Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009056

Physical Location & Seq

Genomic Coordinates Forward (+)

6784586 .. 6785929

Gene Structure 1344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0078400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGTTCCAGAGTATCATCACCACCCCTACGACCCTGCTGGTCCTCATGCTCCTCCTCATGTCGATGGCTTTGGTGCAATAAGAAACAGAAAGCAGACCCAGAAAACGACAGTTGATTACACTACCTCTGTCGTGCGATACACACAGACTCGAAAGCGGCAGCGTGATGCAAGGGATACAACAGTGTTGCAACCTACACCAGCAGCATCAATCAATTCGTTGCCGCCGGTTGCGTATTCAGATAACCCATCTAGGAGCTTTGCTGCAAAGTTTGTGCATGCTTGTACAAATTACAGAGCCCGTGCTTCTCCGATTAATCGGGTTTTGTGGACACCTTCCGGGAGGCGTCTCATTACAGGGTCGCAAAATGGGGAGTTCACTCTTTGGGATGGTCAGTCATTTAACTATGAATTGAGTTTTCTGGCTCATGATCAAGCAGTCAGGTCTATGGCGTGGAGTTATGATGGTGAGAATTGGATTTCTGGTGATGATGGGGGATCAATAAAGTATTGGACGAGTAACATGAACAATGTGCTAGTCAATGAATCTGCTCACCGAGAATCGGTTCGGGACTTGAGCTTTTGTAGGACTAATTTGAAGTTCTGTTCATGTTCGGATGATACTTATGTGAAAATCTGGGATTATGAACGGTGCCAAGAAGTGCACAGATTGACTGGCCATGGTTGGAATGTGAAGAGTGTTGACTGGCACCCTACAAAGTCTCTAATAGCTTCAGGTGGGAAAGACAGTGTTGTCAAACTGTGGGATGCTAGGACAGGGAGAGAGCTCTGTTCATTTCATGATCACAAAAATTGGGTGCATTCTGTTAAGTGGAACCGAAATGGTAACTGTCTGCTGACTGCTTCTAAGGACCAAGTCATTAAGCTTTACGACATGAGGGCTATGAAGGAGCTTGAATCATTCCGCGGGCATCGGAATGAAGTGACTGCTCTAGCTTGGCATCCTTTTCATGAAGAATATTTTGTCAGTGGGAGTAGTGATGGATCCATTTTCCATTGGCTTGTTGGGCATGAAACTCCCCAGGTTGAAGTTCCTAATGCACACAGTAACAATCACAATAACAGTGTGTGGGATCTCCAATGGCATCCAATTGGTCATATGCTTTGCAGTGGTAGCAATGATCGCACAACAAAGTTTTGGTGCAGAAATAGGCCAGGAGATAAATGTAACATCAGTCAGAATCAAAGTATTGGTGATCGAAGTTCTGCTTTTGCTGGTCACATGACTGGTAATTTTCCATTTCCATTACATGAAGGACAACCAACAATTGCTACTGGAAACCAAGGAACCAATATTATTCCAGGTGTTGGATTTGCAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006107 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016999 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019752 GO:0030060 GO:0034641 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0045333 GO:0046483 GO:0046496 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04964 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map04964

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

447

Amino Acids

50.64

Weight (kDa)

8.46

Isoelectric Point (pI)

