Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002503.1

Orthogroup ID

OG0009948

Physical Location & Seq

Genomic Coordinates Reverse (-)

64857 .. 65507

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002503.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atggggagcgagagcaacctgaagacatgggtttctgataagttaatggcattactcggatactctatgcccgtagttgttgaaatctttgcaagagtgtgtggtaaaacatctggtttaagacaatgccagataaagaaacgattcaggaagagggcaatattggatgagaaagatggaaatgatgatgatggggtgattgcacaggcggaaaagaaacgtgttaaaaggcggaactcgctggataaaggtgatcgtgagaatggttcagagtcagaagaagaaagactgcgtgatcaaagagagaaagagcaattggagcaaaatataaggaagagggacgcagcagccacgcggaaagtagcaaagaaaaacttgagacgaaaggaggaagaggaggctgttcgaaaaaccagtgctgatattgaaggtttaagaagagcttcgagacaacaatatctagagaaaagagtgcaaaagaaactggatgaaatcagggatgatatagaagatgaggactacttaagctcactgaagcagaataccgggagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031047 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

184

Amino Acids

21.38

Weight (kDa)

9.45

Isoelectric Point (pI)

63.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26240
fragaria_vesca	FvH4_1g06740
malus_domestica	MD02G1072300.v1.1 MD15G1202100.v1.1
prunus_persica	Prupe.7G215100_v2.0.a1
pyrus_communis	pycom02g05630 pycom15g17950
rosa_chinensis	RchiOBHm_Chr2g0092481 RchiOBHm_Chr7g0226351
rosa_laevigata	RLG00000016317
rosa_multiflora	Rmu_sc0002503.1_g000015 Rmu_sc0002503.1_g000016 Rmu_sc0023787.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149060
rosa_rugosa	Rorug02G0026900 Rorug02G0027100
rosa_samantha	Rh2AG072800 Rh2BG073400 Rh2DG071400 Rh2DG071500
rosa_wichuraiana	Rw2G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	355
AciI	CCGC	3 cut(s)	209, 232, 355
AcuI	CTGAAG	2 cut(s)	41, 554
AflII	CTTAAG	1 cut(s)	523
AflIII	ACRYGT	1 cut(s)	220
AgsI	TTSAA	2 cut(s)	83, 428
AjuI	GAANNNNNNNTTGG	2 cut(s)	299, 331
AluBI	AGCT	2 cut(s)	443, 528
AluI	AGCT	2 cut(s)	443, 528
Alw26I	GTCTC	2 cut(s)	373, 442
ApeKI	GCWGC	2 cut(s)	344, 347
Asp700I	GAANNNNTTC	2 cut(s)	143, 442
AsuC2I	CCSGG	1 cut(s)	547
AsuHPI	GGTGA	2 cut(s)	208, 263
AsuII	TTCGAA	1 cut(s)	406
BbsI	GAAGAC	1 cut(s)	29
BbvI	GCAGC	2 cut(s)	356, 359
BccI	CCATC	2 cut(s)	170, 185
BciVI	GTATCC	1 cut(s)	53
BclI	TGATCA	1 cut(s)	295
BcnI	CCSGG	1 cut(s)	547
BcoDI	GTCTC	2 cut(s)	373, 442
BfaI	CTAG	1 cut(s)	461
BfrI	CTTAAG	1 cut(s)	523
BfuI	GTATCC	1 cut(s)	53
BisI	GCNGC	2 cut(s)	345, 348
BlsI	GCNGC	2 cut(s)	346, 349
Bme1390I	CCNGG	1 cut(s)	547
BmrFI	CCNGG	1 cut(s)	547
BpiI	GAAGAC	1 cut(s)	29
Bpu14I	TTCGAA	1 cut(s)	406
BpuEI	CTTGAG	1 cut(s)	397
BpuMI	CCSGG	1 cut(s)	547
Bse1I	ACTGG	2 cut(s)	414, 489
BseGI	GGATG	3 cut(s)	172, 493, 505
BseNI	ACTGG	2 cut(s)	414, 489
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	2 cut(s)	356, 359
Bsh1236I	CGCG	1 cut(s)	355
BsiSI	CCGG	1 cut(s)	546
BslFI	GGGAC	1 cut(s)	353
BsmAI	GTCTC	2 cut(s)	373, 442
BsmBI	CGTCTC	1 cut(s)	373
BsmFI	GGGAC	1 cut(s)	353
Bsp119I	TTCGAA	1 cut(s)	406
Bsp143I	GATC	2 cut(s)	253, 295
BspACI	CCGC	3 cut(s)	209, 232, 355
BspFNI	CGCG	1 cut(s)	355
BspQI	GCTCTTC	1 cut(s)	433
BspT104I	TTCGAA	1 cut(s)	406
BspTI	CTTAAG	1 cut(s)	523
BsrI	ACTGG	2 cut(s)	414, 489
BssMI	GATC	2 cut(s)	253, 295
Bst6I	CTCTTC	4 cut(s)	146, 329, 387, 433
BstAFI	CTTAAG	1 cut(s)	523
BstBI	TTCGAA	1 cut(s)	406
BstF5I	GGATG	3 cut(s)	172, 493, 505
BstFNI	CGCG	1 cut(s)	355
BstKTI	GATC	2 cut(s)	256, 298
BstMAI	GTCTC	2 cut(s)	373, 442
