AT5G56840
MYB Family

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014417
Physical Location & Seq
Forward (+)
22980638 .. 22982425
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G56840.1

Sequence Viewer

Length: 702 bp
ATGGGCAGAAGATGCTCACACTGTGGAAACGTAGGACATAACTCAAGAACATGTTCTTCTTACCAAACAAGAGTAGTTAGGCTCTTTGGTGTTCATCTAGACACCACAAGCTCTTCTCCGCCGCCTCCTCCTCCTCCCTCGATTTTGGCCGCTGCAATAAAGAAAAGTTTCAGCATGGATTGCTTGCCGGCATGTTCCTCCTCTTCCTCTTCCTTTGCTGGTTATCTCTCCGATGGTCTCGCCCATAAAACACCTGACCGCAAAAAAGGGGTTCCATGGACGGCGGAAGAGCACCGGACGTTTCTAATTGGATTAGAAAAGCTTGGAAAAGGAGATTGGAGAGGAATCTCTAGAAACTTCGTCGTCACAAAATCCCCGACACAAGTGGCAAGTCATGCTCAAAAATACTTTCTCCGGCAAACTACCACTCTCCATCACAAGAGACGCCGCACCAGCCTCTTTGATATGGTTTCGGCCGGCAATGTTGAAGAAAATAGTACTACTAAGAGGATATGTAATGATCATATTGGGTCGAGCTCAAAGGTTGTTTGGAAACAAGGATTACTCAATCCTCGTCTTGGATATCCAGATCCGAAAGTATCAGTATCCGGCTCGGGTAACTCCGGTGGACTCGATCTTGAGCTGAAGCTTGCGTCCATTCAATCTCCTGAATCGAATATTAGACCTATTAGCGTTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

233

Amino Acids

25.32

Weight (kDa)

9.91

Isoelectric Point (pI)

