Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009056

Physical Location & Seq

Genomic Coordinates Reverse (-)

17340481 .. 17342196

Gene Structure 1716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30322

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGCTTGATATTCCTCCTGCAGCTGAGGCCTTGAATGGGGTAAAAATGGAACTGATTGATGCTGCCTTTCCTCTTCTCAAAGGTGTCGTGGCTACAACAGATGTTGAGGAAGCTTGTAAAGGTGTCAACATTGCTGTTATGGTTGGTGGATTCCCAAGGAAGGAAGGTATGGAAAGAAAGGATGTGATGTCAAAAAATGTATCAATCTACAAGGGTCAAGCTTCAGCATTGGAAAAGCACGCTGCTTCAGATGTCAAGGTTCTGGTGGTTGCTAACCCAGCAAACACCAATGCACTCATCTTGAAAGAATATGCACCTTCAATTCCAGAGAAAAACATCACATGTCTTACACGACTAGATCATAACCGAGCATTGGGGCAAATCTCTCAGAGGCTAAATGTTCATGTTGGTGATGTAAAGAATGTTATCATCTGGGGAAATCATTCTTCAACTCAGTATCCTGATGTCAATCATGCAACTGTTGGAGACAAACCCGTCAGACAACTTGTAGCTGATGATCAATGGTTGAATACCGAGTTCATCACCACCGTGCAGCAGCGTGGCGCTGCCATTATCAAAGCTCGGAAACTATCAAGTGCTTTGTCTGCTGCAAGTTCTGCCTGTGATCACATACGCGATTGGGTTCTTGGGACTCCTAAGGGGACACATGTTTCCATGGGTGTGTATTCTGATGGTTCTTATGGAATCCAGGAAGGCCTCATTTACTCTTTCCCTGTCACCTGTGAGAAAGGGGAATGGAAAATTGTGCAAGGACTGAAGATTGACGAGTTCTCGAGGAAAAAGCTTGATGCAACTGCACAAGAGCTCATTGAAGAGAAATCGTTGGCCCATTCATGTCTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006107 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016999 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019752 GO:0030060 GO:0034641 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0045333 GO:0046483 GO:0046496 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04964 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map04964

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

288

Amino Acids

31.27

Weight (kDa)

6.71

Isoelectric Point (pI)