33.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_TEP1_2nd	PF25047	89 - 216	4.3e-07	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	96 - 273	1.8e-29	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	96 - 265	4.7e-24	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	99 - 250	5e-24	WDR3 first beta-propeller domain
WD40_Gbeta	PF25391	99 - 308	1.6e-19	G protein beta WD-40 repeat protein
Beta-prop_IFT140_1st	PF23383	101 - 188	7.3e-08	IFT140 first beta-propeller
Beta-prop_WDR5	PF25175	102 - 181	5e-07	WDR5 beta-propeller domain
Beta-prop_EIPR1	PF23609	106 - 255	2.7e-07	EIPR1 beta-propeller
WD40_WDHD1_1st	PF24817	106 - 264	1.2e-15	WDHD1 first WD40 domain
WD40_Prp19	PF24814	111 - 307	6.2e-31	Prp19 WD40 domain
Beta-prop_WDR3_2nd	PF25172	133 - 256	3.1e-15	WDR3 second beta-propeller domain
EIF3I	PF24805	140 - 222	1.5e-07	EIF3I
Beta-prop_CAF1B_HIR1	PF24105	142 - 253	3.6e-07	CAF1B/HIR1 beta-propeller domain
WDR55	PF24796	175 - 340	4.4e-18	WDR55
Beta-prop_WDR36-Utp21_2nd	PF25168	180 - 341	4.1e-16	WDR36/Utp21 second beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	183 - 266	4.9e-06	TEP-1 second beta-propeller
Beta-prop_WDR5	PF25175	184 - 303	6.8e-29	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	197 - 341	6.4e-22	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	201 - 287	3.4e-07	WDR90/POC16, second beta-propeller
Beta-prop_SCAP	PF24017	203 - 300	1.9e-06	SCAP Beta-propeller
Beta-prop_WDR3_1st	PF25173	219 - 387	2.2e-28	WDR3 first beta-propeller domain
WD40	PF00400	219 - 256	5e-09	WD domain, G-beta repeat
Beta-prop_TEP1_2nd	PF25047	220 - 318	8.2e-12	TEP-1 second beta-propeller
Beta-prop_WDR3_2nd	PF25172	223 - 342	1.3e-13	WDR3 second beta-propeller domain
Beta-prop_IFT140_1st	PF23383	224 - 295	1.2e-06	IFT140 first beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	224 - 304	3.7e-10	CAF1B/HIR1 beta-propeller domain
EIF3I	PF24805	225 - 312	2.6e-10	EIF3I
Beta-prop_EML	PF23409	225 - 330	2.1e-09	Echinoderm microtubule-associated protein first beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	231 - 387	2.1e-08	MABP1/WDR62 second WD40 domain
Beta-prop_WDR19_1st	PF23389	234 - 384	2.4e-07	WDR19 first beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	246 - 388	2.5e-09	WDR36/Utp21 first beta-propeller
Beta-prop_EIPR1	PF23609	258 - 387	3.8e-07	EIPR1 beta-propeller
WD40	PF00400	261 - 298	8.1e-07	WD domain, G-beta repeat
WD40_CDC20-Fz	PF24807	261 - 391	8.8e-22	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	267 - 387	7.8e-18	WDR5 beta-propeller domain
Beta-prop_DCAF4	PF23761	269 - 329	2.3e-06	DDB1- and CUL4-associated factor 4 beta-propeller domain
Beta-prop_THOC3	PF25174	269 - 387	9.9e-23	THOC3 beta-propeller domain
Beta-prop_Aladin	PF25460	271 - 383	7.3e-06	Aladin seven-bladed propeller
WD40_WDHD1_1st	PF24817	273 - 391	8.8e-13	WDHD1 first WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	285 - 380	4.4e-06	WDR90/POC16, second beta-propeller
WD40	PF00400	303 - 340	5.9e-06	WD domain, G-beta repeat
WD40_Prp19	PF24814	305 - 387	1.6e-09	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56720
fragaria_vesca	FvH4_3g14020 FvH4_3g14020 FvH4_3g14020
malus_domestica	MD05G1238800.v1.1 MD10G1216900.v1.1
prunus_persica	Prupe.4G127500_v2.0.a1 Prupe.4G127500_v2.0.a1
pyrus_communis	pycom05g21480 pycom10g18290
rosa_chinensis	RchiOBHm_Chr5g0023331
rosa_laevigata	RLG00000032714
rosa_multiflora	Rmu_sc0004693.1_g000004 Rmu_sc0009954.1_g000015
rosa_roxburghii	Rroxscaffold_1G00056000
rosa_rugosa	Rorug05G0078400 Rorug05G0078500
rosa_samantha	Rh5AG165000 Rh5BG164500 Rh5CG179400 Rh5DG166000
rosa_wichuraiana	Rw5G014870