55.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 91 - 137 4.2e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014417)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56840
fragaria_vesca FvH4_1g07170 FvH4_1g07170
malus_domestica MD02G1076300.v1.1 MD15G1204700.v1.1
prunus_persica Prupe.7G212300_v2.0.a1
pyrus_communis pycom02g06060 pycom15g18170
rosa_chinensis RchiOBHm_Chr2g0093071
rosa_laevigata RLG00000016365
rosa_roxburghii Rroxscaffold_2G00148540
rosa_rugosa Rorug02G0032200
rosa_samantha Rh2AG077700 Rh2BG079100 Rh2CG081500 Rh2DG076600
rosa_wichuraiana Rw2G006850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 119, 122, 150, 259, 284, 448
AclWI GGATC 1 cut(s) 584
AcoI YGGCCR 2 cut(s) 147, 474
AcuI CTGAAG 1 cut(s) 665
AcyI GRCGYC 1 cut(s) 445
AdeI CACNNNGTG 1 cut(s) 23
AfaI GTAC 1 cut(s) 499
AfiI CCNNNNNNNGG 1 cut(s) 578
AflIII ACRYGT 1 cut(s) 50
AgsI TTSAA 2 cut(s) 488, 662
AjuI GAANNNNNNNTTGG 2 cut(s) 319, 351
AluBI AGCT 5 cut(s) 111, 322, 537, 643, 649
AluI AGCT 5 cut(s) 111, 322, 537, 643, 649
Alw21I GWGCWC 2 cut(s) 294, 539
Alw26I GTCTC 2 cut(s) 242, 436
AlwI GGATC 1 cut(s) 584
Ama87I CYCGRG 1 cut(s) 613
AoxI GGCC 2 cut(s) 147, 474
ApeKI GCWGC 1 cut(s) 152
Asp700I GAANNNNTTC 2 cut(s) 52, 167
AvaI CYCGRG 1 cut(s) 613
BanII GRGCYC 1 cut(s) 539
Bbv12I GWGCWC 2 cut(s) 294, 539
BbvI GCAGC 1 cut(s) 139
BccI CCATC 2 cut(s) 227, 441
BceAI ACGGC 1 cut(s) 297
BciVI GTATCC 1 cut(s) 616
BclI TGATCA 1 cut(s) 520
BcoDI GTCTC 2 cut(s) 242, 436
BfaI CTAG 2 cut(s) 98, 351
BfuI GTATCC 1 cut(s) 616
BisI GCNGC 4 cut(s) 122, 150, 153, 448
BlsI GCNGC 4 cut(s) 123, 151, 154, 449
BmcAI AGTACT 1 cut(s) 499
BmeT110I CYCGRG 1 cut(s) 613
BmiI GGNNCC 1 cut(s) 273
BmsI GCATC 1 cut(s) 2
BpuEI CTTGAG 2 cut(s) 28, 659
BsaAI YACGTR 1 cut(s) 699
BsaHI GRCGYC 1 cut(s) 445
BsaI GGTCTC 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 275
BsaWI WCCGGW 2 cut(s) 294, 623
Bsc4I CCNNNNNNNGG 1 cut(s) 578
Bse118I RCCGGY 2 cut(s) 187, 476
Bse3DI GCAATG 1 cut(s) 487
BseDI CCNNGG 1 cut(s) 275
BseLI CCNNNNNNNGG 1 cut(s) 578
BseMI GCAATG 1 cut(s) 487
BseRI GAGGAG 4 cut(s) 117, 120, 123, 190
BseX3I CGGCCG 1 cut(s) 474
BseXI GCAGC 1 cut(s) 139
Bsh1285I CGRYCG 1 cut(s) 477
BshFI GGCC 2 cut(s) 149, 476
BsiEI CGRYCG 1 cut(s) 477
BsiHKAI GWGCWC 2 cut(s) 294, 539
BsiHKCI CYCGRG 1 cut(s) 613
BsiSI CCGG 6 cut(s) 188, 295, 415, 477, 609, 624
BslI CCNNNNNNNGG 1 cut(s) 578
BsmAI GTCTC 2 cut(s) 242, 436
BsmBI CGTCTC 1 cut(s) 436
BsnI GGCC 2 cut(s) 149, 476
Bso31I GGTCTC 1 cut(s) 242
BsoBI CYCGRG 1 cut(s) 613
Bsp1286I GDGCHC 2 cut(s) 294, 539
Bsp143I GATC 3 cut(s) 520, 589, 634
Bsp19I CCATGG 1 cut(s) 275
BspACI CCGC 6 cut(s) 119, 122, 150, 259, 284, 448
BspANI GGCC 2 cut(s) 149, 476
BspLI GGNNCC 1 cut(s) 273
BspPI GGATC 1 cut(s) 584
BspQI GCTCTTC 2 cut(s) 118, 282
BspTNI GGTCTC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 487
BsrFI RCCGGY 2 cut(s) 187, 476
BssAI RCCGGY 2 cut(s) 187, 476
BssECI CCNNGG 1 cut(s) 275
BssMI GATC 3 cut(s) 520, 589, 634
BssNI GRCGYC 1 cut(s) 445
BssT1I CCWWGG 1 cut(s) 275
Bst4CI ACNGT 1 cut(s) 23
Bst6I CTCTTC 4 cut(s) 118, 208, 214, 282
BstACI GRCGYC 1 cut(s) 445
BstAPI GCANNNNNTGC 3 cut(s) 12, 180, 395
BstBAI YACGTR 1 cut(s) 699
BstC8I GCNNGC 4 cut(s) 185, 189, 478, 651
BstDEI CTNAG 1 cut(s) 504
BstDSI CCRYGG 1 cut(s) 275
BstKTI GATC 3 cut(s) 523, 592, 637
BstMAI GTCTC 2 cut(s) 242, 436
BstMBI GATC 3 cut(s) 520, 589, 634
BstMCI CGRYCG 1 cut(s) 477
BstMWI GCNNNNNNNGC 4 cut(s) 12, 180, 395, 453
BstNSI RCATGY 2 cut(s) 54, 195
BstV1I GCAGC 1 cut(s) 139
BstX2I RGATCY 1 cut(s) 589
BstYI RGATCY 1 cut(s) 589
BstZI CGGCCG 1 cut(s) 474
BsuI GTATCC 1 cut(s) 616
BsuRI GGCC 2 cut(s) 149, 476
BtgI CCRYGG 1 cut(s) 275
BtsIMutI CAGTG 1 cut(s) 19
Cac8I GCNNGC 4 cut(s) 185, 189, 478, 651
Cfr10I RCCGGY 2 cut(s) 187, 476
CseI GACGC 2 cut(s) 453, 642