30.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ldh_1_N	PF00056	2 - 113	7.9e-24	lactate/malate dehydrogenase, NAD binding domain
Ldh_1_C	PF02866	117 - 281	2.5e-45	lactate/malate dehydrogenase, alpha/beta C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56720
fragaria_vesca	FvH4_3g14020 FvH4_3g14020 FvH4_3g14020
malus_domestica	MD05G1238800.v1.1 MD10G1216900.v1.1
prunus_persica	Prupe.4G127500_v2.0.a1 Prupe.4G127500_v2.0.a1
pyrus_communis	pycom05g21480 pycom10g18290
rosa_chinensis	RchiOBHm_Chr5g0023331
rosa_laevigata	RLG00000032714
rosa_multiflora	Rmu_sc0004693.1_g000004 Rmu_sc0009954.1_g000015
rosa_roxburghii	Rroxscaffold_1G00056000
rosa_rugosa	Rorug05G0078400 Rorug05G0078500
rosa_samantha	Rh5AG165000 Rh5BG164500 Rh5CG179400 Rh5DG166000
rosa_wichuraiana	Rw5G014870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	494
AccII	CGCG	1 cut(s)	636
AcuI	CTGAAG	3 cut(s)	207, 231, 797
AfiI	CCNNNNNNNGG	3 cut(s)	36, 160, 373
AflIII	ACRYGT	2 cut(s)	341, 667
AgsI	TTSAA	6 cut(s)	34, 304, 321, 450, 529, 833
AjnI	CCWGG	1 cut(s)	708
AleI	CACNNNNGTG	1 cut(s)	548
AluBI	AGCT	7 cut(s)	23, 113, 221, 512, 581, 805, 826
AluI	AGCT	7 cut(s)	23, 113, 221, 512, 581, 805, 826
Alw21I	GWGCWC	1 cut(s)	828
Alw26I	GTCTC	2 cut(s)	480, 863
Ama87I	CYCGRG	1 cut(s)	793
AoxI	GGCC	3 cut(s)	27, 715, 846
ApeKI	GCWGC	7 cut(s)	20, 62, 242, 553, 556, 566, 608
Asp700I	GAANNNNTTC	1 cut(s)	442
AspLEI	GCGC	1 cut(s)	566
AspS9I	GGNCC	1 cut(s)	847
AsuHPI	GGTGA	3 cut(s)	422, 535, 730
AvaI	CYCGRG	1 cut(s)	793
AxyI	CCTNAGG	1 cut(s)	657
BanII	GRGCYC	1 cut(s)	828
Bbv12I	GWGCWC	1 cut(s)	828
BbvCI	CCTCAGC	1 cut(s)	24
BbvI	GCAGC	7 cut(s)	32, 49, 229, 553, 565, 568, 595
BccI	CCATC	1 cut(s)	686
BciT130I	CCWGG	1 cut(s)	710
BciVI	GTATCC	1 cut(s)	468
BclI	TGATCA	2 cut(s)	517, 625
BcoDI	GTCTC	2 cut(s)	480, 863
BfaI	CTAG	1 cut(s)	356
BfmI	CTRYAG	1 cut(s)	18
BfoI	RGCGCY	1 cut(s)	567
BfuI	GTATCC	1 cut(s)	468
BisI	GCNGC	7 cut(s)	21, 63, 243, 554, 557, 567, 609
BlsI	GCNGC	7 cut(s)	22, 64, 244, 555, 558, 568, 610
Bme1390I	CCNGG	1 cut(s)	710
BmeT110I	CYCGRG	1 cut(s)	793
BmgT120I	GGNCC	1 cut(s)	847
BmrFI	CCNGG	1 cut(s)	710
BmsI	GCATC	2 cut(s)	49, 799
Bpu10I	CCTNAGC	1 cut(s)	24
BsaBI	GATNNNNATC	1 cut(s)	468
BsaJI	CCNNGG	2 cut(s)	155, 675
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 160, 373
Bse21I	CCTNAGG	1 cut(s)	657
Bse3DI	GCAATG	1 cut(s)	129
Bse8I	GATNNNNATC	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	710
BseDI	CCNNGG	2 cut(s)	155, 675
BseGI	GGATG	1 cut(s)	187
BseJI	GATNNNNATC	1 cut(s)	468
BseLI	CCNNNNNNNGG	3 cut(s)	36, 160, 373
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	3 cut(s)	15, 401, 467
BseXI	GCAGC	7 cut(s)	32, 49, 229, 553, 565, 568, 595
BseYI	CCCAGC	1 cut(s)	277
BsgI	GTGCAG	2 cut(s)	572, 801
Bsh1236I	CGCG	1 cut(s)	636
BshFI	GGCC	3 cut(s)	29, 717, 848
BsiHKAI	GWGCWC	1 cut(s)	828
BsiHKCI	CYCGRG	1 cut(s)	793
BslFI	GGGAC	2 cut(s)	664, 676
