AT4G26240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009948
Physical Location & Seq
Reverse (-)
13286481 .. 13289057
2577 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G26240.1

Sequence Viewer

Length: 597 bp
ATGAAGAAGTTAGCGAGAAAATGGCGGAGAACTCGTCGTGACGAAGATGATGATAAGTTCGTCCTTCCTACTTCTGAAGACGTCGATTCTCGGCCTATTGATACGCAAGAGCAGGAGGAGTACGTTCGGTATCTTGAGGAAGCTCATGCTCAGCAAAGTCTTCAATGGAGGAGCGTGTTTGTGGTTCTTCTGATCTGCTTTGGAGCTTTCCTCTTCTACTCCATTTTCCAGCAGTTCATGTCACCATGGGAACTGCGGTATCATGCCTACTTTATGGAAGATCTCAAGTCATGGATGGTCATTTCAGCTGAGTGGATCGCTATCATGGCTTGCTCCCTCTCCATTGTCGGGCTACGAGATAAGAAGAATGATCATAGACGATGGTTCTGGTACTCTTGTGTTGTTGGATCTGCATTGACCATCTTTTGGCTTTATTACTTGCTGAGGCTTCCGAAATTCCGGTGGGATGCTATCTGGCTTCCGTTTGGGCCGCTTTGTGGAGCTGGAATTTGTCTATACGTGGACCATCTTCTAGAGGAGTCATCTGAGGAAGTGAAAAAACTGAGGAACTATATGTATGCATATAAAGCACGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

23.96

Weight (kDa)

7.62

Isoelectric Point (pI)

