Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004693.1

Orthogroup ID

OG0009056

Physical Location & Seq

Genomic Coordinates Reverse (-)

27818 .. 28602

Gene Structure 785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004693.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgcttggccctgatcagcctgtgattctgcacatgcttgatattcctcctgcagctgaggccttgaatggggtaaaaatggaactgattgatgccgcctttcctcttctcaaaggtgtcgtggctacaacagatgttgaggaagcttgtaaaggtgtcaacattgctgttatggttggtggattcccaaggaaggaaggtatggaaagaaaggatgtgatgtcaaaaaatgtatcaatctacaagggtcaagcttcagcattggaaaagcacgctgcttcagatgtcaaggttctggtggttgctaacccagcaaacaccaatgcactcatcttgaaagaatatgcaccttcaattccagagaaaaacatcacatgtcttacacgactagatcataaccgagcattggggcaaatctctcagaggctaaatgttcatgttggtgatgtaaagaatgttatcatctggggaaatcattcttcaactcagtatcctgatgtcaatcatgcaactgttggagacaaacctgtcagacaacttgtagctgatgatcaatggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006107 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016999 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019752 GO:0030060 GO:0034641 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0045333 GO:0046483 GO:0046496 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04964 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map04964

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

186

Amino Acids

20.15

Weight (kDa)

6.29

Isoelectric Point (pI)

