Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009056

Physical Location & Seq

Genomic Coordinates Reverse (-)

7007801 .. 7010745

Gene Structure 2945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G127500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGAGAATATTGTTCTTTTTCAGAAAATCCTGGTTGTTCTGTTCACTATTGCCTTCTTTTGGAAGCTTGTAAAATACATGTGGAGTTTCTTGAGCATGGAGAAGGAGCCTGTGACTGTATTGGTTACTGGTGCTGCAGGGCAAATAGGCTATGCTATTGTTCCAATGATTGCTAGGGGGGCCATGCTTGGCCCTGAGCAGCCTGTAATTCTTCACATGCTTGATATTGAACCTGCAGCTGAGTCCTTGAATGGGGTGAAAATGGAATTGATTGATGCTGCCTTTCCTCTTCTCAGAGGTGTTGTTGCTACAACAGATATCCAGGAAGCTTGTAAGGGTGTCAATATTGCTGTTATGGTTGGTGGATTCCCACGGAAGGAAGGTATGGAAAGAAAGGATGTGATGTCGAAAAATGTATCGATTTACAAGGCTCAAGCTTCAGCGTTAGAAAAGAATGCTGCTGCAGATGTCAAGGTGCTGGTGGTTGCCAACCCAGCAAACACTAATGCGCTTATCTTGAAAGAATTTGCACCTTCAATCCCAGAGAAAAACATCACATGCCTTACAAGACTGGATCACAACAGGGCATTAGGACAAATCTCTGAGAAGCTAAATGTTCACGTTGGTGATGTGAAGAATGTTATCATCTGGGGCAATCACTCTTCAACTCAGTATCCTGATGTCAACCATGCAACTGTCACCGTCAACGGTGGAGATAAACCTGTCAGAGAACTTGTGGCTAATGATCAATGGTTGAATACCGAGTTCATCACCACGGTGCAGCAGCGTGGTGCAGCCATTATTAAGGCCAGGAAGCTATCAAGTGCACTGTCTGCTGCAAGTTCTGCTTGTGATCATATACGTGATTGGGTCCTCGGGACTCCTAAGGGTTCATGGGTTTCCATGGGTGTGTATTCCGATGGCTCTTATGGAATCCAGCCAGGCCTCGTATACTCTTTCCCAGTTACATGTGAAAAAGGACAATGGTCAATTGTGCAGGGGCTCAAGATTGATGAGTTTTCGAGGGGGAAGCTGGATGCAACTGCACAAGAGCTCATTGAGGAGAAATCCTTGGCCCATTCATGTCTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006107 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016999 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019752 GO:0030060 GO:0034641 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0045333 GO:0046483 GO:0046496 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04964 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map04964

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

365

Amino Acids

39.62

Weight (kDa)

6.67

Isoelectric Point (pI)

