Rroxscaffold_2G00149070

IAA-amino acid hydrolase ILR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0010736
Physical Location & Seq
Reverse (-)
86683348 .. 86686247
2900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00149070.1

Sequence Viewer

Length: 1059 bp
ATGGCTTTCCCCAAATGGGTGTCTTTGATCTTCTTCATACTCTGTATGATTACGCCACTGCCCATTTCCTCAAACCAATCTTCGAGCCCAGAAGTGGAGCTGGCTCAAATCCCAGTCTTGTTTCTTGAACATGCTAAAAGAAACGAGCTTTTCGATCGTATGGTGAGTATCAGAAGGAAAATCCATGAAAACCCAGAGCTTTGTTATGAGGAATTTGAAACCAGCAAGCTTATCAGAGCTGAACTTGACCGGCTGGGCATCCCTTACAGATACCCTTTGGCTGAAACCGGCGTTGTTGGCCTTGTTGGGAGCGGTGGTCCACCCTTTGTTGCAATCAGAGCAGACATGGATGCTTTGGCTATGCAGGAGAGTGTGGAGTGGGAGCACAAGAGTAAAATTCCAGGGAAGATGCATGGATGTGGACATGATGCTCATGTTGCCATGCTTCTTGGAGCTGCAAGTATACTTCAGGAGTATCGCCACAAATTACAGGTTGTGACTGTTGGAAAATTCCACGGAGGTGGTGCATTTAATGTTATTCCAGATTCTGTTACAATTGGTGGTACTTTCAGGGCATTTTCAAAGGACAGCTTTATCCAACTTAAACAAAGAATCAAAGAGGTTATTACTAGACAAGCCAGTGTTCAGAGGTGCAATGCAACTGTCTTATTCAATGAAATTGCGCAGCCCTTTTACCCTGCAACTGTAAATGACAAAGATTTGCATGAGTACTTCCGGAAAGTTGCAGTCGATTTGGTGGGCCCTCAGAATGTATTTGAGAAGCAACCACTGATGGGGGCGGAAGACTTCTCATTCTATCAAGAAGTAATTCCAGGGTACTTCTTCTTTCTTGGTATGAAGAATGACTCTCAAGGACAGCTCAAACCAATGCATTCACCATATTTCAGAGTAAACGAAGACGTGCTTCCTTATGGAGCTGCATTCCATGCATCACTGGCCGCCAGGTACCTCCTGGAAAAGCAACCGAAATCTACCTCAACAGCAGACCAAAAAACGAGATCCACTTCAATGAAAGGGGACTTTCATGATGAACTATGA

Protein Analysis

352

Amino Acids

39.62

Weight (kDa)

6.64

Isoelectric Point (pI)

