Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009056

Physical Location & Seq

Genomic Coordinates Reverse (-)

8428090 .. 8431251

Gene Structure 3162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g14020.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGAGCATATTGAACTGGTTACAAAACTTTTGTTGGTTCTTTTCACTGTGGCTTTCTTTTGGAAGCTTATTACACACATGTGGAGCTTCTTGGATGTGGAGAAGGATCCTGTCATAGTATTGGTTACTGGGGCTGCAGGGCAAATAGGCTATGCTATTGTTCCAATGATTGCTAGGGGCGCCATGCTCGGTCCTGATCAGCCTGTAATTCTGCACATGCTTGATATTCCTCCTGCAGCTGAGTCCTTGGCTGGGGTGAAAATGGAATTGATCGATGCTGCCTTTCCTCTTCTCAAAGGTGTTGTGGCTACAACAGATGTTGAGGAAGCTTGTGAAGGTGTCAACATTGCAGTTATGGTTGGTGGATTCCCAAGGAAGGAAGGTATGGAAAGAAAGGATGTAATGTCAAAAAATGTGTCCATCTACAAGGCTCAAGCTTCAGCATTGGAGAAGTATGCTGCTGCAGATTGCAAGGTTCTGGTGGTTGCCAACCCAGCAAACACCAATGCACTCATCTTGAAAGAATTTGCCCCCAAAATCCCAGAGAAAAACATCACATGCATGACACGACTTGATCATAACCGAGCATTGGGGCAAATCTCTGAGAAGCTAAATGTTCATGTTGGTGATGTGAAGAATGTTATCATCTGGGGAAATCACTCTTCAACTCAGTATCCTGATGTCAATCATGCAACCGTTGGGGGCAAAACTGTCAGAGAAGCTGTGGGAGATGATCAATGGTTGAATACCAAGTTCATCACCATTGTTCAGCAGCGCGGTGCAGCCATTATTAAGGCTCGGAAACTATCAAGCGCTTTGTCTGCTGCGAATTCTGCCTGTGATCACATACGTGATTGGGTTGTTGGGACTCCTAAGGGGACACATGTTTCCATGGGTGTGTATTCTGATGGTTCTTATGGAATCCAGAAAGGCCTCATGTACTCTTTCCCTGTTACCTGTGAGAAAGGGGAATGGAAAATTGTGCAGGGACTCAAGATTGACGAGTTCTCGAGGACAAAGATGGATGCAACTGCACAAGAGCTCATTGAGGAGAAAGCGTTGGCCTATACATGTCTCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006107 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016999 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019752 GO:0030060 GO:0034641 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0045333 GO:0046483 GO:0046496 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04964 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map04964

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

361

Amino Acids

39.25

Weight (kDa)

6.51

Isoelectric Point (pI)