BstMBI	GATC	2 cut(s)	253, 295
BstMWI	GCNNNNNNNGC	2 cut(s)	238, 319
BstSCI	CCNGG	1 cut(s)	545
BstUI	CGCG	1 cut(s)	355
BstV1I	GCAGC	2 cut(s)	356, 359
BstV2I	GAAGAC	1 cut(s)	29
BsuI	GTATCC	1 cut(s)	53
BtsCI	GGATG	3 cut(s)	172, 493, 505
BtsIMutI	CAGTG	2 cut(s)	421, 530
CseI	GACGC	1 cut(s)	350
CviAII	CATG	1 cut(s)	27
CviJI	RGCY	4 cut(s)	350, 401, 443, 528
CviKI_1	RGCY	4 cut(s)	350, 401, 443, 528
DpnI	GATC	2 cut(s)	255, 297
DpnII	GATC	2 cut(s)	253, 295
Eam1104I	CTCTTC	4 cut(s)	146, 329, 387, 433
EarI	CTCTTC	4 cut(s)	146, 329, 387, 433
EciI	GGCGGA	2 cut(s)	224, 247
Eco57I	CTGAAG	2 cut(s)	41, 554
Esp3I	CGTCTC	1 cut(s)	373
FaeI	CATG	1 cut(s)	30
FaiI	YATR	4 cut(s)	28, 68, 329, 506
FalI	AAGNNNNNCTT	4 cut(s)	359, 391, 427, 459
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	1 cut(s)	26
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	2 cut(s)	345, 348
FokI	GGATG	3 cut(s)	179, 500, 512
Fsp4HI	GCNGC	2 cut(s)	345, 348
FspBI	CTAG	1 cut(s)	461
GluI	GCNGC	2 cut(s)	345, 348
HapII	CCGG	1 cut(s)	546
HgaI	GACGC	1 cut(s)	350
Hin1II	CATG	1 cut(s)	30
HinfI	GANTC	2 cut(s)	144, 272
HpaII	CCGG	1 cut(s)	546
HphI	GGTGA	2 cut(s)	208, 263
Hpy188I	TCNGA	4 cut(s)	37, 59, 271, 277
Hpy188III	TCNNGA	4 cut(s)	148, 257, 447, 461
HpyAV	CCTTC	1 cut(s)	422
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	3 cut(s)	92, 203, 475
HpyF10VI	GCNNNNNNNGC	2 cut(s)	238, 319
HpySE526I	ACGT	1 cut(s)	220
Hsp92II	CATG	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	2 cut(s)	253, 295
LguI	GCTCTTC	1 cut(s)	433
LmnI	GCTCC	2 cut(s)	6, 319
LpnPI	CCDG	9 cut(s)	32, 99, 133, 143, 191, 227, 427, 470, 481
Lsp1109I	GCAGC	2 cut(s)	356, 359
MaeI	CTAG	1 cut(s)	461
MaeII	ACGT	1 cut(s)	220
MalI	GATC	2 cut(s)	255, 297
MboI	GATC	2 cut(s)	253, 295
MboII	GAAGA	8 cut(s)	34, 163, 290, 293, 346, 404, 450, 521
MfeI	CAATTG	1 cut(s)	314
MluCI	AATT	1 cut(s)	314
MlyI	GAGTC	1 cut(s)	281
MnlI	CCTC	6 cut(s)	147, 330, 382, 388, 391, 508
MroXI	GAANNNNTTC	2 cut(s)	143, 442
MseI	TTAA	5 cut(s)	44, 119, 225, 434, 524
MspCI	CTTAAG	1 cut(s)	523
MspI	CCGG	1 cut(s)	546
MspR9I	CCNGG	1 cut(s)	547
MunI	CAATTG	1 cut(s)	314
MvnI	CGCG	1 cut(s)	355
MwoI	GCNNNNNNNGC	2 cut(s)	238, 319
NciI	CCSGG	1 cut(s)	547
NdeII	GATC	2 cut(s)	253, 295
NlaIII	CATG	1 cut(s)	30
NspV	TTCGAA	1 cut(s)	406
PciSI	GCTCTTC	1 cut(s)	433
PdmI	GAANNNNTTC	2 cut(s)	143, 442
PfeI	GAWTC	1 cut(s)	144
PkrI	GCNGC	2 cut(s)	346, 349
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
SapI	GCTCTTC	1 cut(s)	433
SaqAI	TTAA	5 cut(s)	44, 119, 225, 434, 524
SatI	GCNGC	2 cut(s)	345, 348
Sau3AI	GATC	2 cut(s)	253, 295
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	547
SetI	ASST	6 cut(s)	21, 223, 253, 433, 445, 530
SfuI	TTCGAA	1 cut(s)	406
SmlI	CTYRAG	2 cut(s)	376, 523
SmoI	CTYRAG	2 cut(s)	376, 523
Sse9I	AATT	1 cut(s)	314
SsiI	CCGC	3 cut(s)	209, 232, 355
SspI	AATATT	1 cut(s)	162
SspMI	CTAG	1 cut(s)	461
StyD4I	CCNGG	1 cut(s)	545
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	2 cut(s)	406, 446
TasI	AATT	1 cut(s)	314
TfiI	GAWTC	1 cut(s)	144
Tru1I	TTAA	5 cut(s)	44, 119, 225, 434, 524
Tru9I	TTAA	5 cut(s)	44, 119, 225, 434, 524
TscAI	CASTG	2 cut(s)	421, 537
TseI	GCWGC	2 cut(s)	344, 347
TspDTI	ATGAA	1 cut(s)	504
TspRI	CASTG	2 cut(s)	421, 537
Vha464I	CTTAAG	1 cut(s)	523
XbaI	TCTAGA	1 cut(s)	460
XmnI	GAANNNNTTC	2 cut(s)	143, 442
XspI	CTAG	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.