Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0009948

Physical Location & Seq

Genomic Coordinates Forward (+)

5520916 .. 5523292

Gene Structure 2377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG071400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAAGAAGCTGGCCAGAACATTCAGAAAGTCTGAGGACGATGACCTCTCTCTTCCTACTCGGGACGACCCGGCTCCCATGGACTCCCAAGAACAAGAGGAATTGGTTCGATCCTTCGAAAGGAACCAAGCTCAACAAAGTCGTTTCTGGAGGGTTTTTTTTGCATCACTTCTCTTCTGCTTCGCTGCGTTTCTTATGTACTCAATCTTTCATCAGGTTTCGTATCCATGGGAACTGCGTTATCATGCTTACTTCATGGAGGAGGTGCACTCATGGATAATTATATCTGCAGGTGTTTTGTTAACCCTATACTTATCATCAGTTGATAGTAGAGTCATGTATAGCCTTACAATTAAAGTGCTGAACCCGCTTTTGTATTCATATATTGCGAATTGTTTGCCCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

15.99

Weight (kDa)

5.88

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26240
fragaria_vesca	FvH4_1g06740
malus_domestica	MD02G1072300.v1.1 MD15G1202100.v1.1
prunus_persica	Prupe.7G215100_v2.0.a1
pyrus_communis	pycom02g05630 pycom15g17950
rosa_chinensis	RchiOBHm_Chr2g0092481 RchiOBHm_Chr7g0226351
rosa_laevigata	RLG00000016317
rosa_multiflora	Rmu_sc0002503.1_g000015 Rmu_sc0002503.1_g000016 Rmu_sc0023787.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149060
rosa_rugosa	Rorug02G0026900 Rorug02G0027100
rosa_samantha	Rh2AG072800 Rh2BG073400 Rh2DG071400 Rh2DG071500
rosa_wichuraiana	Rw2G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	281
Acc36I	ACCTGC	1 cut(s)	281
AciI	CCGC	1 cut(s)	368
AclWI	GGATC	1 cut(s)	105
AcoI	YGGCCR	1 cut(s)	12
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	120
AluBI	AGCT	2 cut(s)	10, 131
AluI	AGCT	2 cut(s)	10, 131
Alw21I	GWGCWC	1 cut(s)	270
Alw44I	GTGCAC	1 cut(s)	266
AlwI	GGATC	1 cut(s)	105
Ama87I	CYCGRG	1 cut(s)	60
AoxI	GGCC	1 cut(s)	12
ApaLI	GTGCAC	1 cut(s)	266
ApeKI	GCWGC	1 cut(s)	185
Asp700I	GAANNNNTTC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	71
AsuII	TTCGAA	1 cut(s)	117
AvaI	CYCGRG	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	270
BalI	TGGCCA	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	1 cut(s)	172
BcgI	CGANNNNNNTGC	1 cut(s)	379
BciVI	GTATCC	1 cut(s)	234
BcnI	CCSGG	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	288
BfuAI	ACCTGC	1 cut(s)	281
BfuI	GTATCC	1 cut(s)	234
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme1390I	CCNGG	1 cut(s)	71
BmeT110I	CYCGRG	1 cut(s)	60
BmiI	GGNNCC	2 cut(s)	75, 125
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	1 cut(s)	173
BplI	GAGNNNNNCTC	2 cut(s)	254, 286
BpmI	CTGGAG	1 cut(s)	169
Bpu14I	TTCGAA	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	78, 227
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
BseDI	CCNNGG	2 cut(s)	78, 227
BseLI	CCNNNNNNNGG	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	275
BseSI	GKGCMC	1 cut(s)	270
BseXI	GCAGC	1 cut(s)	172
BshFI	GGCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	270
BsiHKCI	CYCGRG	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	14
BsoBI	CYCGRG	1 cut(s)	60
Bsp119I	TTCGAA	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	110
Bsp19I	CCATGG	2 cut(s)	78, 227
BspACI	CCGC	1 cut(s)	368
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	1 cut(s)	25
BspLI	GGNNCC	2 cut(s)	75, 125
BspMAI	CTGCAG	1 cut(s)	292
BspMI	ACCTGC	1 cut(s)	281
BspPI	GGATC	1 cut(s)	105
BspT104I	TTCGAA	1 cut(s)	117
BssECI	CCNNGG	2 cut(s)	78, 227
BssMI	GATC	1 cut(s)	110
BssT1I	CCWWGG	2 cut(s)	78, 227
Bst6I	CTCTTC	2 cut(s)	57, 179
BstBI	TTCGAA	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	33
BstDSI	CCRYGG	2 cut(s)	78, 227
BstENI	CCTNNNNNAGG	1 cut(s)	118
BstKTI	GATC	1 cut(s)	113
