Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009056

Physical Location & Seq

Genomic Coordinates Forward (+)

24113190 .. 24116006

Gene Structure 2817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g21480.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCAAAAAACCCAGTTCGAGTTCTTGTCACTGGTGCCGCTGGGCAAATAGGGTATGCTATTGTTCCGATGATTGCAAGGGGGGCCATGCTAGGCCCTGACCAACCTGTAATTCTGCACATGCTTGATATTGAACCAGCAGCTGAAGCCTTGAATGGGGTGAAAATGGAACTAATTGATGCTGCCTTTCCTCTTCTCAAAGGTGTTGTTGCTACAACAGATGCTCAGGAAGCTTGTAAAGATGTCAATATTGCTGTTATGGTCGGCGGATTCCCACGGAAGGAAGGTATGGAAAGGAAGGATGTGATGTCGAAAAATGTATCAATCTACAAGGCTCAAGCTTCAGCACTAGAAAAGCATGCTGCTTCAGATGTCAAGGTTCTGGTGGTTGCGAACCCAGCAAACACTAATGCACTCATCTTGAAAGAATATGCACCTAAAATCCCAGAGAAGAACATCACATGTCTTACAAGACTAGATCATAACAGAGCTTTGGGACAAATCTCCGAGAAGCTAAATGTTCATGTTGGTGATGTAAAGAATGTTATCATCTGGGGAAATCACTCTTCAACTCAGTATCCTGATGTCAATCATGCAACTGTCACCACTAGCAGCGGAGAGAAACCTGTCAGGGAACTTGTGGCTAATGATCAATGGTTAAATACCGAGTTCATCACCACTGTGCAGCAGCGCGGTGCAGCCATTATTAAGGCTCGGAAGCTATCCAGTGCATTGTCTGCTGCCAGTTCTGCTTGTGATCACATACGTGATTGGGTTCTTGGGACTCCTAAGCAAGGCCTAATCTACTCCTTCCCTGTTACATGTGATAAAGGACAATGGTCAATTGTGCAGGGACTCAAGATTGACGATTTCTCAAGGGGAAAGCTAGATGCAACTGCAAAAGAGCTCATCGAGGAGAAAACATTGGCCTATTCATGTCTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006107 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016999 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019752 GO:0030060 GO:0034641 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0045333 GO:0046483 GO:0046496 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04964 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map04964

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

316

Amino Acids

34.02

Weight (kDa)

8.18

Isoelectric Point (pI)