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	752
AccB1I	GGYRCC	2 cut(s)	651, 708
AccB7I	CCANNNNNTGG	1 cut(s)	1328
AccII	CGCG	1 cut(s)	927
AciI	CCGC	4 cut(s)	157, 224, 925, 927
AclWI	GGATC	4 cut(s)	505, 999, 1012, 1101
AcoI	YGGCCR	1 cut(s)	676
AcuI	CTGAAG	1 cut(s)	717
AcyI	GRCGYC	1 cut(s)	346
AfaI	GTAC	1 cut(s)	286
AfiI	CCNNNNNNNGG	2 cut(s)	562, 1328
AgsI	TTSAA	3 cut(s)	598, 917, 1049
AjnI	CCWGG	3 cut(s)	1041, 1174, 1321
AluBI	AGCT	7 cut(s)	258, 579, 731, 787, 886, 913, 956
AluI	AGCT	7 cut(s)	258, 579, 731, 787, 886, 913, 956
Alw21I	GWGCWC	2 cut(s)	666, 789
Alw26I	GTCTC	2 cut(s)	353, 726
Alw44I	GTGCAC	1 cut(s)	662
AlwI	GGATC	4 cut(s)	505, 999, 1012, 1101
AoxI	GGCC	2 cut(s)	676, 1172
ApaLI	GTGCAC	1 cut(s)	662
ApeKI	GCWGC	3 cut(s)	160, 203, 263
AseI	ATTAAT	1 cut(s)	315
Asp700I	GAANNNNTTC	1 cut(s)	564
AspS9I	GGNCC	2 cut(s)	41, 871
AsuC2I	CCSGG	1 cut(s)	340
AsuHPI	GGTGA	5 cut(s)	11, 479, 497, 545, 1226
AvaII	GGWCC	2 cut(s)	41, 871
BaeGI	GKGCMC	1 cut(s)	666
BaeI	ACNNNNGTAYC	4 cut(s)	168, 201, 612, 645
BalI	TGGCCA	1 cut(s)	678
BamHI	GGATCC	1 cut(s)	1004
BanI	GGYRCC	2 cut(s)	651, 708
BanII	GRGCYC	2 cut(s)	301, 789
Bbv12I	GWGCWC	2 cut(s)	666, 789
BbvI	GCAGC	3 cut(s)	172, 215, 250
BccI	CCATC	6 cut(s)	59, 256, 383, 458, 485, 995
BciT130I	CCWGG	3 cut(s)	1043, 1176, 1323
BciVI	GTATCC	1 cut(s)	169
BclI	TGATCA	2 cut(s)	430, 802
BcnI	CCSGG	1 cut(s)	340
BcoDI	GTCTC	2 cut(s)	353, 726
BfaI	CTAG	4 cut(s)	252, 536, 771, 953
BfuI	GTATCC	1 cut(s)	169
BisI	GCNGC	5 cut(s)	158, 161, 204, 224, 264
BlsI	GCNGC	5 cut(s)	159, 162, 205, 225, 265
Bme1390I	CCNGG	4 cut(s)	340, 1043, 1176, 1323
Bme18I	GGWCC	2 cut(s)	41, 871
BmgT120I	GGNCC	2 cut(s)	41, 871
BmiI	GGNNCC	6 cut(s)	6, 653, 710, 836, 1006, 1309
BmrFI	CCNGG	4 cut(s)	340, 1043, 1176, 1323
BmsI	GCATC	6 cut(s)	157, 215, 757, 940, 970, 1114
BpuEI	CTTGAG	1 cut(s)	595
BpuMI	CCSGG	1 cut(s)	340
BsaHI	GRCGYC	1 cut(s)	346
BsaJI	CCNNGG	4 cut(s)	679, 925, 1041, 1303
Bsc4I	CCNNNNNNNGG	2 cut(s)	562, 1328
Bse118I	RCCGGY	1 cut(s)	226
Bse1I	ACTGG	4 cut(s)	679, 710, 1252, 1300
Bse3DI	GCAATG	1 cut(s)	1144