32.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56720
fragaria_vesca	FvH4_3g14020 FvH4_3g14020 FvH4_3g14020
malus_domestica	MD05G1238800.v1.1 MD10G1216900.v1.1
prunus_persica	Prupe.4G127500_v2.0.a1 Prupe.4G127500_v2.0.a1
pyrus_communis	pycom05g21480 pycom10g18290
rosa_chinensis	RchiOBHm_Chr5g0023331
rosa_laevigata	RLG00000032714
rosa_multiflora	Rmu_sc0004693.1_g000004 Rmu_sc0009954.1_g000015
rosa_roxburghii	Rroxscaffold_1G00056000
rosa_rugosa	Rorug05G0078400 Rorug05G0078500
rosa_samantha	Rh5AG165000 Rh5BG164500 Rh5CG179400 Rh5DG166000
rosa_wichuraiana	Rw5G014870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	527
AciI	CCGC	1 cut(s)	96
AcuI	CTGAAG	2 cut(s)	240, 264
AfiI	CCNNNNNNNGG	3 cut(s)	69, 193, 406
AflIII	ACRYGT	1 cut(s)	374
AgsI	TTSAA	4 cut(s)	67, 337, 354, 483
AluBI	AGCT	4 cut(s)	56, 146, 254, 545
AluI	AGCT	4 cut(s)	56, 146, 254, 545
Alw26I	GTCTC	1 cut(s)	513
AoxI	GGCC	2 cut(s)	7, 60
ApeKI	GCWGC	2 cut(s)	53, 275
Asp700I	GAANNNNTTC	1 cut(s)	475
AspS9I	GGNCC	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	455
BbvCI	CCTCAGC	1 cut(s)	57
BbvI	GCAGC	2 cut(s)	65, 262
BciVI	GTATCC	1 cut(s)	501
BclI	TGATCA	2 cut(s)	13, 550
BcoDI	GTCTC	1 cut(s)	513
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	1 cut(s)	51
BfuI	GTATCC	1 cut(s)	501
BisI	GCNGC	3 cut(s)	54, 96, 276
BlsI	GCNGC	3 cut(s)	55, 97, 277
BmgT120I	GGNCC	1 cut(s)	8
BmsI	GCATC	1 cut(s)	82
Bpu10I	CCTNAGC	1 cut(s)	57
BsaBI	GATNNNNATC	1 cut(s)	501
BsaJI	CCNNGG	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	3 cut(s)	69, 193, 406
Bse3DI	GCAATG	1 cut(s)	162
Bse8I	GATNNNNATC	1 cut(s)	501
BseDI	CCNNGG	1 cut(s)	188
BseGI	GGATG	1 cut(s)	220
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	3 cut(s)	69, 193, 406
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	3 cut(s)	48, 434, 500
BseXI	GCAGC	2 cut(s)	65, 262
BseYI	CCCAGC	1 cut(s)	310
BsgI	GTGCAG	1 cut(s)	14
BshFI	GGCC	2 cut(s)	9, 62
BslI	CCNNNNNNNGG	3 cut(s)	69, 193, 406
BsmAI	GTCTC	1 cut(s)	513
BsnI	GGCC	2 cut(s)	9, 62
Bsp143I	GATC	3 cut(s)	13, 391, 550
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	2 cut(s)	9, 62
BspCNI	CTCAG	3 cut(s)	49, 433, 499
BspMAI	CTGCAG	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	162
BssECI	CCNNGG	1 cut(s)	188
BssMI	GATC	3 cut(s)	13, 391, 550
BssT1I	CCWWGG	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	514
Bst6I	CTCTTC	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	3 cut(s)	57, 420, 486
BstF5I	GGATG	1 cut(s)	220
BstKTI	GATC	3 cut(s)	16, 394, 553
BstMAI	GTCTC	1 cut(s)	513
BstMBI	GATC	3 cut(s)	13, 391, 550
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 311
BstNSI	RCATGY	2 cut(s)	37, 378
BstSFI	CTRYAG	1 cut(s)	51
BstV1I	GCAGC	2 cut(s)	65, 262
BsuI	GTATCC	1 cut(s)	501
BsuRI	GGCC	2 cut(s)	9, 62
BtsCI	GGATG	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	8
CviAII	CATG	4 cut(s)	34, 375, 437, 506
CviJI	RGCY	9 cut(s)	9, 19, 56, 62, 125, 146, 254, 427, 545
CviKI_1	RGCY	9 cut(s)	9, 19, 56, 62, 125, 146, 254, 427, 545
DdeI	CTNAG	3 cut(s)	57, 420, 486
DpnI	GATC	3 cut(s)	15, 393, 552
DpnII	GATC	3 cut(s)	13, 391, 550
DrdI	GACNNNNNNGTC	1 cut(s)	527
DseDI	GACNNNNNNGTC	1 cut(s)	527
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	188
Eco147I	AGGCCT	1 cut(s)	62
Eco57I	CTGAAG	2 cut(s)	240, 264
EcoT14I	CCWWGG	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	188
FaeI	CATG	4 cut(s)	37, 378, 440, 509
FaiI	YATR	8 cut(s)	35, 173, 203, 345, 376, 396, 438, 507
FatI	CATG	4 cut(s)	33, 374, 436, 505
FbaI	TGATCA	2 cut(s)	13, 550
Fnu4HI	GCNGC	3 cut(s)	54, 96, 276
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	3 cut(s)	54, 96, 276
FspBI	CTAG	1 cut(s)	389
GluI	GCNGC	3 cut(s)	54, 96, 276
GsaI	CCCAGC	1 cut(s)	314
HaeIII	GGCC	2 cut(s)	9, 62
Hin1II	CATG	4 cut(s)	37, 378, 440, 509
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	2 cut(s)	144, 252
HinfI	GANTC	2 cut(s)	25, 183
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	3 cut(s)	283, 423, 533
Hpy188III	TCNNGA	3 cut(s)	334, 359, 494
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	3 cut(s)	187, 191, 360
HpyCH4III	ACNGT	1 cut(s)	514
HpyCH4V	TGCA	5 cut(s)	31, 53, 326, 347, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 311
HpyF3I	CTNAG	3 cut(s)	57, 420, 486
Hsp92II	CATG	4 cut(s)	37, 378, 440, 509
Ksp22I	TGATCA	2 cut(s)	13, 550
Kzo9I	GATC	3 cut(s)	13, 391, 550
LpnPI	CCDG	9 cut(s)	24, 33, 63, 281, 324, 372, 451, 507, 540
Lsp1109I	GCAGC	2 cut(s)	65, 262
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	1 cut(s)	389
MalI	GATC	3 cut(s)	15, 393, 552
MboI	GATC	3 cut(s)	13, 391, 550
MboII	GAAGA	2 cut(s)	98, 471
MluCI	AATT	1 cut(s)	354
MmeI	TCCRAC	1 cut(s)	496
MnlI	CCTC	5 cut(s)	52, 57, 114, 133, 417
MroXI	GAANNNNTTC	1 cut(s)	475
MslI	CAYNNNNRTG	1 cut(s)	441
MspA1I	CMGCKG	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	59, 311
NdeII	GATC	3 cut(s)	13, 391, 550
NlaIII	CATG	4 cut(s)	37, 378, 440, 509
NspI	RCATGY	2 cut(s)	37, 378
PceI	AGGCCT	1 cut(s)	62
PciI	ACATGT	1 cut(s)	374
PdmI	GAANNNNTTC	1 cut(s)	475
PfeI	GAWTC	2 cut(s)	25, 183
PkrI	GCNGC	3 cut(s)	55, 97, 277
PscI	ACATGT	1 cut(s)	374
PspFI	CCCAGC	1 cut(s)	310
PspPI	GGNCC	1 cut(s)	8
PstI	CTGCAG	1 cut(s)	55
PvuII	CAGCTG	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	441
SatI	GCNGC	3 cut(s)	54, 96, 276
Sau3AI	GATC	3 cut(s)	13, 391, 550
Sau96I	GGNCC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	82
SfcI	CTRYAG	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	441
Sse9I	AATT	1 cut(s)	354
SseBI	AGGCCT	1 cut(s)	62
SsiI	CCGC	1 cut(s)	96
SspMI	CTAG	1 cut(s)	389
StuI	AGGCCT	1 cut(s)	62
StyI	CCWWGG	1 cut(s)	188
TaaI	ACNGT	1 cut(s)	514
TasI	AATT	1 cut(s)	354
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	2 cut(s)	25, 183
TseI	GCWGC	2 cut(s)	53, 275
TspDTI	ATGAA	1 cut(s)	425
XceI	RCATGY	2 cut(s)	37, 378
XmnI	GAANNNNTTC	1 cut(s)	475
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.