69.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 84
AccB7I CCANNNNNTGG 1 cut(s) 426
AciI CCGC 3 cut(s) 25, 256, 491
AclWI GGATC 2 cut(s) 323, 415
AcsI RAATTY 2 cut(s) 455, 507
AcuI CTGAAG 1 cut(s) 96
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 2 cut(s) 122, 392
AfiI CCNNNNNNNGG 3 cut(s) 348, 426, 497
AgsI TTSAA 1 cut(s) 164
AluBI AGCT 4 cut(s) 143, 206, 308, 503
AluI AGCT 4 cut(s) 143, 206, 308, 503
AlwI GGATC 2 cut(s) 323, 415
AoxI GGCC 2 cut(s) 92, 488
ApoI RAATTY 2 cut(s) 455, 507
AspS9I GGNCC 2 cut(s) 488, 523
AsuHPI GGTGA 1 cut(s) 234
AvaII GGWCC 1 cut(s) 523
BaeI ACNNNNGTAYC 4 cut(s) 242, 275, 382, 415
BbsI GAAGAC 2 cut(s) 84, 152
BbvCI CCTCAGC 1 cut(s) 443
BccI CCATC 4 cut(s) 289, 375, 428, 534
BclI TGATCA 1 cut(s) 370
BfaI CTAG 1 cut(s) 533
BglII AGATCT 1 cut(s) 280
BisI GCNGC 1 cut(s) 491
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 492
Bme18I GGWCC 1 cut(s) 523
BmgT120I GGNCC 2 cut(s) 488, 523
BmsI GCATC 1 cut(s) 457
BpiI GAAGAC 2 cut(s) 84, 152
BplI GAGNNNNNCTC 2 cut(s) 195, 227
Bpu10I CCTNAGC 1 cut(s) 443
Bpu1102I GCTNAGC 1 cut(s) 150
BpuEI CTTGAG 2 cut(s) 155, 269
BsaAI YACGTR 1 cut(s) 520
BsaBI GATNNNNATC 1 cut(s) 320
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 245
BsaWI WCCGGW 1 cut(s) 459
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 3 cut(s) 348, 426, 497
Bse8I GATNNNNATC 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 245
BseGI GGATG 2 cut(s) 300, 472
BseJI GATNNNNATC 1 cut(s) 320
BseLI CCNNNNNNNGG 3 cut(s) 348, 426, 497
BseMII CTCAG 5 cut(s) 164, 300, 434, 537, 554
BseRI GAGGAG 3 cut(s) 131, 184, 551
BshFI GGCC 2 cut(s) 94, 490
BsiSI CCGG 1 cut(s) 460
BslI CCNNNNNNNGG 3 cut(s) 348, 426, 497
BsnI GGCC 2 cut(s) 94, 490
Bsp143I GATC 5 cut(s) 192, 280, 315, 370, 407
Bsp1720I GCTNAGC 1 cut(s) 150
Bsp19I CCATGG 1 cut(s) 245
BspACI CCGC 3 cut(s) 25, 256, 491
BspANI GGCC 2 cut(s) 94, 490
BspCNI CTCAG 5 cut(s) 163, 301, 435, 538, 555
BspPI GGATC 2 cut(s) 323, 415
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 5 cut(s) 192, 280, 315, 370, 407
BssNI GRCGYC 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 594
Bst6I CTCTTC 1 cut(s) 218
BstACI GRCGYC 1 cut(s) 81
BstBAI YACGTR 1 cut(s) 520
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 5 cut(s) 150, 309, 443, 546, 563
BstDSI CCRYGG 1 cut(s) 245
BstF5I GGATG 2 cut(s) 300, 472
BstKTI GATC 5 cut(s) 195, 283, 318, 373, 410
BstMBI GATC 5 cut(s) 192, 280, 315, 370, 407
BstMWI GCNNNNNNNGC 2 cut(s) 326, 587
BstV2I GAAGAC 2 cut(s) 84, 152
BstX2I RGATCY 2 cut(s) 280, 407
BstYI RGATCY 2 cut(s) 280, 407
BsuRI GGCC 2 cut(s) 94, 490
BtgI CCRYGG 1 cut(s) 245
BtsCI GGATG 2 cut(s) 300, 472
Cac8I GCNNGC 1 cut(s) 331
Cfr13I GGNCC 2 cut(s) 488, 523
Csp6I GTAC 2 cut(s) 121, 391
CviAII CATG 6 cut(s) 146, 238, 246, 263, 291, 325
CviQI GTAC 2 cut(s) 121, 391
DdeI CTNAG 5 cut(s) 150, 309, 443, 546, 563
DpnI GATC 5 cut(s) 194, 282, 317, 372, 409
DpnII GATC 5 cut(s) 192, 280, 315, 370, 407
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
EciI GGCGGA 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 245
Eco47I GGWCC 1 cut(s) 523
Eco57I CTGAAG 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 245