28.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ldh_1_N	PF00056	6 - 153	5.9e-31	lactate/malate dehydrogenase, NAD binding domain
Ldh_1_C	PF02866	157 - 297	1e-37	lactate/malate dehydrogenase, alpha/beta C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56720
fragaria_vesca	FvH4_3g14020 FvH4_3g14020 FvH4_3g14020
malus_domestica	MD05G1238800.v1.1 MD10G1216900.v1.1
prunus_persica	Prupe.4G127500_v2.0.a1 Prupe.4G127500_v2.0.a1
pyrus_communis	pycom05g21480 pycom10g18290
rosa_chinensis	RchiOBHm_Chr5g0023331
rosa_laevigata	RLG00000032714
rosa_multiflora	Rmu_sc0004693.1_g000004 Rmu_sc0009954.1_g000015
rosa_roxburghii	Rroxscaffold_1G00056000
rosa_rugosa	Rorug05G0078400 Rorug05G0078500
rosa_samantha	Rh5AG165000 Rh5BG164500 Rh5CG179400 Rh5DG166000
rosa_wichuraiana	Rw5G014870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AccII	CGCG	1 cut(s)	777
AciI	CCGC	1 cut(s)	777
AclWI	GGATC	2 cut(s)	101, 114
AcsI	RAATTY	2 cut(s)	524, 829
AcuI	CTGAAG	1 cut(s)	423
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	1 cut(s)	941
AfeI	AGCGCT	1 cut(s)	814
AfiI	CCNNNNNNNGG	3 cut(s)	252, 376, 589
AflIII	ACRYGT	3 cut(s)	78, 883, 1070
AgsI	TTSAA	4 cut(s)	14, 520, 666, 745
AleI	CACNNNNGTG	2 cut(s)	79, 849
AluBI	AGCT	8 cut(s)	67, 87, 239, 329, 437, 610, 722, 1042
AluI	AGCT	8 cut(s)	67, 87, 239, 329, 437, 610, 722, 1042
Alw21I	GWGCWC	1 cut(s)	1044
Alw26I	GTCTC	1 cut(s)	1079
AlwI	GGATC	2 cut(s)	101, 114
Ama87I	CYCGRG	1 cut(s)	1009
Aor51HI	AGCGCT	1 cut(s)	814
AoxI	GGCC	2 cut(s)	931, 1062
ApeKI	GCWGC	8 cut(s)	134, 236, 278, 458, 461, 772, 782, 824
ApoI	RAATTY	2 cut(s)	524, 829
ArsI	GACNNNNNNTTYG	2 cut(s)	401, 433
AspLEI	GCGC	3 cut(s)	182, 777, 815
AspS9I	GGNCC	1 cut(s)	191
AsuHPI	GGTGA	3 cut(s)	268, 638, 751
AvaI	CYCGRG	1 cut(s)	1009
AvaII	GGWCC	1 cut(s)	191
AxyI	CCTNAGG	1 cut(s)	873
BamHI	GGATCC	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	1044
Bbv12I	GWGCWC	1 cut(s)	1044
BbvI	GCAGC	8 cut(s)	121, 248, 265, 445, 448, 784, 794, 811
BccI	CCATC	3 cut(s)	428, 902, 1015
BciVI	GTATCC	1 cut(s)	684
BclI	TGATCA	4 cut(s)	196, 574, 733, 841
BcoDI	GTCTC	1 cut(s)	1079
BfaI	CTAG	1 cut(s)	174
BfmI	CTRYAG	3 cut(s)	135, 234, 462
BfoI	RGCGCY	2 cut(s)	183, 816
BfuI	GTATCC	1 cut(s)	684
BisI	GCNGC	8 cut(s)	135, 237, 279, 459, 462, 773, 783, 825
BlsI	GCNGC	8 cut(s)	136, 238, 280, 460, 463, 774, 784, 826
Bme18I	GGWCC	1 cut(s)	191
BmeT110I	CYCGRG	1 cut(s)	1009
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	2 cut(s)	108, 181
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	2 cut(s)	265, 1015
BmuI	ACTGGG	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	1061
BpuEI	CTTGAG	2 cut(s)	417, 977
Bsa29I	ATCGAT	1 cut(s)	273
BsaAI	YACGTR	1 cut(s)	851