32.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56720
fragaria_vesca	FvH4_3g14020 FvH4_3g14020 FvH4_3g14020
malus_domestica	MD05G1238800.v1.1 MD10G1216900.v1.1
prunus_persica	Prupe.4G127500_v2.0.a1 Prupe.4G127500_v2.0.a1
pyrus_communis	pycom05g21480 pycom10g18290
rosa_chinensis	RchiOBHm_Chr5g0023331
rosa_laevigata	RLG00000032714
rosa_multiflora	Rmu_sc0004693.1_g000004 Rmu_sc0009954.1_g000015
rosa_roxburghii	Rroxscaffold_1G00056000
rosa_rugosa	Rorug05G0078400 Rorug05G0078500
rosa_samantha	Rh5AG165000 Rh5BG164500 Rh5CG179400 Rh5DG166000
rosa_wichuraiana	Rw5G014870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	241
AccI	GTMKAC	1 cut(s)	951
AclWI	GGATC	1 cut(s)	582
AcsI	RAATTY	1 cut(s)	524
AcuI	CTGAAG	1 cut(s)	423
AfiI	CCNNNNNNNGG	3 cut(s)	60, 252, 376
AflIII	ACRYGT	2 cut(s)	78, 968
AgsI	TTSAA	6 cut(s)	230, 250, 520, 537, 666, 757
AjnI	CCWGG	4 cut(s)	30, 321, 809, 940
AleI	CACNNNNGTG	2 cut(s)	624, 776
AluBI	AGCT	8 cut(s)	67, 239, 329, 437, 610, 817, 1033, 1054
AluI	AGCT	8 cut(s)	67, 239, 329, 437, 610, 817, 1033, 1054
Alw21I	GWGCWC	2 cut(s)	829, 1056
Alw26I	GTCTC	1 cut(s)	1091
Alw44I	GTGCAC	1 cut(s)	825
AlwI	GGATC	1 cut(s)	582
Ama87I	CYCGRG	1 cut(s)	875
AoxI	GGCC	5 cut(s)	180, 190, 807, 943, 1074
ApaLI	GTGCAC	1 cut(s)	825
ApoI	RAATTY	1 cut(s)	524
AspLEI	GCGC	1 cut(s)	511
AspS9I	GGNCC	4 cut(s)	180, 191, 871, 1075
AsuHPI	GGTGA	4 cut(s)	268, 638, 691, 763
AvaI	CYCGRG	1 cut(s)	875
AvaII	GGWCC	1 cut(s)	871
AxyI	CCTNAGG	1 cut(s)	885
BaeGI	GKGCMC	1 cut(s)	829
BanII	GRGCYC	2 cut(s)	1005, 1056
Bbv12I	GWGCWC	2 cut(s)	829, 1056
BccI	CCATC	1 cut(s)	914
BciT130I	CCWGG	4 cut(s)	32, 323, 811, 942
BciVI	GTATCC	1 cut(s)	684
BclI	TGATCA	2 cut(s)	745, 853
BcoDI	GTCTC	1 cut(s)	1091
BfaI	CTAG	1 cut(s)	174
BfmI	CTRYAG	3 cut(s)	135, 234, 462
BfuAI	ACCTGC	1 cut(s)	241
BfuI	GTATCC	1 cut(s)	684
Bme1390I	CCNGG	4 cut(s)	32, 323, 811, 942
Bme18I	GGWCC	1 cut(s)	871
BmeT110I	CYCGRG	1 cut(s)	875
BmgT120I	GGNCC	4 cut(s)	180, 191, 871, 1075
BmiI	GGNNCC	3 cut(s)	108, 181, 872
BmrFI	CCNGG	4 cut(s)	32, 323, 811, 942
BmrI	ACTGGG	1 cut(s)	956
BmsI	GCATC	2 cut(s)	265, 1027
BmuI	ACTGGG	1 cut(s)	956
BoxI	GACNNNNGTC	1 cut(s)	985
Bpu10I	CCTNAGC	1 cut(s)	195
BpuEI	CTTGAG	3 cut(s)	112, 417, 989
Bsa29I	ATCGAT	1 cut(s)	419
BsaAI	YACGTR	1 cut(s)	863
BsaJI	CCNNGG	5 cut(s)	371, 774, 874, 903, 1071
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 252, 376
Bse1I	ACTGG	3 cut(s)	133, 576, 962