EcoT22I ATGCAT 1 cut(s) 583
ErhI CCWWGG 1 cut(s) 245
FaeI CATG 6 cut(s) 149, 241, 249, 266, 294, 328
FatI CATG 6 cut(s) 145, 237, 245, 262, 290, 324
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 1 cut(s) 491
FokI GGATG 2 cut(s) 307, 479
Fsp4HI GCNGC 1 cut(s) 491
FspBI CTAG 1 cut(s) 533
GluI GCNGC 1 cut(s) 491
HaeIII GGCC 2 cut(s) 94, 490
HapII CCGG 1 cut(s) 460
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 6 cut(s) 149, 241, 249, 266, 294, 328
HinfI GANTC 2 cut(s) 86, 539
HpaII CCGG 1 cut(s) 460
HphI GGTGA 1 cut(s) 234
Hpy166II GTNNAC 1 cut(s) 523
Hpy188I TCNGA 4 cut(s) 76, 192, 453, 547
Hpy188III TCNNGA 3 cut(s) 38, 134, 533
Hpy8I GTNNAC 1 cut(s) 523
Hpy99I CGWCG 2 cut(s) 39, 86
HpyAV CCTTC 1 cut(s) 74
HpyCH4III ACNGT 1 cut(s) 594
HpyCH4IV ACGT 3 cut(s) 81, 123, 519
HpyCH4V TGCA 2 cut(s) 413, 581
HpyF10VI GCNNNNNNNGC 2 cut(s) 326, 587
HpyF3I CTNAG 5 cut(s) 150, 309, 443, 546, 563
HpySE526I ACGT 3 cut(s) 81, 123, 519
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 6 cut(s) 149, 241, 249, 266, 294, 328
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 5 cut(s) 192, 280, 315, 370, 407
LmnI GCTCC 4 cut(s) 171, 203, 338, 500
LpnPI CCDG 6 cut(s) 98, 242, 373, 460, 473, 489
LweI GCATC 1 cut(s) 457
MaeI CTAG 1 cut(s) 533
MaeII ACGT 3 cut(s) 81, 123, 519
MaeIII GTNAC 2 cut(s) 38, 240
MalI GATC 5 cut(s) 194, 282, 317, 372, 409
MboI GATC 5 cut(s) 192, 280, 315, 370, 407
MboII GAAGA 9 cut(s) 16, 56, 89, 152, 179, 205, 290, 376, 521
MflI RGATCY 2 cut(s) 280, 407
MluCI AATT 2 cut(s) 455, 507
MlyI GAGTC 1 cut(s) 548
MmeI TCCRAC 1 cut(s) 385
MnlI CCTC 9 cut(s) 109, 130, 162, 221, 347, 438, 529, 541, 558
Mph1103I ATGCAT 1 cut(s) 583
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 1 cut(s) 460
MwoI GCNNNNNNNGC 2 cut(s) 326, 587
NcoI CCATGG 1 cut(s) 245
NdeII GATC 5 cut(s) 192, 280, 315, 370, 407
NlaIII CATG 6 cut(s) 149, 241, 249, 266, 294, 328
NmeAIII GCCGAG 1 cut(s) 70
NmuCI GTSAC 2 cut(s) 38, 240
NsiI ATGCAT 1 cut(s) 583
PfeI GAWTC 1 cut(s) 86
PflMI CCANNNNNTGG 1 cut(s) 426
PkrI GCNGC 1 cut(s) 492
PleI GAGTC 1 cut(s) 547
PpsI GAGTC 1 cut(s) 547
Ppu21I YACGTR 1 cut(s) 520
PspPI GGNCC 2 cut(s) 488, 523
PsuI RGATCY 2 cut(s) 280, 407
PvuII CAGCTG 1 cut(s) 308
RsaI GTAC 2 cut(s) 122, 392
RsaNI GTAC 2 cut(s) 121, 391
SatI GCNGC 1 cut(s) 491
Sau3AI GATC 5 cut(s) 192, 280, 315, 370, 407
Sau96I GGNCC 2 cut(s) 488, 523
SchI GAGTC 1 cut(s) 548
SetI ASST 7 cut(s) 84, 126, 145, 208, 310, 505, 522
SfaNI GCATC 1 cut(s) 457
SinI GGWCC 1 cut(s) 523
SmlI CTYRAG 2 cut(s) 134, 284
SmoI CTYRAG 2 cut(s) 134, 284
Sse9I AATT 2 cut(s) 455, 507
SsiI CCGC 3 cut(s) 25, 256, 491
SspMI CTAG 1 cut(s) 533
StyI CCWWGG 1 cut(s) 245
TaaI ACNGT 1 cut(s) 594
TaiI ACGT 3 cut(s) 84, 126, 522
TaqI TCGA 1 cut(s) 84
TasI AATT 2 cut(s) 455, 507
TauI GCSGC 1 cut(s) 493
TfiI GAWTC 1 cut(s) 86
TseFI GTSAC 2 cut(s) 38, 240
Tsp45I GTSAC 2 cut(s) 38, 240
TspDTI ATGAA 2 cut(s) 17, 226
TspGWI ACGGA 1 cut(s) 471
Van91I CCANNNNNTGG 1 cut(s) 426
VpaK11BI GGWCC 1 cut(s) 523
XapI RAATTY 2 cut(s) 455, 507
XbaI TCTAGA 1 cut(s) 532
XspI CTAG 1 cut(s) 533
ZraI GACGTC 1 cut(s) 82
Zsp2I ATGCAT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.