BsaBI	GATNNNNATC	1 cut(s)	684
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	3 cut(s)	246, 371, 891
BsaXI	ACNNNNNCTCC	2 cut(s)	1043, 1073
Bsc4I	CCNNNNNNNGG	3 cut(s)	252, 376, 589
Bse1I	ACTGG	3 cut(s)	21, 133, 1078
Bse21I	CCTNAGG	1 cut(s)	873
Bse3DI	GCAATG	1 cut(s)	345
Bse8I	GATNNNNATC	1 cut(s)	684
BseCI	ATCGAT	1 cut(s)	273
BseDI	CCNNGG	3 cut(s)	246, 371, 891
BseGI	GGATG	3 cut(s)	100, 403, 1030
BseJI	GATNNNNATC	1 cut(s)	684
BseLI	CCNNNNNNNGG	3 cut(s)	252, 376, 589
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	3 cut(s)	231, 594, 683
BseNI	ACTGG	3 cut(s)	21, 133, 1078
BseRI	GAGGAG	1 cut(s)	1064
BseXI	GCAGC	8 cut(s)	121, 248, 265, 445, 448, 784, 794, 811
BseYI	CCCAGC	2 cut(s)	251, 493
BsgI	GTGCAG	4 cut(s)	197, 801, 1004, 1017
Bsh1236I	CGCG	1 cut(s)	777
BshFI	GGCC	2 cut(s)	933, 1064
BshNI	GGYRCC	1 cut(s)	179
BshVI	ATCGAT	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	1044
BsiHKCI	CYCGRG	1 cut(s)	1009
BslFI	GGGAC	3 cut(s)	880, 892, 1002
BslI	CCNNNNNNNGG	3 cut(s)	252, 376, 589
BsmAI	GTCTC	1 cut(s)	1079
BsmFI	GGGAC	3 cut(s)	880, 892, 1002
BsnI	GGCC	2 cut(s)	933, 1064
BsoBI	CYCGRG	1 cut(s)	1009
Bsp1286I	GDGCHC	1 cut(s)	1044
Bsp143I	GATC	6 cut(s)	106, 196, 270, 574, 733, 841
Bsp19I	CCATGG	1 cut(s)	891
BspACI	CCGC	1 cut(s)	777
BspANI	GGCC	2 cut(s)	933, 1064
BspCNI	CTCAG	3 cut(s)	232, 595, 682
BspDI	ATCGAT	1 cut(s)	273
BspFNI	CGCG	1 cut(s)	777
BspLI	GGNNCC	2 cut(s)	108, 181
BspMAI	CTGCAG	3 cut(s)	139, 238, 466
BspPI	GGATC	2 cut(s)	101, 114
BspT107I	GGYRCC	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	345
BsrI	ACTGG	3 cut(s)	21, 133, 1078
BssECI	CCNNGG	3 cut(s)	246, 371, 891
BssMI	GATC	6 cut(s)	106, 196, 270, 574, 733, 841
BssNI	GRCGYC	1 cut(s)	180
BssT1I	CCWWGG	3 cut(s)	246, 371, 891
Bst4CI	ACNGT	3 cut(s)	49, 697, 712
Bst6I	CTCTTC	2 cut(s)	294, 667
BstACI	GRCGYC	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	851
BstDEI	CTNAG	4 cut(s)	240, 603, 669, 873
BstDSI	CCRYGG	1 cut(s)	891
BstF5I	GGATG	3 cut(s)	100, 403, 1030
BstFNI	CGCG	1 cut(s)	777
BstH2I	RGCGCY	2 cut(s)	183, 816
BstHHI	GCGC	3 cut(s)	182, 777, 815
BstKTI	GATC	6 cut(s)	109, 199, 273, 577, 736, 844
BstMAI	GTCTC	1 cut(s)	1079
BstMBI	GATC	6 cut(s)	106, 196, 270, 574, 733, 841
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 494, 821, 833
BstNSI	RCATGY	5 cut(s)	82, 220, 561, 887, 1074
BstSFI	CTRYAG	3 cut(s)	135, 234, 462
BstUI	CGCG	1 cut(s)	777
BstV1I	GCAGC	8 cut(s)	121, 248, 265, 445, 448, 784, 794, 811
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
Bsu15I	ATCGAT	1 cut(s)	273
Bsu36I	CCTNAGG	1 cut(s)	873
BsuI	GTATCC	1 cut(s)	684
BsuRI	GGCC	2 cut(s)	933, 1064
BsuTUI	ATCGAT	1 cut(s)	273
BtgI	CCRYGG	1 cut(s)	891