38.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M20 PF01546 111 - 321 1.1e-25 Peptidase family M20/M25/M40
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010736)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56650 AT5G56650 AT5G56660
fragaria_vesca FvH4_1g06730 FvH4_1g06730
malus_domestica MD02G1072200.v1.1 MD15G1202000.v1.1
prunus_persica Prupe.7G215300_v2.0.a1
pyrus_communis pycom02g05620 pycom15g17930
rosa_chinensis RchiOBHm_Chr2g0092471
rosa_laevigata RLG00000016315
rosa_multiflora Rmu_sc0004296.1_g000017 Rmu_sc0023787.1_g000002
rosa_roxburghii Rroxscaffold_2G00149070
rosa_rugosa Rorug02G0026900
rosa_samantha Rh2AG072700 Rh2BG073200 Rh2CG074500
rosa_wichuraiana Rw2G006020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 684
Acc65I GGTACC 1 cut(s) 966
AccB1I GGYRCC 1 cut(s) 966
AccBSI CCGCTC 1 cut(s) 312
AccI GTMKAC 1 cut(s) 463
AccIII TCCGGA 1 cut(s) 735
AciI CCGC 3 cut(s) 312, 800, 960
AclWI GGATC 1 cut(s) 1014
AcoI YGGCCR 1 cut(s) 957
AcsI RAATTY 3 cut(s) 212, 396, 509
AcuI CTGAAG 1 cut(s) 452
AfaI GTAC 4 cut(s) 565, 731, 839, 968
AfiI CCNNNNNNNGG 3 cut(s) 16, 94, 794
AgsI TTSAA 5 cut(s) 128, 218, 582, 673, 1029
AjiI CACGTC 1 cut(s) 922
AjnI CCWGG 4 cut(s) 400, 832, 962, 972
AleI CACNNNNGTG 1 cut(s) 519
AluBI AGCT 9 cut(s) 100, 148, 199, 229, 239, 455, 591, 880, 938
AluI AGCT 9 cut(s) 100, 148, 199, 229, 239, 455, 591, 880, 938
Alw21I GWGCWC 1 cut(s) 387
AlwI GGATC 1 cut(s) 1014
AlwNI CAGNNNCTG 1 cut(s) 548
Aor13HI TCCGGA 1 cut(s) 735
AoxI GGCC 3 cut(s) 298, 760, 957
ApaI GGGCCC 1 cut(s) 764
ApeKI GCWGC 3 cut(s) 455, 685, 938
ApoI RAATTY 3 cut(s) 212, 396, 509
Asp700I GAANNNNTTC 1 cut(s) 828
Asp718I GGTACC 1 cut(s) 966
AspLEI GCGC 1 cut(s) 685
AspS9I GGNCC 3 cut(s) 317, 760, 761
AsuHPI GGTGA 2 cut(s) 175, 888
AvaII GGWCC 1 cut(s) 317
BaeGI GKGCMC 1 cut(s) 764
BanI GGYRCC 1 cut(s) 966
BanII GRGCYC 2 cut(s) 89, 764
BbsI GAAGAC 2 cut(s) 810, 924
Bbv12I GWGCWC 1 cut(s) 387
BbvI GCAGC 3 cut(s) 442, 697, 925
BccI CCATC 1 cut(s) 787
BciT130I CCWGG 4 cut(s) 402, 834, 964, 974
BfaI CTAG 1 cut(s) 630
BisI GCNGC 4 cut(s) 456, 686, 939, 960
BlsI GCNGC 4 cut(s) 457, 687, 940, 961
BmcAI AGTACT 1 cut(s) 731
Bme1390I CCNGG 4 cut(s) 402, 834, 964, 974
Bme18I GGWCC 1 cut(s) 317
BmgBI CACGTC 1 cut(s) 922
BmgT120I GGNCC 3 cut(s) 317, 760, 761
BmiI GGNNCC 2 cut(s) 762, 968
BmrFI CCNGG 4 cut(s) 402, 834, 964, 974
BmrI ACTGGG 1 cut(s) 107
BmsI GCATC 5 cut(s) 267, 340, 399, 418, 959
BmuI ACTGGG 1 cut(s) 107
BpiI GAAGAC 2 cut(s) 810, 924
BpuEI CTTGAG 1 cut(s) 855
