Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009056

Physical Location & Seq

Genomic Coordinates Forward (+)

22945419 .. 22946807

Gene Structure 1389 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G56720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGAGTTCGTTGGAGAAGAAATTAATTATACTTTTGTGATTCAGAAAGTTTTGGTTCTACTGTTTTGTGTTGGTTTGTCATGGAAAATGATAATATACATGTGTAATTTGTTAAACATTGAGAAAGATCCTATAAGGGTTTTGATTACCGGTGCAGCAGGAAACATAGGATATGCAATTGCTCCAATGATTGCAAGAGGTATTATGCTAGGTCCAGATCAACCCATGATTCTGCATTTACTTGATATAGAGCCAGCTTCAAGTTCACTAGAAGCTGTGAAAATGGAGCTTCAAGATTCAGCTTTCCCTCTTCTCAAAGGCGTTATCGCGACAACAAATGTTGTTGAAGCATGTAAAGATGTGAATATCGTGATAATGATCGGCGGATTCCCAAGGATAGCAGGCATGGAAAGAAAAGATGTGATGTCGAAAAATGTTGTGATATATAAAGCTCAAGCTTCGGCTTTAGAGCGTTATGCATCAGATGATTGCAAGGTTCTTGTTGTCGCAAACCCTGCAAACACTAATGCTCTGATCTTAAAAGAGTTTGCGCCATCAATCCCGGAAGAAAATATCACTTGCCTGACACGACTCGACCATAATCGAGCTCTAGCTCAGCTTGCAGATAAGCTAAGTGTTCCCGTGAGCAGTGTAAAGAACGTGATCGTTTGGGGTAACCATTCTTCAACTCAATATCCCGACACCAATCACGCAACAGTCTCTACAAAAACTGGAGACAGACCGTTAAAAGAACTAGTCACAGATCACAACTGGCTGAAGAACGAGTTTATCGTGGAAGTTCAGCAACGCGGTGCAGCTGTTTTAAGAGCACGGAAACAGTCGAGTGCTTTTTCCGCTGCTGGTGCAGCTTGTGACCATATCCGTGATTGGTTTCTTGGAACCCCTAAAGGAACTTGGGTTTCTATGGGTGTTTGTTCTGACGGCTCATATGGTATACCACCTGGTTTGGTTTACTCGTTTCCGGTTATCTGTGAGAAAGGGAGTTGGAAGATCGTACAAGGACTCAGTATAGACGAGTTTTCGAGGGAGAAAATGGATGACTCTGCACGAGAGCTAGCTGAAGAGAAGGATTTAGCTTATTCCTGTCTCAATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006107 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016999 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019752 GO:0030060 GO:0034641 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0045333 GO:0046483 GO:0046496 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04964 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map04964

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

372

Amino Acids

40.78

Weight (kDa)