BstMBI	GATC	1 cut(s)	110
BstMWI	GCNNNNNNNGC	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	69
BstSFI	CTRYAG	1 cut(s)	288
BstSLI	GKGCMC	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	172
BsuI	GTATCC	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	14
BtgI	CCRYGG	2 cut(s)	78, 227
BveI	ACCTGC	1 cut(s)	281
Cac8I	GCNNGC	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	6 cut(s)	79, 228, 245, 256, 273, 337
CviJI	RGCY	5 cut(s)	10, 14, 74, 131, 345
CviKI_1	RGCY	5 cut(s)	10, 14, 74, 131, 345
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	1 cut(s)	112
DpnII	GATC	1 cut(s)	110
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	2 cut(s)	57, 179
EarI	CTCTTC	2 cut(s)	57, 179
Eco130I	CCWWGG	2 cut(s)	78, 227
Eco88I	CYCGRG	1 cut(s)	60
EcoNI	CCTNNNNNAGG	1 cut(s)	118
EcoT14I	CCWWGG	2 cut(s)	78, 227
ErhI	CCWWGG	2 cut(s)	78, 227
FaeI	CATG	6 cut(s)	82, 231, 248, 259, 276, 340
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	6 cut(s)	78, 227, 244, 255, 272, 336
FauI	CCCGC	1 cut(s)	375
Fnu4HI	GCNGC	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	186
GsuI	CTGGAG	1 cut(s)	169
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	1 cut(s)	71
Hin1II	CATG	6 cut(s)	82, 231, 248, 259, 276, 340
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HinfI	GANTC	2 cut(s)	83, 333
HpaI	GTTAAC	1 cut(s)	303
HpaII	CCGG	1 cut(s)	71
Hpy166II	GTNNAC	2 cut(s)	268, 303
Hpy188I	TCNGA	2 cut(s)	26, 34
Hpy188III	TCNNGA	2 cut(s)	62, 148
Hpy8I	GTNNAC	2 cut(s)	268, 303
HpyAV	CCTTC	1 cut(s)	124
HpyCH4V	TGCA	3 cut(s)	164, 268, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	367
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	6 cut(s)	82, 231, 248, 259, 276, 340
KspAI	GTTAAC	1 cut(s)	303
Kzo9I	GATC	1 cut(s)	110
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	5 cut(s)	28, 84, 133, 200, 276
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	1 cut(s)	173
MalI	GATC	1 cut(s)	112
MboI	GATC	1 cut(s)	110
MboII	GAAGA	3 cut(s)	16, 44, 166
MhlI	GDGCHC	1 cut(s)	270
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	4 cut(s)	101, 279, 351, 391
MluNI	TGGCCA	1 cut(s)	14
MlyI	GAGTC	2 cut(s)	77, 342
MnlI	CCTC	6 cut(s)	28, 56, 91, 144, 253, 256
Mox20I	TGGCCA	1 cut(s)	14
MroXI	GAANNNNTTC	1 cut(s)	105
MscI	TGGCCA	1 cut(s)	14
MseI	TTAA	2 cut(s)	302, 354
Msp20I	TGGCCA	1 cut(s)	14
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	367
NciI	CCSGG	1 cut(s)	71
NcoI	CCATGG	2 cut(s)	78, 227
NdeII	GATC	1 cut(s)	110
NlaIII	CATG	6 cut(s)	82, 231, 248, 259, 276, 340
NlaIV	GGNNCC	2 cut(s)	75, 125
NspV	TTCGAA	1 cut(s)	117
PaqCI	CACCTGC	1 cut(s)	281
PdmI	GAANNNNTTC	1 cut(s)	105
PkrI	GCNGC	1 cut(s)	187
PleI	GAGTC	2 cut(s)	77, 341
PpsI	GAGTC	2 cut(s)	77, 341
PspN4I	GGNNCC	2 cut(s)	75, 125
PstI	CTGCAG	1 cut(s)	292
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	302, 354
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	1 cut(s)	110
SchI	GAGTC	2 cut(s)	77, 342
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	6 cut(s)	12, 48, 133, 219, 267, 295
SfaNI	GCATC	1 cut(s)	173
SfcI	CTRYAG	1 cut(s)	288
SfuI	TTCGAA	1 cut(s)	117
Sse9I	AATT	4 cut(s)	101, 279, 351, 391
SsiI	CCGC	1 cut(s)	368
StyD4I	CCNGG	1 cut(s)	69
StyI	CCWWGG	2 cut(s)	78, 227
TaqI	TCGA	2 cut(s)	109, 117
TasI	AATT	4 cut(s)	101, 279, 351, 391
TatI	WGTACW	1 cut(s)	198
Tru1I	TTAA	2 cut(s)	302, 354
Tru9I	TTAA	2 cut(s)	302, 354
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	4 cut(s)	17, 200, 244, 369
VneI	GTGCAC	1 cut(s)	266
XagI	CCTNNNNNAGG	1 cut(s)	118
XmnI	GAANNNNTTC	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.