BseBI	CCWGG	3 cut(s)	1043, 1176, 1323
BseDI	CCNNGG	4 cut(s)	679, 925, 1041, 1303
BseGI	GGATG	5 cut(s)	394, 622, 772, 961, 1105
BseLI	CCNNNNNNNGG	2 cut(s)	562, 1328
BseMI	GCAATG	1 cut(s)	1144
BseNI	ACTGG	4 cut(s)	679, 710, 1252, 1300
BseRI	GAGGAG	2 cut(s)	42, 45
BseSI	GKGCMC	1 cut(s)	666
BseXI	GCAGC	3 cut(s)	172, 215, 250
BsgI	GTGCAG	1 cut(s)	1183
Bsh1236I	CGCG	1 cut(s)	927
BshFI	GGCC	2 cut(s)	678, 1174
BshNI	GGYRCC	2 cut(s)	651, 708
BsiHKAI	GWGCWC	2 cut(s)	666, 789
BsiSI	CCGG	2 cut(s)	227, 339
BslFI	GGGAC	1 cut(s)	584
BslI	CCNNNNNNNGG	2 cut(s)	562, 1328
BsmAI	GTCTC	2 cut(s)	353, 726
BsmBI	CGTCTC	1 cut(s)	353
BsmFI	GGGAC	1 cut(s)	584
BsmI	GAATGC	1 cut(s)	820
BsnI	GGCC	2 cut(s)	678, 1174
Bsp1286I	GDGCHC	3 cut(s)	301, 666, 789
Bsp1407I	TGTACA	1 cut(s)	284
Bsp143I	GATC	7 cut(s)	430, 497, 802, 1004, 1093, 1141, 1216
Bsp19I	CCATGG	1 cut(s)	679
BspACI	CCGC	4 cut(s)	157, 224, 925, 927
BspANI	GGCC	2 cut(s)	678, 1174
BspFNI	CGCG	1 cut(s)	927
BspHI	TCATGA	3 cut(s)	427, 799, 970
BspLI	GGNNCC	6 cut(s)	6, 653, 710, 836, 1006, 1309
BspPI	GGATC	4 cut(s)	505, 999, 1012, 1101
BspT107I	GGYRCC	2 cut(s)	651, 708
BsrDI	GCAATG	1 cut(s)	1144
BsrFI	RCCGGY	1 cut(s)	226
BsrGI	TGTACA	1 cut(s)	284
BsrI	ACTGG	4 cut(s)	679, 710, 1252, 1300
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	4 cut(s)	679, 925, 1041, 1303
BssMI	GATC	7 cut(s)	430, 497, 802, 1004, 1093, 1141, 1216
BssNI	GRCGYC	1 cut(s)	346
BssT1I	CCWWGG	2 cut(s)	679, 1303
Bst2UI	CCWGG	3 cut(s)	1043, 1176, 1323
Bst4CI	ACNGT	8 cut(s)	112, 184, 651, 749, 762, 851, 1067, 1085
Bst6I	CTCTTC	1 cut(s)	689
BstACI	GRCGYC	1 cut(s)	346
BstAUI	TGTACA	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	279, 929
BstDEI	CTNAG	1 cut(s)	867
BstDSI	CCRYGG	2 cut(s)	679, 925
BstF5I	GGATG	5 cut(s)	394, 622, 772, 961, 1105
BstFNI	CGCG	1 cut(s)	927
BstKTI	GATC	7 cut(s)	433, 500, 805, 1007, 1096, 1144, 1219
BstMAI	GTCTC	2 cut(s)	353, 726
BstMBI	GATC	7 cut(s)	430, 497, 802, 1004, 1093, 1141, 1216
BstMWI	GCNNNNNNNGC	3 cut(s)	1027, 1134, 1143
BstNI	CCWGG	3 cut(s)	1043, 1176, 1323