33.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56720
fragaria_vesca	FvH4_3g14020 FvH4_3g14020 FvH4_3g14020
malus_domestica	MD05G1238800.v1.1 MD10G1216900.v1.1
prunus_persica	Prupe.4G127500_v2.0.a1 Prupe.4G127500_v2.0.a1
pyrus_communis	pycom05g21480 pycom10g18290
rosa_chinensis	RchiOBHm_Chr5g0023331
rosa_laevigata	RLG00000032714
rosa_multiflora	Rmu_sc0004693.1_g000004 Rmu_sc0009954.1_g000015
rosa_roxburghii	Rroxscaffold_1G00056000
rosa_rugosa	Rorug05G0078400 Rorug05G0078500
rosa_samantha	Rh5AG165000 Rh5BG164500 Rh5CG179400 Rh5DG166000
rosa_wichuraiana	Rw5G014870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	35
AccII	CGCG	1 cut(s)	693
AciI	CCGC	4 cut(s)	39, 267, 615, 693
AcuI	CTGAAG	3 cut(s)	165, 327, 351
AfiI	CCNNNNNNNGG	3 cut(s)	156, 280, 794
AflIII	ACRYGT	2 cut(s)	461, 821
AgsI	TTSAA	4 cut(s)	134, 154, 424, 570
AjuI	GAANNNNNNNTTGG	2 cut(s)	96, 128
AleI	CACNNNNGTG	2 cut(s)	680, 765
AluBI	AGCT	8 cut(s)	143, 233, 341, 491, 514, 721, 886, 907
AluI	AGCT	8 cut(s)	143, 233, 341, 491, 514, 721, 886, 907
Alw21I	GWGCWC	1 cut(s)	909
Alw26I	GTCTC	1 cut(s)	944
AlwNI	CAGNNNCTG	1 cut(s)	143
AoxI	GGCC	4 cut(s)	84, 94, 796, 927
ApeKI	GCWGC	8 cut(s)	140, 182, 362, 612, 685, 688, 698, 740
AspLEI	GCGC	1 cut(s)	693
AspS9I	GGNCC	2 cut(s)	84, 95
AsuHPI	GGTGA	4 cut(s)	172, 542, 595, 667
BanI	GGYRCC	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	909
Bbv12I	GWGCWC	1 cut(s)	909
BbvI	GCAGC	8 cut(s)	152, 169, 349, 624, 697, 700, 710, 727
BciVI	GTATCC	1 cut(s)	588
BclI	TGATCA	2 cut(s)	649, 757
BcoDI	GTCTC	1 cut(s)	944
BfaI	CTAG	5 cut(s)	92, 350, 476, 609, 887
BfuI	GTATCC	1 cut(s)	588
BisI	GCNGC	9 cut(s)	39, 141, 183, 363, 613, 686, 689, 699, 741
BlsI	GCNGC	9 cut(s)	40, 142, 184, 364, 614, 687, 690, 700, 742
BmgT120I	GGNCC	2 cut(s)	84, 95
BmiI	GGNNCC	2 cut(s)	37, 85
BmrI	ACTGGG	1 cut(s)	8
BmsI	GCATC	3 cut(s)	169, 211, 880
BmuI	ACTGGG	1 cut(s)	8
BoxI	GACNNNNGTC	1 cut(s)	838
Bpu10I	CCTNAGC	2 cut(s)	225, 789
BpuEI	CTTGAG	3 cut(s)	321, 842, 859
BsaAI	YACGTR	1 cut(s)	767
BsaBI	GATNNNNATC	1 cut(s)	588
BsaJI	CCNNGG	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	3 cut(s)	156, 280, 794
Bse1I	ACTGG	4 cut(s)	14, 37, 726, 744
Bse8I	GATNNNNATC	1 cut(s)	588
BseDI	CCNNGG	1 cut(s)	275
BseGI	GGATG	1 cut(s)	307
BseJI	GATNNNNATC	1 cut(s)	588
BseLI	CCNNNNNNNGG	3 cut(s)	156, 280, 794
BseMII	CTCAG	2 cut(s)	239, 587
BseNI	ACTGG	4 cut(s)	14, 37, 726, 744
BseRI	GAGGAG	1 cut(s)	929
BseXI	GCAGC	8 cut(s)	152, 169, 349, 624, 697, 700, 710, 727
BseYI	CCCAGC	2 cut(s)	41, 397
BsgI	GTGCAG	4 cut(s)	101, 704, 717, 869
Bsh1236I	CGCG	1 cut(s)	693
BshFI	GGCC	4 cut(s)	86, 96, 798, 929
BshNI	GGYRCC	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	909
BslFI	GGGAC	3 cut(s)	510, 796, 867
BslI	CCNNNNNNNGG	3 cut(s)	156, 280, 794
BsmAI	GTCTC	1 cut(s)	944
BsmFI	GGGAC	3 cut(s)	510, 796, 867
BsnI	GGCC	4 cut(s)	86, 96, 798, 929
Bsp1286I	GDGCHC	1 cut(s)	909