5.63

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ldh_1_N	PF00056	46 - 192	3.1e-30	lactate/malate dehydrogenase, NAD binding domain
Ldh_1_C	PF02866	196 - 365	7.1e-42	lactate/malate dehydrogenase, alpha/beta C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56720
fragaria_vesca	FvH4_3g14020 FvH4_3g14020 FvH4_3g14020
malus_domestica	MD05G1238800.v1.1 MD10G1216900.v1.1
prunus_persica	Prupe.4G127500_v2.0.a1 Prupe.4G127500_v2.0.a1
pyrus_communis	pycom05g21480 pycom10g18290
rosa_chinensis	RchiOBHm_Chr5g0023331
rosa_laevigata	RLG00000032714
rosa_multiflora	Rmu_sc0004693.1_g000004 Rmu_sc0009954.1_g000015
rosa_roxburghii	Rroxscaffold_1G00056000
rosa_rugosa	Rorug05G0078400 Rorug05G0078500
rosa_samantha	Rh5AG165000 Rh5BG164500 Rh5CG179400 Rh5DG166000
rosa_wichuraiana	Rw5G014870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	955
AccII	CGCG	2 cut(s)	329, 810
AciI	CCGC	3 cut(s)	384, 810, 855
AclWI	GGATC	1 cut(s)	122
AcuI	CTGAAG	2 cut(s)	797, 1101
AfaI	GTAC	1 cut(s)	1017
AflIII	ACRYGT	1 cut(s)	99
AgeI	ACCGGT	1 cut(s)	149
AgsI	TTSAA	4 cut(s)	261, 293, 347, 687
AhlI	ACTAGT	1 cut(s)	754
AjnI	CCWGG	1 cut(s)	961
Alw21I	GWGCWC	2 cut(s)	610, 832
Alw26I	GTCTC	3 cut(s)	724, 729, 1112
AlwI	GGATC	1 cut(s)	122
ApeKI	GCWGC	4 cut(s)	155, 815, 857, 866
AseI	ATTAAT	1 cut(s)	24
AsiGI	ACCGGT	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	553
AspS9I	GGNCC	1 cut(s)	212
AsuC2I	CCSGG	1 cut(s)	563
AsuNHI	GCTAGC	1 cut(s)	1075
AvaII	GGWCC	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	610
BarI	GAAGNNNNNNTAC	2 cut(s)	667, 699
BauI	CACGAG	1 cut(s)	1068
Bbv12I	GWGCWC	2 cut(s)	610, 832
BbvI	GCAGC	4 cut(s)	167, 827, 844, 878
BccI	CCATC	1 cut(s)	562
BceAI	ACGGC	1 cut(s)	958
BciT130I	CCWGG	1 cut(s)	963
BcnI	CCSGG	1 cut(s)	563
BcoDI	GTCTC	3 cut(s)	724, 729, 1112
BcuI	ACTAGT	1 cut(s)	754
BfaI	CTAG	5 cut(s)	209, 269, 611, 755, 1076
BisI	GCNGC	4 cut(s)	156, 816, 858, 867
BlpI	GCTNAGC	1 cut(s)	615
BlsI	GCNGC	4 cut(s)	157, 817, 859, 868
Bme1390I	CCNGG	2 cut(s)	563, 963
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	901
BmrFI	CCNGG	2 cut(s)	563, 963
BmsI	GCATC	1 cut(s)	488
BmtI	GCTAGC	1 cut(s)	1079
BpmI	CTGGAG	1 cut(s)	753
Bpu1102I	GCTNAGC	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	438
BpuMI	CCSGG	1 cut(s)	563
BsaBI	GATNNNNATC	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	392
BsaWI	WCCGGW	2 cut(s)	149, 982
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	2 cut(s)	736, 776