BslI	CCNNNNNNNGG	3 cut(s)	36, 160, 373
BsmAI	GTCTC	2 cut(s)	480, 863
BsmFI	GGGAC	2 cut(s)	664, 676
BsnI	GGCC	3 cut(s)	29, 717, 848
BsoBI	CYCGRG	1 cut(s)	793
Bsp1286I	GDGCHC	1 cut(s)	828
Bsp143I	GATC	3 cut(s)	358, 517, 625
Bsp19I	CCATGG	1 cut(s)	675
BspANI	GGCC	3 cut(s)	29, 717, 848
BspCNI	CTCAG	3 cut(s)	16, 400, 466
BspFNI	CGCG	1 cut(s)	636
BspMAI	CTGCAG	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	129
BssECI	CCNNGG	2 cut(s)	155, 675
BssMI	GATC	3 cut(s)	358, 517, 625
BssT1I	CCWWGG	2 cut(s)	155, 675
Bst2UI	CCWGG	1 cut(s)	710
Bst4CI	ACNGT	2 cut(s)	481, 550
Bst6I	CTCTTC	2 cut(s)	78, 828
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	4 cut(s)	24, 387, 453, 657
BstDSI	CCRYGG	1 cut(s)	675
BstF5I	GGATG	1 cut(s)	187
BstFNI	CGCG	1 cut(s)	636
BstH2I	RGCGCY	1 cut(s)	567
BstHHI	GCGC	1 cut(s)	566
BstKTI	GATC	3 cut(s)	361, 520, 628
BstMAI	GTCTC	2 cut(s)	480, 863
BstMBI	GATC	3 cut(s)	358, 517, 625
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 278, 605, 617
BstNI	CCWGG	1 cut(s)	710
BstNSI	RCATGY	2 cut(s)	345, 671
BstSCI	CCNGG	1 cut(s)	708
BstSFI	CTRYAG	1 cut(s)	18
BstUI	CGCG	1 cut(s)	636
BstV1I	GCAGC	7 cut(s)	32, 49, 229, 553, 565, 568, 595
Bsu36I	CCTNAGG	1 cut(s)	657
BsuI	GTATCC	1 cut(s)	468
BsuRI	GGCC	3 cut(s)	29, 717, 848
BtgI	CCRYGG	1 cut(s)	675
BtsCI	GGATG	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	240
CfoI	GCGC	1 cut(s)	566
Cfr13I	GGNCC	1 cut(s)	847
CviAII	CATG	6 cut(s)	342, 404, 473, 668, 676, 855
DdeI	CTNAG	4 cut(s)	24, 387, 453, 657
DpnI	GATC	3 cut(s)	360, 519, 627
DpnII	GATC	3 cut(s)	358, 517, 625
DrdI	GACNNNNNNGTC	1 cut(s)	494
DseDI	GACNNNNNNGTC	1 cut(s)	494
Eam1104I	CTCTTC	2 cut(s)	78, 828
EarI	CTCTTC	2 cut(s)	78, 828
Ecl136II	GAGCTC	1 cut(s)	826
Eco130I	CCWWGG	2 cut(s)	155, 675
Eco147I	AGGCCT	2 cut(s)	29, 717
Eco24I	GRGCYC	1 cut(s)	828
Eco53kI	GAGCTC	1 cut(s)	826
Eco57I	CTGAAG	3 cut(s)	207, 231, 797
Eco81I	CCTNAGG	1 cut(s)	657
Eco88I	CYCGRG	1 cut(s)	793
EcoICRI	GAGCTC	1 cut(s)	826
EcoRII	CCWGG	1 cut(s)	708
EcoT14I	CCWWGG	2 cut(s)	155, 675
EcoT38I	GRGCYC	1 cut(s)	828
ErhI	CCWWGG	2 cut(s)	155, 675
FaeI	CATG	6 cut(s)	345, 407, 476, 671, 679, 858
FaqI	GGGAC	2 cut(s)	664, 676
FatI	CATG	6 cut(s)	341, 403, 472, 667, 675, 854
FbaI	TGATCA	2 cut(s)	517, 625
Fnu4HI	GCNGC	7 cut(s)	21, 63, 243, 554, 557, 567, 609
FokI	GGATG	1 cut(s)	194
FriOI	GRGCYC	1 cut(s)	828
Fsp4HI	GCNGC	7 cut(s)	21, 63, 243, 554, 557, 567, 609
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	1 cut(s)	565
GluI	GCNGC	7 cut(s)	21, 63, 243, 554, 557, 567, 609
GsaI	CCCAGC	1 cut(s)	281
HaeII	RGCGCY	1 cut(s)	567
HaeIII	GGCC	3 cut(s)	29, 717, 848
HhaI	GCGC	1 cut(s)	566
Hin1II	CATG	6 cut(s)	345, 407, 476, 671, 679, 858
Hin6I	GCGC	1 cut(s)	564
HinP1I	GCGC	1 cut(s)	564
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HindIII	AAGCTT	3 cut(s)	111, 219, 803
HinfI	GANTC	3 cut(s)	150, 652, 705
HphI	GGTGA	3 cut(s)	422, 535, 730