BtsCI	GGATG	3 cut(s)	100, 403, 1030
BtsIMutI	CAGTG	1 cut(s)	45
CfoI	GCGC	3 cut(s)	182, 777, 815
Cfr13I	GGNCC	1 cut(s)	191
ClaI	ATCGAT	1 cut(s)	273
Csp6I	GTAC	1 cut(s)	940
CviQI	GTAC	1 cut(s)	940
DdeI	CTNAG	4 cut(s)	240, 603, 669, 873
DinI	GGCGCC	1 cut(s)	181
DpnI	GATC	6 cut(s)	108, 198, 272, 576, 735, 843
DpnII	GATC	6 cut(s)	106, 196, 270, 574, 733, 841
Eam1104I	CTCTTC	2 cut(s)	294, 667
EarI	CTCTTC	2 cut(s)	294, 667
Ecl136II	GAGCTC	1 cut(s)	1042
Eco130I	CCWWGG	3 cut(s)	246, 371, 891
Eco147I	AGGCCT	1 cut(s)	933
Eco24I	GRGCYC	1 cut(s)	1044
Eco47I	GGWCC	1 cut(s)	191
Eco47III	AGCGCT	1 cut(s)	814
Eco53kI	GAGCTC	1 cut(s)	1042
Eco57I	CTGAAG	1 cut(s)	423
Eco81I	CCTNAGG	1 cut(s)	873
Eco88I	CYCGRG	1 cut(s)	1009
EcoICRI	GAGCTC	1 cut(s)	1042
EcoRI	GAATTC	1 cut(s)	829
EcoT14I	CCWWGG	3 cut(s)	246, 371, 891
EcoT22I	ATGCAT	1 cut(s)	563
EcoT38I	GRGCYC	1 cut(s)	1044
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
ErhI	CCWWGG	3 cut(s)	246, 371, 891
FaqI	GGGAC	3 cut(s)	880, 892, 1002
FbaI	TGATCA	4 cut(s)	196, 574, 733, 841
Fnu4HI	GCNGC	8 cut(s)	135, 237, 279, 459, 462, 773, 783, 825
FokI	GGATG	3 cut(s)	107, 410, 1037
FriOI	GRGCYC	1 cut(s)	1044
Fsp4HI	GCNGC	8 cut(s)	135, 237, 279, 459, 462, 773, 783, 825
FspBI	CTAG	1 cut(s)	174
GlaI	GCGC	3 cut(s)	181, 776, 814
GluI	GCNGC	8 cut(s)	135, 237, 279, 459, 462, 773, 783, 825
GsaI	CCCAGC	2 cut(s)	255, 497
GsuI	CTGGAG	1 cut(s)	1061
HaeII	RGCGCY	2 cut(s)	183, 816
HaeIII	GGCC	2 cut(s)	933, 1064
HhaI	GCGC	3 cut(s)	182, 777, 815
Hin1I	GRCGYC	1 cut(s)	180
Hin6I	GCGC	3 cut(s)	180, 775, 813
HinP1I	GCGC	3 cut(s)	180, 775, 813
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HindIII	AAGCTT	3 cut(s)	65, 327, 435
HinfI	GANTC	5 cut(s)	242, 366, 868, 921, 990
HphI	GGTGA	3 cut(s)	268, 638, 751
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	4 cut(s)	604, 716, 801, 907
Hpy188III	TCNNGA	6 cut(s)	194, 517, 677, 925, 994, 1009
Hpy8I	GTNNAC	1 cut(s)	343
HpyAV	CCTTC	4 cut(s)	97, 329, 370, 374
HpyCH4III	ACNGT	3 cut(s)	49, 697, 712
HpyCH4IV	ACGT	1 cut(s)	850
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 494, 821, 833
HpyF3I	CTNAG	4 cut(s)	240, 603, 669, 873
HpySE526I	ACGT	1 cut(s)	850
Hsp92I	GRCGYC	1 cut(s)	180
HspAI	GCGC	3 cut(s)	180, 775, 813
KasI	GGCGCC	1 cut(s)	179
Ksp22I	TGATCA	4 cut(s)	196, 574, 733, 841
Kzo9I	GATC	6 cut(s)	106, 196, 270, 574, 733, 841
LmnI	GCTCC	2 cut(s)	4, 84
Lsp1109I	GCAGC	8 cut(s)	121, 248, 265, 445, 448, 784, 794, 811
LweI	GCATC	2 cut(s)	265, 1015
MaeI	CTAG	1 cut(s)	174
MaeII	ACGT	1 cut(s)	850
MaeIII	GTNAC	3 cut(s)	19, 124, 952
MalI	GATC	6 cut(s)	108, 198, 272, 576, 735, 843
MboI	GATC	6 cut(s)	106, 196, 270, 574, 733, 841
MboII	GAAGA	3 cut(s)	281, 646, 654