Bsp143I	GATC	3 cut(s)	478, 649, 757
BspACI	CCGC	4 cut(s)	39, 267, 615, 693
BspANI	GGCC	4 cut(s)	86, 96, 798, 929
BspCNI	CTCAG	2 cut(s)	238, 586
BspFNI	CGCG	1 cut(s)	693
BspLI	GGNNCC	2 cut(s)	37, 85
BspT107I	GGYRCC	1 cut(s)	35
BsrI	ACTGG	4 cut(s)	14, 37, 726, 744
BssECI	CCNNGG	1 cut(s)	275
BssMI	GATC	3 cut(s)	478, 649, 757
Bst4CI	ACNGT	2 cut(s)	601, 682
Bst6I	CTCTTC	2 cut(s)	198, 571
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstBAI	YACGTR	1 cut(s)	767
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	3 cut(s)	225, 573, 789
BstDSI	CCRYGG	1 cut(s)	275
BstENI	CCTNNNNNAGG	1 cut(s)	792
BstF5I	GGATG	1 cut(s)	307
BstFNI	CGCG	1 cut(s)	693
BstHHI	GCGC	1 cut(s)	693
BstKTI	GATC	3 cut(s)	481, 652, 760
BstMAI	GTCTC	1 cut(s)	944
BstMBI	GATC	3 cut(s)	478, 649, 757
BstMWI	GCNNNNNNNGC	6 cut(s)	83, 146, 230, 398, 737, 749
BstNSI	RCATGY	4 cut(s)	124, 362, 465, 825
BstPAI	GACNNNNGTC	1 cut(s)	838
BstUI	CGCG	1 cut(s)	693
BstV1I	GCAGC	8 cut(s)	152, 169, 349, 624, 697, 700, 710, 727
BsuI	GTATCC	1 cut(s)	588
BsuRI	GGCC	4 cut(s)	86, 96, 798, 929
BtgI	CCRYGG	1 cut(s)	275
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	3 cut(s)	30, 678, 733
Cac8I	GCNNGC	1 cut(s)	360
CaiI	CAGNNNCTG	1 cut(s)	143
CfoI	GCGC	1 cut(s)	693
Cfr13I	GGNCC	2 cut(s)	84, 95
CviAII	CATG	8 cut(s)	88, 121, 359, 462, 524, 593, 822, 936
DdeI	CTNAG	3 cut(s)	225, 573, 789
DpnI	GATC	3 cut(s)	480, 651, 759
DpnII	GATC	3 cut(s)	478, 649, 757
Eam1104I	CTCTTC	2 cut(s)	198, 571
EarI	CTCTTC	2 cut(s)	198, 571
EciI	GGCGGA	1 cut(s)	282
Ecl136II	GAGCTC	1 cut(s)	907
Eco147I	AGGCCT	1 cut(s)	798
Eco24I	GRGCYC	1 cut(s)	909
Eco53kI	GAGCTC	1 cut(s)	907
Eco57I	CTGAAG	3 cut(s)	165, 327, 351
EcoICRI	GAGCTC	1 cut(s)	907
EcoNI	CCTNNNNNAGG	1 cut(s)	792
EcoO109I	RGGNCCY	1 cut(s)	95
EcoT38I	GRGCYC	1 cut(s)	909
FaeI	CATG	8 cut(s)	91, 124, 362, 465, 527, 596, 825, 939
FaqI	GGGAC	3 cut(s)	510, 796, 867
FatI	CATG	8 cut(s)	87, 120, 358, 461, 523, 592, 821, 935
FbaI	TGATCA	2 cut(s)	649, 757
Fnu4HI	GCNGC	9 cut(s)	39, 141, 183, 363, 613, 686, 689, 699, 741
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	1 cut(s)	909
Fsp4HI	GCNGC	9 cut(s)	39, 141, 183, 363, 613, 686, 689, 699, 741
FspBI	CTAG	5 cut(s)	92, 350, 476, 609, 887
GlaI	GCGC	1 cut(s)	692
GluI	GCNGC	9 cut(s)	39, 141, 183, 363, 613, 686, 689, 699, 741
GsaI	CCCAGC	2 cut(s)	45, 401
HaeIII	GGCC	4 cut(s)	86, 96, 798, 929
HhaI	GCGC	1 cut(s)	693
Hin1II	CATG	8 cut(s)	91, 124, 362, 465, 527, 596, 825, 939
Hin6I	GCGC	1 cut(s)	691
HinP1I	GCGC	1 cut(s)	691
HindIII	AAGCTT	2 cut(s)	231, 339
HinfI	GANTC	3 cut(s)	270, 784, 855
HphI	GGTGA	4 cut(s)	172, 542, 595, 667
Hpy188I	TCNGA	4 cut(s)	69, 370, 508, 717
Hpy188III	TCNNGA	4 cut(s)	227, 421, 581, 859
HpyAV	CCTTC	4 cut(s)	274, 278, 292, 820
HpyCH4III	ACNGT	2 cut(s)	601, 682
HpyCH4IV	ACGT	1 cut(s)	766
HpyF10VI	GCNNNNNNNGC	6 cut(s)	83, 146, 230, 398, 737, 749
HpyF3I	CTNAG	3 cut(s)	225, 573, 789