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	5 cut(s)	250, 390, 500, 585, 691
Hpy188III	TCNNGA	4 cut(s)	301, 326, 461, 793
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	4 cut(s)	154, 158, 327, 707
HpyCH4III	ACNGT	2 cut(s)	481, 550
HpyCH4V	TGCA	9 cut(s)	20, 293, 314, 476, 553, 611, 769, 812, 818
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 278, 605, 617
HpyF3I	CTNAG	4 cut(s)	24, 387, 453, 657
Hsp92II	CATG	6 cut(s)	345, 407, 476, 671, 679, 858
HspAI	GCGC	1 cut(s)	564
Ksp22I	TGATCA	2 cut(s)	517, 625
Kzo9I	GATC	3 cut(s)	358, 517, 625
Lsp1109I	GCAGC	7 cut(s)	32, 49, 229, 553, 565, 568, 595
LweI	GCATC	2 cut(s)	49, 799
MaeI	CTAG	1 cut(s)	356
MaeIII	GTNAC	1 cut(s)	736
MalI	GATC	3 cut(s)	360, 519, 627
MboI	GATC	3 cut(s)	358, 517, 625
MboII	GAAGA	4 cut(s)	65, 438, 790, 845
MhlI	GDGCHC	1 cut(s)	828
MluCI	AATT	2 cut(s)	321, 762
MlyI	GAGTC	1 cut(s)	646
MmeI	TCCRAC	1 cut(s)	463
MnlI	CCTC	7 cut(s)	19, 24, 81, 100, 384, 728, 789
MroXI	GAANNNNTTC	1 cut(s)	442
MslI	CAYNNNNRTG	3 cut(s)	408, 548, 680
MspA1I	CMGCKG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	710
MvaI	CCWGG	1 cut(s)	710
MvnI	CGCG	1 cut(s)	636
MwoI	GCNNNNNNNGC	4 cut(s)	26, 278, 605, 617
NcoI	CCATGG	1 cut(s)	675
NdeII	GATC	3 cut(s)	358, 517, 625
NlaIII	CATG	6 cut(s)	345, 407, 476, 671, 679, 858
NmuCI	GTSAC	1 cut(s)	736
NspI	RCATGY	2 cut(s)	345, 671
OliI	CACNNNNGTG	1 cut(s)	548
PaeR7I	CTCGAG	1 cut(s)	793
PceI	AGGCCT	2 cut(s)	29, 717
PciI	ACATGT	2 cut(s)	341, 667
PdmI	GAANNNNTTC	1 cut(s)	442
PfeI	GAWTC	2 cut(s)	150, 705
PfoI	TCCNGGA	1 cut(s)	708
PkrI	GCNGC	7 cut(s)	22, 64, 244, 555, 558, 568, 610
PleI	GAGTC	1 cut(s)	646
PpsI	GAGTC	1 cut(s)	646
PscI	ACATGT	2 cut(s)	341, 667
Psp124BI	GAGCTC	1 cut(s)	828
Psp6I	CCWGG	1 cut(s)	708
PspFI	CCCAGC	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	708
PspPI	GGNCC	1 cut(s)	847
PstI	CTGCAG	1 cut(s)	22
PvuII	CAGCTG	1 cut(s)	23
RseI	CAYNNNNRTG	3 cut(s)	408, 548, 680
SacI	GAGCTC	1 cut(s)	828
SatI	GCNGC	7 cut(s)	21, 63, 243, 554, 557, 567, 609
Sau3AI	GATC	3 cut(s)	358, 517, 625
Sau96I	GGNCC	1 cut(s)	847
SchI	GAGTC	1 cut(s)	646
ScrFI	CCNGG	1 cut(s)	710
SduI	GDGCHC	1 cut(s)	828
SfaNI	GCATC	2 cut(s)	49, 799
SfcI	CTRYAG	1 cut(s)	18
Sfr274I	CTCGAG	1 cut(s)	793
SlaI	CTCGAG	1 cut(s)	793
SmiMI	CAYNNNNRTG	3 cut(s)	408, 548, 680
SmlI	CTYRAG	1 cut(s)	793
SmoI	CTYRAG	1 cut(s)	793
Sse9I	AATT	2 cut(s)	321, 762
SseBI	AGGCCT	2 cut(s)	29, 717
SspMI	CTAG	1 cut(s)	356
SstI	GAGCTC	1 cut(s)	828
StuI	AGGCCT	2 cut(s)	29, 717
StyD4I	CCNGG	1 cut(s)	708
StyI	CCWWGG	2 cut(s)	155, 675
TaaI	ACNGT	2 cut(s)	481, 550
TaqI	TCGA	1 cut(s)	794
TasI	AATT	2 cut(s)	321, 762
TfiI	GAWTC	2 cut(s)	150, 705
TseFI	GTSAC	1 cut(s)	736
TseI	GCWGC	7 cut(s)	20, 62, 242, 553, 556, 566, 608
Tsp45I	GTSAC	1 cut(s)	736
TspDTI	ATGAA	3 cut(s)	392, 529, 843
XceI	RCATGY	2 cut(s)	345, 671
XhoI	CTCGAG	1 cut(s)	793
XmnI	GAANNNNTTC	1 cut(s)	442
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.