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	1044
MluCI	AATT	5 cut(s)	207, 266, 524, 829, 978
Mly113I	GGCGCC	1 cut(s)	180
MlyI	GAGTC	3 cut(s)	251, 862, 984
MnlI	CCTC	6 cut(s)	240, 297, 316, 944, 1005, 1042
Mph1103I	ATGCAT	1 cut(s)	563
MseI	TTAA	1 cut(s)	792
MslI	CAYNNNNRTG	5 cut(s)	79, 560, 624, 849, 896
MspA1I	CMGCKG	1 cut(s)	239
MvnI	CGCG	1 cut(s)	777
MwoI	GCNNNNNNNGC	4 cut(s)	179, 494, 821, 833
NarI	GGCGCC	1 cut(s)	180
NcoI	CCATGG	1 cut(s)	891
NdeII	GATC	6 cut(s)	106, 196, 270, 574, 733, 841
NlaIV	GGNNCC	2 cut(s)	108, 181
NsiI	ATGCAT	1 cut(s)	563
NspI	RCATGY	5 cut(s)	82, 220, 561, 887, 1074
OliI	CACNNNNGTG	2 cut(s)	79, 849
PaeR7I	CTCGAG	1 cut(s)	1009
PceI	AGGCCT	1 cut(s)	933
PciI	ACATGT	3 cut(s)	78, 883, 1070
PfeI	GAWTC	2 cut(s)	366, 921
PkrI	GCNGC	8 cut(s)	136, 238, 280, 460, 463, 774, 784, 826
PleI	GAGTC	3 cut(s)	250, 862, 984
PluTI	GGCGCC	1 cut(s)	183
PpsI	GAGTC	3 cut(s)	250, 862, 984
Ppu21I	YACGTR	1 cut(s)	851
PscI	ACATGT	3 cut(s)	78, 883, 1070
Psp124BI	GAGCTC	1 cut(s)	1044
PspFI	CCCAGC	2 cut(s)	251, 493
PspN4I	GGNNCC	2 cut(s)	108, 181
PspPI	GGNCC	1 cut(s)	191
PstI	CTGCAG	3 cut(s)	139, 238, 466
PsuI	RGATCY	1 cut(s)	106
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	941
RsaNI	GTAC	1 cut(s)	940
RseI	CAYNNNNRTG	5 cut(s)	79, 560, 624, 849, 896
SacI	GAGCTC	1 cut(s)	1044
SaqAI	TTAA	1 cut(s)	792
SatI	GCNGC	8 cut(s)	135, 237, 279, 459, 462, 773, 783, 825
Sau3AI	GATC	6 cut(s)	106, 196, 270, 574, 733, 841
Sau96I	GGNCC	1 cut(s)	191
SchI	GAGTC	3 cut(s)	251, 862, 984
SduI	GDGCHC	1 cut(s)	1044
SfaNI	GCATC	2 cut(s)	265, 1015
SfcI	CTRYAG	3 cut(s)	135, 234, 462
SfoI	GGCGCC	1 cut(s)	181
Sfr274I	CTCGAG	1 cut(s)	1009
SinI	GGWCC	1 cut(s)	191
SlaI	CTCGAG	1 cut(s)	1009
SmiMI	CAYNNNNRTG	5 cut(s)	79, 560, 624, 849, 896
SmlI	CTYRAG	3 cut(s)	432, 992, 1009
SmoI	CTYRAG	3 cut(s)	432, 992, 1009
Sse9I	AATT	5 cut(s)	207, 266, 524, 829, 978
SseBI	AGGCCT	1 cut(s)	933
SsiI	CCGC	1 cut(s)	777
SspDI	GGCGCC	1 cut(s)	179
SspMI	CTAG	1 cut(s)	174
SstI	GAGCTC	1 cut(s)	1044
StuI	AGGCCT	1 cut(s)	933
StyI	CCWWGG	3 cut(s)	246, 371, 891
TaaI	ACNGT	3 cut(s)	49, 697, 712
TaiI	ACGT	1 cut(s)	853
TaqI	TCGA	2 cut(s)	273, 1010
TaqII	GACCGA	1 cut(s)	179
TasI	AATT	5 cut(s)	207, 266, 524, 829, 978
TatI	WGTACW	1 cut(s)	939
TfiI	GAWTC	2 cut(s)	366, 921
Tru1I	TTAA	1 cut(s)	792
Tru9I	TTAA	1 cut(s)	792
TscAI	CASTG	1 cut(s)	52
TseI	GCWGC	8 cut(s)	134, 236, 278, 458, 461, 772, 782, 824
TspDTI	ATGAA	2 cut(s)	608, 745
TspRI	CASTG	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	2 cut(s)	524, 829
XceI	RCATGY	5 cut(s)	82, 220, 561, 887, 1074
XhoI	CTCGAG	1 cut(s)	1009
XspI	CTAG	1 cut(s)	174
Zsp2I	ATGCAT	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.