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	4 cut(s)	338, 1041, 1174, 1321
BstSLI	GKGCMC	1 cut(s)	666
BstUI	CGCG	1 cut(s)	927
BstV1I	GCAGC	3 cut(s)	172, 215, 250
BstX2I	RGATCY	2 cut(s)	1004, 1093
BstYI	RGATCY	2 cut(s)	1004, 1093
BsuI	GTATCC	1 cut(s)	169
BsuRI	GGCC	2 cut(s)	678, 1174
BtgI	CCRYGG	2 cut(s)	679, 925
BtsCI	GGATG	5 cut(s)	394, 622, 772, 961, 1105
BtsI	GCAGTG	1 cut(s)	1135
BtsIMutI	CAGTG	5 cut(s)	189, 754, 994, 1090, 1135
Cac8I	GCNNGC	2 cut(s)	279, 929
CciI	TCATGA	3 cut(s)	427, 799, 970
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	2 cut(s)	41, 871
Cfr42I	CCGCGG	1 cut(s)	928
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	1 cut(s)	285
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	1 cut(s)	867
DpnI	GATC	7 cut(s)	432, 499, 804, 1006, 1095, 1143, 1218
DpnII	GATC	7 cut(s)	430, 497, 802, 1004, 1093, 1141, 1216
DrdI	GACNNNNNNGTC	1 cut(s)	752
DseDI	GACNNNNNNGTC	1 cut(s)	752
EaeI	YGGCCR	1 cut(s)	676
Eam1104I	CTCTTC	1 cut(s)	689
EarI	CTCTTC	1 cut(s)	689
Ecl136II	GAGCTC	1 cut(s)	787
Eco130I	CCWWGG	2 cut(s)	679, 1303
Eco24I	GRGCYC	2 cut(s)	301, 789
Eco47I	GGWCC	2 cut(s)	41, 871
Eco53kI	GAGCTC	1 cut(s)	787
Eco57I	CTGAAG	1 cut(s)	717
EcoICRI	GAGCTC	1 cut(s)	787
EcoRII	CCWGG	3 cut(s)	1041, 1174, 1321
EcoT14I	CCWWGG	2 cut(s)	679, 1303
EcoT38I	GRGCYC	2 cut(s)	301, 789
ErhI	CCWWGG	2 cut(s)	679, 1303
Esp3I	CGTCTC	1 cut(s)	353
FalI	AAGNNNNNCTT	2 cut(s)	1213, 1245
FaqI	GGGAC	1 cut(s)	584
FauI	CCCGC	1 cut(s)	920
FauNDI	CATATG	1 cut(s)	1119
FbaI	TGATCA	2 cut(s)	430, 802
Fnu4HI	GCNGC	5 cut(s)	158, 161, 204, 224, 264
FokI	GGATG	5 cut(s)	401, 629, 779, 948, 1092
FriOI	GRGCYC	2 cut(s)	301, 789
Fsp4HI	GCNGC	5 cut(s)	158, 161, 204, 224, 264
FspBI	CTAG	4 cut(s)	252, 536, 771, 953
GluI	GCNGC	5 cut(s)	158, 161, 204, 224, 264
HaeIII	GGCC	2 cut(s)	678, 1174
HapII	CCGG	2 cut(s)	227, 339
HgaI	GACGC	1 cut(s)	335
Hin1I	GRCGYC	1 cut(s)	346
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HindIII	AAGCTT	1 cut(s)	884
HinfI	GANTC	5 cut(s)	148, 545, 560, 917, 1201
HpaII	CCGG	2 cut(s)	227, 339
HphI	GGTGA	5 cut(s)	11, 479, 497, 545, 1226
Hpy166II	GTNNAC	4 cut(s)	330, 378, 664, 703