Bse21I	CCTNAGG	1 cut(s)	885
BseBI	CCWGG	4 cut(s)	32, 323, 811, 942
BseCI	ATCGAT	1 cut(s)	419
BseDI	CCNNGG	5 cut(s)	371, 774, 874, 903, 1071
BseGI	GGATG	2 cut(s)	403, 1042
BseLI	CCNNNNNNNGG	3 cut(s)	60, 252, 376
BseMII	CTCAG	5 cut(s)	186, 231, 307, 594, 683
BseNI	ACTGG	3 cut(s)	133, 576, 962
BseRI	GAGGAG	1 cut(s)	1076
BseSI	GKGCMC	1 cut(s)	829
BseYI	CCCAGC	1 cut(s)	493
BsgI	GTGCAG	4 cut(s)	800, 813, 1016, 1029
BshFI	GGCC	5 cut(s)	182, 192, 809, 945, 1076
BshVI	ATCGAT	1 cut(s)	419
BsiHKAI	GWGCWC	2 cut(s)	829, 1056
BsiHKCI	CYCGRG	1 cut(s)	875
BslFI	GGGAC	1 cut(s)	892
BslI	CCNNNNNNNGG	3 cut(s)	60, 252, 376
BsmAI	GTCTC	1 cut(s)	1091
BsmFI	GGGAC	1 cut(s)	892
BsmI	GAATGC	1 cut(s)	460
BsnI	GGCC	5 cut(s)	182, 192, 809, 945, 1076
BsoBI	CYCGRG	1 cut(s)	875
Bsp1286I	GDGCHC	3 cut(s)	829, 1005, 1056
Bsp143I	GATC	3 cut(s)	574, 745, 853
Bsp19I	CCATGG	1 cut(s)	903
BspANI	GGCC	5 cut(s)	182, 192, 809, 945, 1076
BspCNI	CTCAG	5 cut(s)	187, 232, 306, 595, 682
BspDI	ATCGAT	1 cut(s)	419
BspLI	GGNNCC	3 cut(s)	108, 181, 872
BspMAI	CTGCAG	3 cut(s)	139, 238, 466
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	582
BsrI	ACTGG	3 cut(s)	133, 576, 962
BssECI	CCNNGG	5 cut(s)	371, 774, 874, 903, 1071
BssMI	GATC	3 cut(s)	574, 745, 853
BssNAI	GTATAC	1 cut(s)	952
BssT1I	CCWWGG	2 cut(s)	903, 1071
Bst1107I	GTATAC	1 cut(s)	952
Bst2UI	CCWGG	4 cut(s)	32, 323, 811, 942
Bst4CI	ACNGT	6 cut(s)	118, 697, 703, 710, 778, 831
Bst6I	CTCTTC	2 cut(s)	294, 667
BstAPI	GCANNNNNTGC	2 cut(s)	833, 845
BstBAI	YACGTR	1 cut(s)	863
BstDEI	CTNAG	6 cut(s)	195, 240, 293, 603, 669, 885
BstDSI	CCRYGG	3 cut(s)	371, 774, 903
BstF5I	GGATG	2 cut(s)	403, 1042
BstHHI	GCGC	1 cut(s)	511
BstKTI	GATC	3 cut(s)	577, 748, 856
BstMAI	GTCTC	1 cut(s)	1091
BstMBI	GATC	3 cut(s)	574, 745, 853
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 494, 833, 845
BstNI	CCWGG	4 cut(s)	32, 323, 811, 942
BstNSI	RCATGY	4 cut(s)	82, 220, 561, 972
BstPAI	GACNNNNGTC	1 cut(s)	985
BstSCI	CCNGG	4 cut(s)	30, 321, 809, 940
BstSFI	CTRYAG	3 cut(s)	135, 234, 462
BstSLI	GKGCMC	1 cut(s)	829
BstZ17I	GTATAC	1 cut(s)	952
Bsu15I	ATCGAT	1 cut(s)	419
Bsu36I	CCTNAGG	1 cut(s)	885
BsuI	GTATCC	1 cut(s)	684
BsuRI	GGCC	5 cut(s)	182, 192, 809, 945, 1076
BsuTUI	ATCGAT	1 cut(s)	419
BtgI	CCRYGG	3 cut(s)	371, 774, 903
BtsCI	GGATG	2 cut(s)	403, 1042
BtsIMutI	CAGTG	1 cut(s)	827
BveI	ACCTGC	1 cut(s)	241
CfoI	GCGC	1 cut(s)	511