Bse8I	GATNNNNATC	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	963
BseDI	CCNNGG	1 cut(s)	392
BseGI	GGATG	1 cut(s)	1063
BseJI	GATNNNNATC	1 cut(s)	377
BseMII	CTCAG	2 cut(s)	629, 1039
BseNI	ACTGG	2 cut(s)	736, 776
BseXI	GCAGC	4 cut(s)	167, 827, 844, 878
BsgI	GTGCAG	4 cut(s)	174, 834, 885, 1050
Bsh1236I	CGCG	2 cut(s)	329, 810
BshTI	ACCGGT	1 cut(s)	149
BsiHKAI	GWGCWC	2 cut(s)	610, 832
BsiSI	CCGG	3 cut(s)	150, 563, 983
BsmAI	GTCTC	3 cut(s)	724, 729, 1112
Bsp1286I	GDGCHC	2 cut(s)	610, 832
Bsp143I	GATC	7 cut(s)	127, 217, 378, 534, 663, 763, 1011
Bsp1720I	GCTNAGC	1 cut(s)	615
Bsp68I	TCGCGA	1 cut(s)	329
BspACI	CCGC	3 cut(s)	384, 810, 855
BspCNI	CTCAG	2 cut(s)	628, 1038
BspFNI	CGCG	2 cut(s)	329, 810
BspLI	GGNNCC	1 cut(s)	901
BspOI	GCTAGC	1 cut(s)	1079
BspPI	GGATC	1 cut(s)	122
BsrFI	RCCGGY	1 cut(s)	149
BsrI	ACTGG	2 cut(s)	736, 776
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	392
BssMI	GATC	7 cut(s)	127, 217, 378, 534, 663, 763, 1011
BssNAI	GTATAC	1 cut(s)	956
BssSI	CACGAG	1 cut(s)	1068
BssT1I	CCWWGG	1 cut(s)	392
Bst1107I	GTATAC	1 cut(s)	956
Bst2BI	CACGAG	1 cut(s)	1068
Bst2UI	CCWGG	1 cut(s)	963
Bst4CI	ACNGT	4 cut(s)	63, 718, 744, 840
Bst6I	CTCTTC	2 cut(s)	315, 1077
BstAPI	GCANNNNNTGC	1 cut(s)	515
BstC8I	GCNNGC	4 cut(s)	255, 403, 621, 1077
BstDEI	CTNAG	3 cut(s)	615, 632, 1025
BstEII	GGTNACC	1 cut(s)	674
BstF5I	GGATG	1 cut(s)	1063
BstFNI	CGCG	2 cut(s)	329, 810
BstHHI	GCGC	1 cut(s)	553
BstKTI	GATC	7 cut(s)	130, 220, 381, 537, 666, 766, 1014
BstMAI	GTCTC	3 cut(s)	724, 729, 1112
BstMBI	GATC	7 cut(s)	127, 217, 378, 534, 663, 763, 1011
BstMWI	GCNNNNNNNGC	5 cut(s)	515, 620, 854, 863, 866
BstNI	CCWGG	1 cut(s)	963
BstNSI	RCATGY	2 cut(s)	103, 354
BstPI	GGTNACC	1 cut(s)	674
BstSCI	CCNGG	2 cut(s)	561, 961
BstUI	CGCG	2 cut(s)	329, 810
BstV1I	GCAGC	4 cut(s)	167, 827, 844, 878
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BstZ17I	GTATAC	1 cut(s)	956
BtsCI	GGATG	1 cut(s)	1063
BtsI	GCAGTG	1 cut(s)	655
BtsIMutI	CAGTG	1 cut(s)	655
BtuMI	TCGCGA	1 cut(s)	329
Cac8I	GCNNGC	4 cut(s)	255, 403, 621, 1077
CfoI	GCGC	1 cut(s)	553
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	212
CsiI	ACCWGGT	1 cut(s)	961
Csp6I	GTAC	1 cut(s)	1016
CspAI	ACCGGT	1 cut(s)	149
CspCI	CAANNNNNGTGG	2 cut(s)	948, 983
CviAII	CATG	5 cut(s)	81, 100, 226, 351, 406
CviQI	GTAC	1 cut(s)	1016
DdeI	CTNAG	3 cut(s)	615, 632, 1025
DpnI	GATC	7 cut(s)	129, 219, 380, 536, 665, 765, 1013
DpnII	GATC	7 cut(s)	127, 217, 378, 534, 663, 763, 1011
Eam1104I	CTCTTC	2 cut(s)	315, 1077
