Rmu_sc0023787.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023787.1
OG0009948
Physical Location & Seq
Forward (+)
11459 .. 11880
422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023787.1_g000004.1.cds

Sequence Viewer

Length: 234 bp
atgaagaagctggccagaacattcagaaagtctgaggacgatgacctctctcttcctactcgggacgacccggctcccatggactcccaagaacaagaggaattggttcgatccttcgaaaggaaccaagctcaacaaagtcgtttctggagggttttttttgcatcacttctcttctgcttcgctgcgtttcttatgtactcaatctttcagcaggtttcgtatcctttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

9.24

Weight (kDa)

5.27

Isoelectric Point (pI)

64.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 205
AclWI GGATC 1 cut(s) 105
AcoI YGGCCR 1 cut(s) 12
AfaI GTAC 1 cut(s) 200
AfiI CCNNNNNNNGG 1 cut(s) 120
AluBI AGCT 2 cut(s) 10, 131
AluI AGCT 2 cut(s) 10, 131
AlwI GGATC 1 cut(s) 105
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 185
Asp700I GAANNNNTTC 1 cut(s) 105
AsuC2I CCSGG 1 cut(s) 71
AsuII TTCGAA 1 cut(s) 117
AvaI CYCGRG 1 cut(s) 60
BalI TGGCCA 1 cut(s) 14
BbvI GCAGC 1 cut(s) 172
BciVI GTATCC 1 cut(s) 234
BcnI CCSGG 1 cut(s) 71
BfuAI ACCTGC 1 cut(s) 205
BfuI GTATCC 1 cut(s) 234
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 1 cut(s) 71
BmeT110I CYCGRG 1 cut(s) 60
BmiI GGNNCC 2 cut(s) 75, 125
BmrFI CCNGG 1 cut(s) 71
BmsI GCATC 1 cut(s) 173
BpmI CTGGAG 1 cut(s) 169
Bpu14I TTCGAA 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 78
Bsc4I CCNNNNNNNGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 78
BseLI CCNNNNNNNGG 1 cut(s) 120
BseMII CTCAG 1 cut(s) 24
BseXI GCAGC 1 cut(s) 172
BshFI GGCC 1 cut(s) 14
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 1 cut(s) 14
BsoBI CYCGRG 1 cut(s) 60
Bsp119I TTCGAA 1 cut(s) 117
Bsp143I GATC 1 cut(s) 110
Bsp19I CCATGG 1 cut(s) 78
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 25
BspLI GGNNCC 2 cut(s) 75, 125
BspMI ACCTGC 1 cut(s) 205
BspPI GGATC 1 cut(s) 105
BspT104I TTCGAA 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 1 cut(s) 110
BssT1I CCWWGG 1 cut(s) 78
Bst6I CTCTTC 2 cut(s) 57, 179
BstBI TTCGAA 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 33
BstDSI CCRYGG 1 cut(s) 78
BstENI CCTNNNNNAGG 1 cut(s) 118
BstKTI GATC 1 cut(s) 113
BstMBI GATC 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 172
BsuI GTATCC 1 cut(s) 234
BsuRI GGCC 1 cut(s) 14
BtgI CCRYGG 1 cut(s) 78
BveI ACCTGC 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 12
Csp6I GTAC 1 cut(s) 199
CviAII CATG 1 cut(s) 79
CviJI RGCY 4 cut(s) 10, 14, 74, 131
CviKI_1 RGCY 4 cut(s) 10, 14, 74, 131
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 1 cut(s) 33
DpnI GATC 1 cut(s) 112
DpnII GATC 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 12
Eam1104I CTCTTC 2 cut(s) 57, 179
EarI CTCTTC 2 cut(s) 57, 179
Eco130I CCWWGG 1 cut(s) 78
Eco88I CYCGRG 1 cut(s) 60
EcoNI CCTNNNNNAGG 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 1 cut(s) 82
FaiI YATR 2 cut(s) 80, 197
FaqI GGGAC 1 cut(s) 77
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 186
Fsp4HI GCNGC 1 cut(s) 186
GluI GCNGC 1 cut(s) 186
GsuI CTGGAG 1 cut(s) 169
HaeIII GGCC 1 cut(s) 14
HapII CCGG 1 cut(s) 71
Hin1II CATG 1 cut(s) 82
HinfI GANTC 1 cut(s) 83
HpaII CCGG 1 cut(s) 71
Hpy188I TCNGA 2 cut(s) 26, 34
Hpy188III TCNNGA 2 cut(s) 62, 148
HpyAV CCTTC 1 cut(s) 124
HpyCH4V TGCA 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 33
Hsp92II CATG 1 cut(s) 82
Kzo9I GATC 1 cut(s) 110
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 4 cut(s) 28, 84, 133, 200
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 1 cut(s) 173
MalI GATC 1 cut(s) 112
MboI GATC 1 cut(s) 110
MboII GAAGA 3 cut(s) 16, 44, 166
MlsI TGGCCA 1 cut(s) 14
MluCI AATT 1 cut(s) 101
MluNI TGGCCA 1 cut(s) 14
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 4 cut(s) 28, 56, 91, 144
Mox20I TGGCCA 1 cut(s) 14
MroXI GAANNNNTTC 1 cut(s) 105
MscI TGGCCA 1 cut(s) 14
Msp20I TGGCCA 1 cut(s) 14
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 71
NciI CCSGG 1 cut(s) 71
NcoI CCATGG 1 cut(s) 78
NdeII GATC 1 cut(s) 110
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 2 cut(s) 75, 125
NspV TTCGAA 1 cut(s) 117
PdmI GAANNNNTTC 1 cut(s) 105
PkrI GCNGC 1 cut(s) 187
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
PspN4I GGNNCC 2 cut(s) 75, 125
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 1 cut(s) 110
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 71
SetI ASST 4 cut(s) 12, 48, 133, 219
SfaNI GCATC 1 cut(s) 173
SfuI TTCGAA 1 cut(s) 117
Sse9I AATT 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 69
StyI CCWWGG 1 cut(s) 78
TaqI TCGA 2 cut(s) 109, 117
TasI AATT 1 cut(s) 101
TatI WGTACW 1 cut(s) 198
TseI GCWGC 1 cut(s) 185
TspDTI ATGAA 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 118
XmnI GAANNNNTTC 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.