BsaJI CCNNGG 3 cut(s) 401, 514, 833
BsaWI WCCGGW 1 cut(s) 735
BsaXI ACNNNNNCTCC 2 cut(s) 301, 331
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 94, 794
Bse118I RCCGGY 2 cut(s) 249, 287
Bse1I ACTGG 3 cut(s) 113, 639, 960
Bse3DI GCAATG 1 cut(s) 661
BseAI TCCGGA 1 cut(s) 735
BseBI CCWGG 4 cut(s) 402, 834, 964, 974
BseDI CCNNGG 3 cut(s) 401, 514, 833
BseGI GGATG 3 cut(s) 258, 355, 422
BseLI CCNNNNNNNGG 3 cut(s) 16, 94, 794
BseMI GCAATG 1 cut(s) 661
BseMII CTCAG 1 cut(s) 779
BseNI ACTGG 3 cut(s) 113, 639, 960
BseSI GKGCMC 1 cut(s) 764
BseXI GCAGC 3 cut(s) 442, 697, 925
BseYI CCCAGC 1 cut(s) 253
Bsh1285I CGRYCG 1 cut(s) 157
BshFI GGCC 3 cut(s) 300, 762, 959
BshNI GGYRCC 1 cut(s) 966
BsiEI CGRYCG 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 387
BsiSI CCGG 3 cut(s) 250, 288, 736
BslFI GGGAC 1 cut(s) 1052
BslI CCNNNNNNNGG 3 cut(s) 16, 94, 794
BsmFI GGGAC 1 cut(s) 1052
BsmI GAATGC 2 cut(s) 892, 941
BsnI GGCC 3 cut(s) 300, 762, 959
Bsp120I GGGCCC 1 cut(s) 760
Bsp1286I GDGCHC 3 cut(s) 89, 387, 764
Bsp13I TCCGGA 1 cut(s) 735
Bsp143I GATC 3 cut(s) 27, 154, 1019
BspACI CCGC 3 cut(s) 312, 800, 960
BspANI GGCC 3 cut(s) 300, 762, 959
BspCNI CTCAG 1 cut(s) 778
BspEI TCCGGA 1 cut(s) 735
BspHI TCATGA 1 cut(s) 1045
BspLI GGNNCC 2 cut(s) 762, 968
BspPI GGATC 1 cut(s) 1014
BspT107I GGYRCC 1 cut(s) 966
BsrBI CCGCTC 1 cut(s) 312
BsrDI GCAATG 1 cut(s) 661
BsrFI RCCGGY 2 cut(s) 249, 287
BsrI ACTGG 3 cut(s) 113, 639, 960
BssAI RCCGGY 2 cut(s) 249, 287
BssECI CCNNGG 3 cut(s) 401, 514, 833
BssMI GATC 3 cut(s) 27, 154, 1019
BssNAI GTATAC 1 cut(s) 464
Bst1107I GTATAC 1 cut(s) 464
Bst2UI CCWGG 4 cut(s) 402, 834, 964, 974
Bst4CI ACNGT 3 cut(s) 502, 664, 706
BstAPI GCANNNNNTGC 1 cut(s) 947
BstC8I GCNNGC 2 cut(s) 102, 227
BstDEI CTNAG 1 cut(s) 765
BstDSI CCRYGG 1 cut(s) 514
BstF5I GGATG 3 cut(s) 258, 355, 422
BstHHI GCGC 1 cut(s) 685
BstKTI GATC 3 cut(s) 30, 157, 1022
BstMBI GATC 3 cut(s) 27, 154, 1019
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 5 cut(s) 297, 338, 437, 947, 956
BstNI CCWGG 4 cut(s) 402, 834, 964, 974
BstNSI RCATGY 1 cut(s) 134
BstSCI CCNGG 4 cut(s) 400, 832, 962, 972
BstSLI GKGCMC 1 cut(s) 764
BstV1I GCAGC 3 cut(s) 442, 697, 925
BstV2I GAAGAC 2 cut(s) 810, 924
BstX2I RGATCY 1 cut(s) 1019
BstXI CCANNNNNNTGG 1 cut(s) 521
BstYI RGATCY 1 cut(s) 1019
BstZ17I GTATAC 1 cut(s) 464
BsuRI GGCC 3 cut(s) 300, 762, 959
BtgI CCRYGG 1 cut(s) 514
BtrI CACGTC 1 cut(s) 922
BtsCI GGATG 3 cut(s) 258, 355, 422
BtsI GCAGTG 1 cut(s) 56
BtsIMutI CAGTG 4 cut(s) 56, 646, 788, 953
Cac8I GCNNGC 2 cut(s) 102, 227