Cfr13I	GGNCC	4 cut(s)	180, 191, 871, 1075
ClaI	ATCGAT	1 cut(s)	419
DdeI	CTNAG	6 cut(s)	195, 240, 293, 603, 669, 885
DpnI	GATC	3 cut(s)	576, 747, 855
DpnII	GATC	3 cut(s)	574, 745, 853
Eam1104I	CTCTTC	2 cut(s)	294, 667
EarI	CTCTTC	2 cut(s)	294, 667
Ecl136II	GAGCTC	1 cut(s)	1054
Eco130I	CCWWGG	2 cut(s)	903, 1071
Eco147I	AGGCCT	1 cut(s)	945
Eco24I	GRGCYC	2 cut(s)	1005, 1056
Eco32I	GATATC	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	871
Eco53kI	GAGCTC	1 cut(s)	1054
Eco57I	CTGAAG	1 cut(s)	423
Eco81I	CCTNAGG	1 cut(s)	885
Eco88I	CYCGRG	1 cut(s)	875
EcoICRI	GAGCTC	1 cut(s)	1054
EcoO109I	RGGNCCY	1 cut(s)	871
EcoRII	CCWGG	4 cut(s)	30, 321, 809, 940
EcoRV	GATATC	1 cut(s)	319
EcoT14I	CCWWGG	2 cut(s)	903, 1071
EcoT38I	GRGCYC	2 cut(s)	1005, 1056
ErhI	CCWWGG	2 cut(s)	903, 1071
FalI	AAGNNNNNCTT	2 cut(s)	832, 864
FaqI	GGGAC	1 cut(s)	892
FbaI	TGATCA	2 cut(s)	745, 853
FblI	GTMKAC	1 cut(s)	951
FokI	GGATG	2 cut(s)	410, 1049
FriOI	GRGCYC	2 cut(s)	1005, 1056
FspBI	CTAG	1 cut(s)	174
GlaI	GCGC	1 cut(s)	510
GsaI	CCCAGC	1 cut(s)	497
HaeIII	GGCC	5 cut(s)	182, 192, 809, 945, 1076
HhaI	GCGC	1 cut(s)	511
Hin6I	GCGC	1 cut(s)	509
HinP1I	GCGC	1 cut(s)	509
HincII	GTYRAC	2 cut(s)	685, 706
HindII	GTYRAC	2 cut(s)	685, 706
HindIII	AAGCTT	3 cut(s)	65, 327, 435
HinfI	GANTC	4 cut(s)	242, 366, 880, 933
HphI	GGTGA	4 cut(s)	268, 638, 691, 763
Hpy166II	GTNNAC	6 cut(s)	45, 619, 685, 706, 827, 952
Hpy188I	TCNGA	5 cut(s)	24, 296, 604, 728, 919
Hpy188III	TCNNGA	5 cut(s)	91, 517, 677, 877, 1006
Hpy8I	GTNNAC	6 cut(s)	45, 619, 685, 706, 827, 952
HpyAV	CCTTC	5 cut(s)	64, 97, 370, 374, 543
HpyCH4III	ACNGT	6 cut(s)	118, 697, 703, 710, 778, 831
HpyCH4IV	ACGT	2 cut(s)	621, 862
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 494, 833, 845
HpyF3I	CTNAG	6 cut(s)	195, 240, 293, 603, 669, 885
HpySE526I	ACGT	2 cut(s)	621, 862
HspAI	GCGC	1 cut(s)	509
Ksp22I	TGATCA	2 cut(s)	745, 853
Kzo9I	GATC	3 cut(s)	574, 745, 853
LmnI	GCTCC	1 cut(s)	106
LweI	GCATC	2 cut(s)	265, 1027
MaeI	CTAG	1 cut(s)	174
MaeII	ACGT	2 cut(s)	621, 862
MaeIII	GTNAC	4 cut(s)	112, 124, 697, 964
MalI	GATC	3 cut(s)	576, 747, 855
MboI	GATC	3 cut(s)	574, 745, 853
MboII	GAAGA	4 cut(s)	203, 281, 646, 654
MfeI	CAATTG	2 cut(s)	990, 1090
MhlI	GDGCHC	3 cut(s)	829, 1005, 1056
MluCI	AATT	5 cut(s)	207, 266, 524, 990, 1090
MlyI	GAGTC	2 cut(s)	251, 874
MnlI	CCTC	6 cut(s)	290, 297, 884, 956, 1017, 1054
MseI	TTAA	1 cut(s)	804
MslI	CAYNNNNRTG	4 cut(s)	624, 776, 861, 908