Hpy188I	TCNGA	5 cut(s)	241, 312, 616, 936, 1200
Hpy188III	TCNNGA	5 cut(s)	8, 428, 569, 800, 971
Hpy8I	GTNNAC	4 cut(s)	330, 378, 664, 703
HpyAV	CCTTC	3 cut(s)	345, 901, 1268
HpyCH4III	ACNGT	8 cut(s)	112, 184, 651, 749, 762, 851, 1067, 1085
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1027, 1134, 1143
HpyF3I	CTNAG	1 cut(s)	867
Hsp92I	GRCGYC	1 cut(s)	346
Ksp22I	TGATCA	2 cut(s)	430, 802
KspI	CCGCGG	1 cut(s)	928
Kzo9I	GATC	7 cut(s)	430, 497, 802, 1004, 1093, 1141, 1216
LmnI	GCTCC	3 cut(s)	55, 255, 910
Lsp1109I	GCAGC	3 cut(s)	172, 215, 250
LweI	GCATC	6 cut(s)	157, 215, 757, 940, 970, 1114
MaeI	CTAG	4 cut(s)	252, 536, 771, 953
MaeIII	GTNAC	6 cut(s)	518, 845, 943, 1067, 1187, 1238
MalI	GATC	7 cut(s)	432, 499, 804, 1006, 1095, 1143, 1218
MboI	GATC	7 cut(s)	430, 497, 802, 1004, 1093, 1141, 1216
MboII	GAAGA	2 cut(s)	706, 986
MfeI	CAATTG	2 cut(s)	1110, 1287
MflI	RGATCY	2 cut(s)	1004, 1093
MhlI	GDGCHC	3 cut(s)	301, 666, 789
MlsI	TGGCCA	1 cut(s)	678
MluNI	TGGCCA	1 cut(s)	678
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	2 cut(s)	665, 1309
MnlI	CCTC	6 cut(s)	54, 63, 66, 136, 336, 891
Mox20I	TGGCCA	1 cut(s)	678
MroXI	GAANNNNTTC	1 cut(s)	564
MscI	TGGCCA	1 cut(s)	678
MseI	TTAA	5 cut(s)	315, 402, 828, 882, 1342
MslI	CAYNNNNRTG	2 cut(s)	63, 936
Msp20I	TGGCCA	1 cut(s)	678
MspA1I	CMGCKG	1 cut(s)	927
MspI	CCGG	2 cut(s)	227, 339
MspR9I	CCNGG	4 cut(s)	340, 1043, 1176, 1323
MunI	CAATTG	2 cut(s)	1110, 1287
Mva1269I	GAATGC	1 cut(s)	820
MvaI	CCWGG	3 cut(s)	1043, 1176, 1323
MvnI	CGCG	1 cut(s)	927
MwoI	GCNNNNNNNGC	3 cut(s)	1027, 1134, 1143
NciI	CCSGG	1 cut(s)	340
NcoI	CCATGG	1 cut(s)	679
NdeI	CATATG	1 cut(s)	1119
NdeII	GATC	7 cut(s)	430, 497, 802, 1004, 1093, 1141, 1216
NlaIV	GGNNCC	6 cut(s)	6, 653, 710, 836, 1006, 1309
NmuCI	GTSAC	2 cut(s)	943, 1238
NspI	RCATGY	1 cut(s)	281
PaeI	GCATGC	1 cut(s)	281
PagI	TCATGA	3 cut(s)	427, 799, 970
PctI	GAATGC	1 cut(s)	820
PdmI	GAANNNNTTC	1 cut(s)	564
PfeI	GAWTC	4 cut(s)	545, 560, 917, 1201
PflFI	GACNNNGTC	1 cut(s)	875
PflMI	CCANNNNNTGG	1 cut(s)	1328
PfoI	TCCNGGA	1 cut(s)	338