CaiI CAGNNNCTG 1 cut(s) 548
CciI TCATGA 1 cut(s) 1045
CfoI GCGC 1 cut(s) 685
Cfr10I RCCGGY 2 cut(s) 249, 287
Cfr13I GGNCC 3 cut(s) 317, 760, 761
Csp6I GTAC 4 cut(s) 564, 730, 838, 967
CviQI GTAC 4 cut(s) 564, 730, 838, 967
DdeI CTNAG 1 cut(s) 765
DpnI GATC 3 cut(s) 29, 156, 1021
DpnII GATC 3 cut(s) 27, 154, 1019
EaeI YGGCCR 1 cut(s) 957
EciI GGCGGA 1 cut(s) 815
Eco24I GRGCYC 2 cut(s) 89, 764
Eco47I GGWCC 1 cut(s) 317
Eco57I CTGAAG 1 cut(s) 452
EcoO109I RGGNCCY 1 cut(s) 761
EcoRII CCWGG 4 cut(s) 400, 832, 962, 972
EcoT22I ATGCAT 3 cut(s) 414, 894, 952
EcoT38I GRGCYC 2 cut(s) 89, 764
FalI AAGNNNNNCTT 4 cut(s) 575, 607, 909, 941
FaqI GGGAC 1 cut(s) 1052
FblI GTMKAC 1 cut(s) 463
Fnu4HI GCNGC 4 cut(s) 456, 686, 939, 960
FokI GGATG 3 cut(s) 245, 362, 429
FriOI GRGCYC 2 cut(s) 89, 764
Fsp4HI GCNGC 4 cut(s) 456, 686, 939, 960
FspBI CTAG 1 cut(s) 630
FspI TGCGCA 1 cut(s) 684
GlaI GCGC 1 cut(s) 684
GluI GCNGC 4 cut(s) 456, 686, 939, 960
GsaI CCCAGC 1 cut(s) 257
HaeIII GGCC 3 cut(s) 300, 762, 959
HapII CCGG 3 cut(s) 250, 288, 736
HhaI GCGC 1 cut(s) 685
Hin6I GCGC 1 cut(s) 683
HinP1I GCGC 1 cut(s) 683
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 3 cut(s) 545, 612, 866
HpaII CCGG 3 cut(s) 250, 288, 736
HphI GGTGA 2 cut(s) 175, 888
Hpy166II GTNNAC 4 cut(s) 320, 422, 464, 913
Hpy188I TCNGA 6 cut(s) 173, 236, 338, 648, 768, 908
Hpy188III TCNNGA 6 cut(s) 125, 470, 542, 736, 821, 1046
Hpy8I GTNNAC 4 cut(s) 320, 422, 464, 913
HpyAV CCTTC 1 cut(s) 168
HpyCH4III ACNGT 3 cut(s) 502, 664, 706
HpyCH4IV ACGT 1 cut(s) 921
HpyF10VI GCNNNNNNNGC 5 cut(s) 297, 338, 437, 947, 956
HpyF3I CTNAG 1 cut(s) 765
HpySE526I ACGT 1 cut(s) 921
HspAI GCGC 1 cut(s) 683
Kpn2I TCCGGA 1 cut(s) 735
KpnI GGTACC 1 cut(s) 970
Kzo9I GATC 3 cut(s) 27, 154, 1019
LmnI GCTCC 5 cut(s) 97, 309, 382, 452, 935
Lsp1109I GCAGC 3 cut(s) 442, 697, 925
LweI GCATC 5 cut(s) 267, 340, 399, 418, 959
MaeI CTAG 1 cut(s) 630
MaeII ACGT 1 cut(s) 921
MaeIII GTNAC 2 cut(s) 496, 550
MalI GATC 3 cut(s) 29, 156, 1021
MbiI CCGCTC 1 cut(s) 312
MboI GATC 3 cut(s) 27, 154, 1019
MboII GAAGA 8 cut(s) 22, 25, 72, 418, 815, 835, 871, 929
MfeI CAATTG 1 cut(s) 555
MflI RGATCY 1 cut(s) 1019
MhlI GDGCHC 3 cut(s) 89, 387, 764
MluCI AATT 7 cut(s) 212, 396, 485, 509, 555, 678, 828
MlyI GAGTC 1 cut(s) 860
MmeI TCCRAC 2 cut(s) 484, 622
MnlI CCTC 8 cut(s) 79, 202, 512, 613, 642, 774, 980, 1006
Mph1103I ATGCAT 3 cut(s) 414, 894, 952
MroI TCCGGA 1 cut(s) 735
MroXI GAANNNNTTC 1 cut(s) 828
MseI TTAA 2 cut(s) 531, 603
MslI CAYNNNNRTG 3 cut(s) 417, 519, 1028