MspA1I	CMGCKG	1 cut(s)	239
MspR9I	CCNGG	4 cut(s)	32, 323, 811, 942
MunI	CAATTG	2 cut(s)	990, 1090
Mva1269I	GAATGC	1 cut(s)	460
MvaI	CCWGG	4 cut(s)	32, 323, 811, 942
MwoI	GCNNNNNNNGC	4 cut(s)	179, 494, 833, 845
NcoI	CCATGG	1 cut(s)	903
NdeII	GATC	3 cut(s)	574, 745, 853
NlaIV	GGNNCC	3 cut(s)	108, 181, 872
NmuCI	GTSAC	2 cut(s)	112, 697
NspI	RCATGY	4 cut(s)	82, 220, 561, 972
OliI	CACNNNNGTG	2 cut(s)	624, 776
PceI	AGGCCT	1 cut(s)	945
PciI	ACATGT	2 cut(s)	78, 968
PctI	GAATGC	1 cut(s)	460
PfeI	GAWTC	2 cut(s)	366, 933
PfoI	TCCNGGA	1 cut(s)	321
PleI	GAGTC	2 cut(s)	250, 874
PpsI	GAGTC	2 cut(s)	250, 874
Ppu21I	YACGTR	1 cut(s)	863
PpuMI	RGGWCCY	1 cut(s)	871
PscI	ACATGT	2 cut(s)	78, 968
PshAI	GACNNNNGTC	1 cut(s)	985
Psp124BI	GAGCTC	1 cut(s)	1056
Psp5II	RGGWCCY	1 cut(s)	871
Psp6I	CCWGG	4 cut(s)	30, 321, 809, 940
PspFI	CCCAGC	1 cut(s)	493
PspGI	CCWGG	4 cut(s)	30, 321, 809, 940
PspN4I	GGNNCC	3 cut(s)	108, 181, 872
PspPI	GGNCC	4 cut(s)	180, 191, 871, 1075
PspPPI	RGGWCCY	1 cut(s)	871
PstI	CTGCAG	3 cut(s)	139, 238, 466
PvuII	CAGCTG	1 cut(s)	239
RseI	CAYNNNNRTG	4 cut(s)	624, 776, 861, 908
SacI	GAGCTC	1 cut(s)	1056
SaqAI	TTAA	1 cut(s)	804
Sau3AI	GATC	3 cut(s)	574, 745, 853
Sau96I	GGNCC	4 cut(s)	180, 191, 871, 1075
SchI	GAGTC	2 cut(s)	251, 874
ScrFI	CCNGG	4 cut(s)	32, 323, 811, 942
SduI	GDGCHC	3 cut(s)	829, 1005, 1056
SfaNI	GCATC	2 cut(s)	265, 1027
SfcI	CTRYAG	3 cut(s)	135, 234, 462
SinI	GGWCC	1 cut(s)	871
SmiMI	CAYNNNNRTG	4 cut(s)	624, 776, 861, 908
SmlI	CTYRAG	3 cut(s)	91, 432, 1004
SmoI	CTYRAG	3 cut(s)	91, 432, 1004
Sse9I	AATT	5 cut(s)	207, 266, 524, 990, 1090
SseBI	AGGCCT	1 cut(s)	945
SspI	AATATT	2 cut(s)	10, 346
SspMI	CTAG	1 cut(s)	174
SstI	GAGCTC	1 cut(s)	1056
StuI	AGGCCT	1 cut(s)	945
StyD4I	CCNGG	4 cut(s)	30, 321, 809, 940
StyI	CCWWGG	2 cut(s)	903, 1071
TaaI	ACNGT	6 cut(s)	118, 697, 703, 710, 778, 831
TaiI	ACGT	2 cut(s)	624, 865
TaqI	TCGA	3 cut(s)	407, 419, 1022
TasI	AATT	5 cut(s)	207, 266, 524, 990, 1090
TfiI	GAWTC	2 cut(s)	366, 933
Tru1I	TTAA	1 cut(s)	804
Tru9I	TTAA	1 cut(s)	804
TscAI	CASTG	1 cut(s)	834
TseFI	GTSAC	2 cut(s)	112, 697
Tsp45I	GTSAC	2 cut(s)	112, 697
TspDTI	ATGAA	3 cut(s)	757, 882, 1071
TspGWI	ACGGA	1 cut(s)	388
TspRI	CASTG	1 cut(s)	834
VneI	GTGCAC	1 cut(s)	825
VpaK11BI	GGWCC	1 cut(s)	871
XapI	RAATTY	1 cut(s)	524
XceI	RCATGY	4 cut(s)	82, 220, 561, 972
XmiI	GTMKAC	1 cut(s)	951
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.