PkrI	GCNGC	5 cut(s)	159, 162, 205, 225, 265
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PshBI	ATTAAT	1 cut(s)	315
Psp124BI	GAGCTC	1 cut(s)	789
Psp6I	CCWGG	3 cut(s)	1041, 1174, 1321
PspGI	CCWGG	3 cut(s)	1041, 1174, 1321
PspN4I	GGNNCC	6 cut(s)	6, 653, 710, 836, 1006, 1309
PspPI	GGNCC	2 cut(s)	41, 871
PsuI	RGATCY	2 cut(s)	1004, 1093
PsyI	GACNNNGTC	1 cut(s)	875
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
RseI	CAYNNNNRTG	2 cut(s)	63, 936
SacI	GAGCTC	1 cut(s)	789
SacII	CCGCGG	1 cut(s)	928
SaqAI	TTAA	5 cut(s)	315, 402, 828, 882, 1342
SatI	GCNGC	5 cut(s)	158, 161, 204, 224, 264
Sau3AI	GATC	7 cut(s)	430, 497, 802, 1004, 1093, 1141, 1216
Sau96I	GGNCC	2 cut(s)	41, 871
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	4 cut(s)	340, 1043, 1176, 1323
SduI	GDGCHC	3 cut(s)	301, 666, 789
SfaNI	GCATC	6 cut(s)	157, 215, 757, 940, 970, 1114
Sfr303I	CCGCGG	1 cut(s)	928
SgrBI	CCGCGG	1 cut(s)	928
SinI	GGWCC	2 cut(s)	41, 871
SmiMI	CAYNNNNRTG	2 cut(s)	63, 936
SmlI	CTYRAG	1 cut(s)	574
SmoI	CTYRAG	1 cut(s)	574
SphI	GCATGC	1 cut(s)	281
SsiI	CCGC	4 cut(s)	157, 224, 925, 927
SspI	AATATT	2 cut(s)	980, 1315
SspMI	CTAG	4 cut(s)	252, 536, 771, 953
SstI	GAGCTC	1 cut(s)	789
StyD4I	CCNGG	4 cut(s)	338, 1041, 1174, 1321
StyI	CCWWGG	2 cut(s)	679, 1303
TaaI	ACNGT	8 cut(s)	112, 184, 651, 749, 762, 851, 1067, 1085
TaqI	TCGA	3 cut(s)	63, 151, 1219
TatI	WGTACW	1 cut(s)	284
TauI	GCSGC	2 cut(s)	160, 226
TfiI	GAWTC	4 cut(s)	545, 560, 917, 1201
Tru1I	TTAA	5 cut(s)	315, 402, 828, 882, 1342
Tru9I	TTAA	5 cut(s)	315, 402, 828, 882, 1342
TscAI	CASTG	5 cut(s)	189, 754, 994, 1090, 1135
TseFI	GTSAC	2 cut(s)	943, 1238
TseI	GCWGC	3 cut(s)	160, 203, 263
Tsp45I	GTSAC	2 cut(s)	943, 1238
TspRI	CASTG	5 cut(s)	189, 754, 994, 1090, 1135
Tth111I	GACNNNGTC	1 cut(s)	875
Van91I	CCANNNNNTGG	1 cut(s)	1328
VneI	GTGCAC	1 cut(s)	662
VpaK11BI	GGWCC	2 cut(s)	41, 871
VspI	ATTAAT	1 cut(s)	315
XceI	RCATGY	1 cut(s)	281
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1022
XmnI	GAANNNNTTC	1 cut(s)	564
XspI	CTAG	4 cut(s)	252, 536, 771, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.