HpySE526I	ACGT	1 cut(s)	766
Hsp92II	CATG	8 cut(s)	91, 124, 362, 465, 527, 596, 825, 939
HspAI	GCGC	1 cut(s)	691
Ksp22I	TGATCA	2 cut(s)	649, 757
Kzo9I	GATC	3 cut(s)	478, 649, 757
Lsp1109I	GCAGC	8 cut(s)	152, 169, 349, 624, 697, 700, 710, 727
LweI	GCATC	3 cut(s)	169, 211, 880
MaeI	CTAG	5 cut(s)	92, 350, 476, 609, 887
MaeII	ACGT	1 cut(s)	766
MaeIII	GTNAC	3 cut(s)	28, 601, 817
MalI	GATC	3 cut(s)	480, 651, 759
MboI	GATC	3 cut(s)	478, 649, 757
MboII	GAAGA	3 cut(s)	185, 463, 558
MfeI	CAATTG	1 cut(s)	843
MhlI	GDGCHC	1 cut(s)	909
MluCI	AATT	4 cut(s)	111, 174, 843, 943
MlyI	GAGTC	2 cut(s)	778, 849
MnlI	CCTC	2 cut(s)	201, 907
MseI	TTAA	3 cut(s)	659, 708, 946
MslI	CAYNNNNRTG	3 cut(s)	528, 680, 765
MspA1I	CMGCKG	3 cut(s)	41, 143, 615
MunI	CAATTG	1 cut(s)	843
MvnI	CGCG	1 cut(s)	693
MwoI	GCNNNNNNNGC	6 cut(s)	83, 146, 230, 398, 737, 749
NdeII	GATC	3 cut(s)	478, 649, 757
NlaIII	CATG	8 cut(s)	91, 124, 362, 465, 527, 596, 825, 939
NlaIV	GGNNCC	2 cut(s)	37, 85
NmuCI	GTSAC	2 cut(s)	28, 601
NspI	RCATGY	4 cut(s)	124, 362, 465, 825
OliI	CACNNNNGTG	2 cut(s)	680, 765
PaeI	GCATGC	1 cut(s)	362
PceI	AGGCCT	1 cut(s)	798
PciI	ACATGT	2 cut(s)	461, 821
PfeI	GAWTC	1 cut(s)	270
PkrI	GCNGC	9 cut(s)	40, 142, 184, 364, 614, 687, 690, 700, 742
PleI	GAGTC	2 cut(s)	778, 849
PpsI	GAGTC	2 cut(s)	778, 849
Ppu21I	YACGTR	1 cut(s)	767
PscI	ACATGT	2 cut(s)	461, 821
PshAI	GACNNNNGTC	1 cut(s)	838
Psp124BI	GAGCTC	1 cut(s)	909
PspFI	CCCAGC	2 cut(s)	41, 397
PspN4I	GGNNCC	2 cut(s)	37, 85
PspPI	GGNCC	2 cut(s)	84, 95
PstNI	CAGNNNCTG	1 cut(s)	143
PvuII	CAGCTG	1 cut(s)	143
RseI	CAYNNNNRTG	3 cut(s)	528, 680, 765
SacI	GAGCTC	1 cut(s)	909
SaqAI	TTAA	3 cut(s)	659, 708, 946
SatI	GCNGC	9 cut(s)	39, 141, 183, 363, 613, 686, 689, 699, 741
Sau3AI	GATC	3 cut(s)	478, 649, 757
Sau96I	GGNCC	2 cut(s)	84, 95
SchI	GAGTC	2 cut(s)	778, 849
SduI	GDGCHC	1 cut(s)	909
SfaNI	GCATC	3 cut(s)	169, 211, 880
SmiMI	CAYNNNNRTG	3 cut(s)	528, 680, 765
SmlI	CTYRAG	3 cut(s)	336, 857, 874
SmoI	CTYRAG	3 cut(s)	336, 857, 874
SphI	GCATGC	1 cut(s)	362
Sse9I	AATT	4 cut(s)	111, 174, 843, 943
SseBI	AGGCCT	1 cut(s)	798
SsiI	CCGC	4 cut(s)	39, 267, 615, 693
SspI	AATATT	1 cut(s)	250
SspMI	CTAG	5 cut(s)	92, 350, 476, 609, 887
SstI	GAGCTC	1 cut(s)	909
StuI	AGGCCT	1 cut(s)	798
TaaI	ACNGT	2 cut(s)	601, 682
TaiI	ACGT	1 cut(s)	769
TaqI	TCGA	3 cut(s)	19, 311, 912
TasI	AATT	4 cut(s)	111, 174, 843, 943
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	3 cut(s)	659, 708, 946
Tru9I	TTAA	3 cut(s)	659, 708, 946
TscAI	CASTG	3 cut(s)	37, 685, 733
TseFI	GTSAC	2 cut(s)	28, 601
TseI	GCWGC	8 cut(s)	140, 182, 362, 612, 685, 688, 698, 740
Tsp45I	GTSAC	2 cut(s)	28, 601
TspDTI	ATGAA	3 cut(s)	512, 661, 924
TspGWI	ACGGA	1 cut(s)	292
TspRI	CASTG	3 cut(s)	37, 685, 733
XagI	CCTNNNNNAGG	1 cut(s)	792
XceI	RCATGY	4 cut(s)	124, 362, 465, 825
XspI	CTAG	5 cut(s)	92, 350, 476, 609, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.