EarI	CTCTTC	2 cut(s)	315, 1077
EciI	GGCGGA	1 cut(s)	399
Ecl136II	GAGCTC	1 cut(s)	608
Eco130I	CCWWGG	1 cut(s)	392
Eco24I	GRGCYC	1 cut(s)	610
Eco47I	GGWCC	1 cut(s)	212
Eco53kI	GAGCTC	1 cut(s)	608
Eco57I	CTGAAG	2 cut(s)	797, 1101
Eco91I	GGTNACC	1 cut(s)	674
EcoICRI	GAGCTC	1 cut(s)	608
EcoO65I	GGTNACC	1 cut(s)	674
EcoRII	CCWGG	1 cut(s)	961
EcoT14I	CCWWGG	1 cut(s)	392
EcoT22I	ATGCAT	1 cut(s)	481
EcoT38I	GRGCYC	1 cut(s)	610
ErhI	CCWWGG	1 cut(s)	392
FaeI	CATG	5 cut(s)	84, 103, 229, 354, 409
FatI	CATG	5 cut(s)	80, 99, 225, 350, 405
FauNDI	CATATG	1 cut(s)	949
FblI	GTMKAC	1 cut(s)	955
Fnu4HI	GCNGC	4 cut(s)	156, 816, 858, 867
FokI	GGATG	1 cut(s)	1070
FriOI	GRGCYC	1 cut(s)	610
Fsp4HI	GCNGC	4 cut(s)	156, 816, 858, 867
FspBI	CTAG	5 cut(s)	209, 269, 611, 755, 1076
GlaI	GCGC	1 cut(s)	552
GluI	GCNGC	4 cut(s)	156, 816, 858, 867
GsuI	CTGGAG	1 cut(s)	753
HapII	CCGG	3 cut(s)	150, 563, 983
HhaI	GCGC	1 cut(s)	553
Hin1II	CATG	5 cut(s)	84, 103, 229, 354, 409
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HindIII	AAGCTT	1 cut(s)	456
HinfI	GANTC	7 cut(s)	40, 229, 296, 387, 591, 1023, 1061
HpaII	CCGG	3 cut(s)	150, 563, 983
Hpy166II	GTNNAC	3 cut(s)	266, 956, 973
Hpy188I	TCNGA	4 cut(s)	45, 484, 534, 940
Hpy188III	TCNNGA	5 cut(s)	215, 293, 328, 370, 698
Hpy8I	GTNNAC	3 cut(s)	266, 956, 973
HpyAV	CCTTC	1 cut(s)	1081
HpyCH4III	ACNGT	4 cut(s)	63, 718, 744, 840
HpyCH4IV	ACGT	1 cut(s)	660
HpyF10VI	GCNNNNNNNGC	5 cut(s)	515, 620, 854, 863, 866
HpyF3I	CTNAG	3 cut(s)	615, 632, 1025
HpySE526I	ACGT	1 cut(s)	660
Hsp92II	CATG	5 cut(s)	84, 103, 229, 354, 409
HspAI	GCGC	1 cut(s)	551
Kzo9I	GATC	7 cut(s)	127, 217, 378, 534, 663, 763, 1011
LmnI	GCTCC	2 cut(s)	187, 286
Lsp1109I	GCAGC	4 cut(s)	167, 827, 844, 878
LweI	GCATC	1 cut(s)	488
MabI	ACCWGGT	1 cut(s)	961
MaeI	CTAG	5 cut(s)	209, 269, 611, 755, 1076
MaeII	ACGT	1 cut(s)	660
MaeIII	GTNAC	3 cut(s)	674, 757, 872
MalI	GATC	7 cut(s)	129, 219, 380, 536, 665, 765, 1013
MboI	GATC	7 cut(s)	127, 217, 378, 534, 663, 763, 1011
MboII	GAAGA	7 cut(s)	29, 302, 578, 675, 790, 1021, 1094
MfeI	CAATTG	1 cut(s)	177
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	2 cut(s)	610, 832
MluCI	AATT	4 cut(s)	21, 25, 106, 177
MlyI	GAGTC	3 cut(s)	585, 1017, 1055
MmeI	TCCRAC	1 cut(s)	986
MnlI	CCTC	3 cut(s)	191, 318, 1038
Mph1103I	ATGCAT	1 cut(s)	481
MseI	TTAA	5 cut(s)	24, 113, 539, 746, 824
MslI	CAYNNNNRTG	1 cut(s)	882
MspA1I	CMGCKG	2 cut(s)	818, 857
MspI	CCGG	3 cut(s)	150, 563, 983
MspR9I	CCNGG	2 cut(s)	563, 963
