45, 77
RsaI	GTAC	2 cut(s)	12, 34
RsaNI	GTAC	2 cut(s)	11, 33
SapI	GCTCTTC	1 cut(s)	550
SaqAI	TTAA	3 cut(s)	342, 551, 645
SatI	GCNGC	4 cut(s)	99, 166, 462, 465
Sau3AI	GATC	2 cut(s)	370, 412
Sau96I	GGNCC	4 cut(s)	108, 143, 189, 190
ScrFI	CCNGG	1 cut(s)	668
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	9 cut(s)	113, 217, 240, 340, 370, 550, 562, 651, 679
SfaNI	GCATC	1 cut(s)	37
SinI	GGWCC	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	493
SmoI	CTYRAG	1 cut(s)	493
Sse9I	AATT	1 cut(s)	431
SsiI	CCGC	6 cut(s)	80, 163, 166, 326, 349, 472
SspI	AATATT	2 cut(s)	279, 693
SspMI	CTAG	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	666
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	1 cut(s)	563
TasI	AATT	1 cut(s)	431
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	2 cut(s)	76, 261
Tru1I	TTAA	3 cut(s)	342, 551, 645
Tru9I	TTAA	3 cut(s)	342, 551, 645
TscAI	CASTG	2 cut(s)	538, 658
TseI	GCWGC	3 cut(s)	98, 461, 464
TspDTI	ATGAA	2 cut(s)	621, 645
TspRI	CASTG	2 cut(s)	538, 658
VpaK11BI	GGWCC	1 cut(s)	108
XceI	RCATGY	1 cut(s)	62
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79
XmnI	GAANNNNTTC	2 cut(s)	260, 559
XspI	CTAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.