MspI CCGG 3 cut(s) 250, 288, 736
MspR9I CCNGG 4 cut(s) 402, 834, 964, 974
MunI CAATTG 1 cut(s) 555
Mva1269I GAATGC 2 cut(s) 892, 941
MvaI CCWGG 4 cut(s) 402, 834, 964, 974
MwoI GCNNNNNNNGC 5 cut(s) 297, 338, 437, 947, 956
NdeII GATC 3 cut(s) 27, 154, 1019
NlaIV GGNNCC 2 cut(s) 762, 968
NmuCI GTSAC 1 cut(s) 496
NsbI TGCGCA 1 cut(s) 684
NsiI ATGCAT 3 cut(s) 414, 894, 952
NspI RCATGY 1 cut(s) 134
OliI CACNNNNGTG 1 cut(s) 519
PagI TCATGA 1 cut(s) 1045
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PctI GAATGC 2 cut(s) 892, 941
PdmI GAANNNNTTC 1 cut(s) 828
PfeI GAWTC 2 cut(s) 545, 612
PfoI TCCNGGA 1 cut(s) 972
PkrI GCNGC 4 cut(s) 457, 687, 940, 961
Ple19I CGATCG 1 cut(s) 157
PleI GAGTC 1 cut(s) 860
PpsI GAGTC 1 cut(s) 860
Psp6I CCWGG 4 cut(s) 400, 832, 962, 972
PspFI CCCAGC 1 cut(s) 253
PspGI CCWGG 4 cut(s) 400, 832, 962, 972
PspN4I GGNNCC 2 cut(s) 762, 968
PspOMI GGGCCC 1 cut(s) 760
PspPI GGNCC 3 cut(s) 317, 760, 761
PstNI CAGNNNCTG 1 cut(s) 548
PsuI RGATCY 1 cut(s) 1019
PvuI CGATCG 1 cut(s) 157
RsaI GTAC 4 cut(s) 565, 731, 839, 968
RsaNI GTAC 4 cut(s) 564, 730, 838, 967
RseI CAYNNNNRTG 3 cut(s) 417, 519, 1028
SaqAI TTAA 2 cut(s) 531, 603
SatI GCNGC 4 cut(s) 456, 686, 939, 960
Sau3AI GATC 3 cut(s) 27, 154, 1019
Sau96I GGNCC 3 cut(s) 317, 760, 761
ScaI AGTACT 1 cut(s) 731
SchI GAGTC 1 cut(s) 860
ScrFI CCNGG 4 cut(s) 402, 834, 964, 974
SduI GDGCHC 3 cut(s) 89, 387, 764
SfaNI GCATC 5 cut(s) 267, 340, 399, 418, 959
SinI GGWCC 1 cut(s) 317
SmiMI CAYNNNNRTG 3 cut(s) 417, 519, 1028
SmlI CTYRAG 1 cut(s) 870
SmoI CTYRAG 1 cut(s) 870
Sse9I AATT 7 cut(s) 212, 396, 485, 509, 555, 678, 828
SsiI CCGC 3 cut(s) 312, 800, 960
SspMI CTAG 1 cut(s) 630
StyD4I CCNGG 4 cut(s) 400, 832, 962, 972
TaaI ACNGT 3 cut(s) 502, 664, 706
TaiI ACGT 1 cut(s) 924
TaqI TCGA 3 cut(s) 83, 153, 750
TasI AATT 7 cut(s) 212, 396, 485, 509, 555, 678, 828
TatI WGTACW 1 cut(s) 729
TauI GCSGC 1 cut(s) 962
TfiI GAWTC 2 cut(s) 545, 612
Tru1I TTAA 2 cut(s) 531, 603
Tru9I TTAA 2 cut(s) 531, 603
TscAI CASTG 4 cut(s) 63, 646, 795, 960
TseFI GTSAC 1 cut(s) 496
TseI GCWGC 3 cut(s) 455, 685, 938
Tsp45I GTSAC 1 cut(s) 496
TspDTI ATGAA 6 cut(s) 25, 201, 690, 872, 1034, 1046
TspGWI ACGGA 1 cut(s) 531
TspRI CASTG 4 cut(s) 63, 646, 795, 960
VpaK11BI GGWCC 1 cut(s) 317
XapI RAATTY 3 cut(s) 212, 396, 509
XceI RCATGY 1 cut(s) 134
XcmI CCANNNNNNNNNTGG 1 cut(s) 970
XmiI GTMKAC 1 cut(s) 463
XmnI GAANNNNTTC 1 cut(s) 828
XspI CTAG 1 cut(s) 630
ZrmI AGTACT 1 cut(s) 731
Zsp2I ATGCAT 3 cut(s) 414, 894, 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.