MunI	CAATTG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	963
MvnI	CGCG	2 cut(s)	329, 810
MwoI	GCNNNNNNNGC	5 cut(s)	515, 620, 854, 863, 866
NciI	CCSGG	1 cut(s)	563
NdeI	CATATG	1 cut(s)	949
NdeII	GATC	7 cut(s)	127, 217, 378, 534, 663, 763, 1011
NheI	GCTAGC	1 cut(s)	1075
NlaIII	CATG	5 cut(s)	84, 103, 229, 354, 409
NlaIV	GGNNCC	1 cut(s)	901
NmuCI	GTSAC	2 cut(s)	757, 872
NruI	TCGCGA	1 cut(s)	329
NsiI	ATGCAT	1 cut(s)	481
NspI	RCATGY	2 cut(s)	103, 354
PciI	ACATGT	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	789
PfeI	GAWTC	4 cut(s)	40, 229, 296, 387
PfoI	TCCNGGA	1 cut(s)	561
PinAI	ACCGGT	1 cut(s)	149
PkrI	GCNGC	4 cut(s)	157, 817, 859, 868
PleI	GAGTC	3 cut(s)	585, 1017, 1055
PpsI	GAGTC	3 cut(s)	585, 1017, 1055
PscI	ACATGT	1 cut(s)	99
PshBI	ATTAAT	1 cut(s)	24
Psp124BI	GAGCTC	1 cut(s)	610
Psp6I	CCWGG	1 cut(s)	961
PspEI	GGTNACC	1 cut(s)	674
PspGI	CCWGG	1 cut(s)	961
PspN4I	GGNNCC	1 cut(s)	901
PspPI	GGNCC	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	127
PvuII	CAGCTG	1 cut(s)	818
RruI	TCGCGA	1 cut(s)	329
RsaI	GTAC	1 cut(s)	1017
RsaNI	GTAC	1 cut(s)	1016
RseI	CAYNNNNRTG	1 cut(s)	882
SacI	GAGCTC	1 cut(s)	610
SaqAI	TTAA	5 cut(s)	24, 113, 539, 746, 824
SatI	GCNGC	4 cut(s)	156, 816, 858, 867
Sau3AI	GATC	7 cut(s)	127, 217, 378, 534, 663, 763, 1011
Sau96I	GGNCC	1 cut(s)	212
SchI	GAGTC	3 cut(s)	585, 1017, 1055
ScrFI	CCNGG	2 cut(s)	563, 963
SduI	GDGCHC	2 cut(s)	610, 832
SexAI	ACCWGGT	1 cut(s)	961
SfaNI	GCATC	1 cut(s)	488
SinI	GGWCC	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	882
SmlI	CTYRAG	1 cut(s)	453
SmoI	CTYRAG	1 cut(s)	453
SpeI	ACTAGT	1 cut(s)	754
Sse9I	AATT	4 cut(s)	21, 25, 106, 177
SsiI	CCGC	3 cut(s)	384, 810, 855
SspMI	CTAG	5 cut(s)	209, 269, 611, 755, 1076
SstI	GAGCTC	1 cut(s)	610
StyD4I	CCNGG	2 cut(s)	561, 961
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	4 cut(s)	63, 718, 744, 840
TaiI	ACGT	1 cut(s)	663
TaqI	TCGA	5 cut(s)	428, 594, 604, 842, 1043
TasI	AATT	4 cut(s)	21, 25, 106, 177
TfiI	GAWTC	4 cut(s)	40, 229, 296, 387
Tru1I	TTAA	5 cut(s)	24, 113, 539, 746, 824
Tru9I	TTAA	5 cut(s)	24, 113, 539, 746, 824
TscAI	CASTG	1 cut(s)	655
TseFI	GTSAC	2 cut(s)	757, 872
TseI	GCWGC	4 cut(s)	155, 815, 857, 866
Tsp45I	GTSAC	2 cut(s)	757, 872
TspGWI	ACGGA	2 cut(s)	847, 872
TspRI	CASTG	1 cut(s)	655
VpaK11BI	GGWCC	1 cut(s)	212
VspI	ATTAAT	1 cut(s)	24
XceI	RCATGY	2 cut(s)	103, 354
XmiI	GTMKAC	1 cut(s)	955
XspI	CTAG	5 cut(s)	209, 269, 611, 755, 1076
Zsp2I	ATGCAT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.