Csp6I GTAC 1 cut(s) 498
CviAII CATG 5 cut(s) 51, 175, 192, 276, 395
CviQI GTAC 1 cut(s) 498
DdeI CTNAG 1 cut(s) 504
DpnI GATC 3 cut(s) 522, 591, 636
DpnII GATC 3 cut(s) 520, 589, 634
DraIII CACNNNGTG 1 cut(s) 23
EaeI YGGCCR 2 cut(s) 147, 474
EagI CGGCCG 1 cut(s) 474
Eam1104I CTCTTC 4 cut(s) 118, 208, 214, 282
EarI CTCTTC 4 cut(s) 118, 208, 214, 282
EciI GGCGGA 2 cut(s) 108, 299
Ecl136II GAGCTC 1 cut(s) 537
EclXI CGGCCG 1 cut(s) 474
Eco130I CCWWGG 1 cut(s) 275
Eco24I GRGCYC 1 cut(s) 539
Eco31I GGTCTC 1 cut(s) 242
Eco32I GATATC 1 cut(s) 584
Eco52I CGGCCG 1 cut(s) 474
Eco53kI GAGCTC 1 cut(s) 537
Eco57I CTGAAG 1 cut(s) 665
Eco88I CYCGRG 1 cut(s) 613
EcoICRI GAGCTC 1 cut(s) 537
EcoRV GATATC 1 cut(s) 584
EcoT14I CCWWGG 1 cut(s) 275
EcoT38I GRGCYC 1 cut(s) 539
ErhI CCWWGG 1 cut(s) 275
Esp3I CGTCTC 1 cut(s) 436
FaeI CATG 5 cut(s) 54, 178, 195, 279, 398
FatI CATG 5 cut(s) 50, 174, 191, 275, 394
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 4 cut(s) 122, 150, 153, 448
FriOI GRGCYC 1 cut(s) 539
Fsp4HI GCNGC 4 cut(s) 122, 150, 153, 448
FspBI CTAG 2 cut(s) 98, 351
GluI GCNGC 4 cut(s) 122, 150, 153, 448
HaeIII GGCC 2 cut(s) 149, 476
HapII CCGG 6 cut(s) 188, 295, 415, 477, 609, 624
HgaI GACGC 2 cut(s) 453, 642
Hin1I GRCGYC 1 cut(s) 445
Hin1II CATG 5 cut(s) 54, 178, 195, 279, 398
HindIII AAGCTT 2 cut(s) 320, 647
HinfI GANTC 3 cut(s) 345, 630, 671
HpaII CCGG 6 cut(s) 188, 295, 415, 477, 609, 624
Hpy166II GTNNAC 1 cut(s) 629
Hpy188I TCNGA 2 cut(s) 232, 594
Hpy188III TCNNGA 6 cut(s) 45, 98, 351, 587, 638, 668
Hpy8I GTNNAC 1 cut(s) 629
Hpy99I CGWCG 1 cut(s) 365
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4IV ACGT 3 cut(s) 30, 299, 698
HpyCH4V TGCA 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 180, 395, 453
HpyF3I CTNAG 1 cut(s) 504
HpySE526I ACGT 3 cut(s) 30, 299, 698
Hsp92I GRCGYC 1 cut(s) 445
Hsp92II CATG 5 cut(s) 54, 178, 195, 279, 398
KroI GCCGGC 2 cut(s) 187, 476
KroNI GCCGGC 2 cut(s) 189, 478
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 3 cut(s) 520, 589, 634
LguI GCTCTTC 2 cut(s) 118, 282
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 1 cut(s) 2
MaeI CTAG 2 cut(s) 98, 351
MaeII ACGT 3 cut(s) 30, 299, 698
MaeIII GTNAC 3 cut(s) 364, 617, 694
MalI GATC 3 cut(s) 522, 591, 636
MboI GATC 3 cut(s) 520, 589, 634
MboII GAAGA 7 cut(s) 21, 48, 105, 195, 201, 299, 500
MflI RGATCY 1 cut(s) 589
MhlI GDGCHC 2 cut(s) 294, 539
MluCI AATT 1 cut(s) 306
MlyI GAGTC 1 cut(s) 624
MroNI GCCGGC 2 cut(s) 187, 476
MroXI GAANNNNTTC 2 cut(s) 52, 167
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 6 cut(s) 188, 295, 415, 477, 609, 624
MwoI GCNNNNNNNGC 4 cut(s) 12, 180, 395, 453
NaeI GCCGGC 2 cut(s) 189, 478
NcoI CCATGG 1 cut(s) 275
NdeII GATC 3 cut(s) 520, 589, 634
NgoMIV GCCGGC 2 cut(s) 187, 476
NlaIII CATG 5 cut(s) 54, 178, 195, 279, 398
NlaIV GGNNCC 1 cut(s) 273
NmuCI GTSAC 1 cut(s) 364
NspI RCATGY 2 cut(s) 54, 195
PciI ACATGT 1 cut(s) 50
PciSI GCTCTTC 2 cut(s) 118, 282
PdiI GCCGGC 2 cut(s) 189, 478
PdmI GAANNNNTTC 2 cut(s) 52, 167
PfeI GAWTC 2 cut(s) 345, 671
PkrI GCNGC 4 cut(s) 123, 151, 154, 449
PleI GAGTC 1 cut(s) 624
PpsI GAGTC 1 cut(s) 624
Ppu21I YACGTR 1 cut(s) 699
PscI ACATGT 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 539
PspN4I GGNNCC 1 cut(s) 273
PsuI RGATCY 1 cut(s) 589
RsaI GTAC 1 cut(s) 499
RsaNI GTAC 1 cut(s) 498
SacI GAGCTC 1 cut(s) 539
SapI GCTCTTC 2 cut(s) 118, 282
SatI GCNGC 4 cut(s) 122, 150, 153, 448
Sau3AI GATC 3 cut(s) 520, 589, 634
ScaI AGTACT 1 cut(s) 499
SchI GAGTC 1 cut(s) 624
SduI GDGCHC 2 cut(s) 294, 539
SfaNI GCATC 1 cut(s) 2
SmlI CTYRAG 2 cut(s) 43, 638
SmoI CTYRAG 2 cut(s) 43, 638
Sse9I AATT 1 cut(s) 306
SsiI CCGC 6 cut(s) 119, 122, 150, 259, 284, 448
SspI AATATT 1 cut(s) 679
SspMI CTAG 2 cut(s) 98, 351
SstI GAGCTC 1 cut(s) 539
StyI CCWWGG 1 cut(s) 275
TaaI ACNGT 1 cut(s) 23
TaiI ACGT 3 cut(s) 33, 302, 701
TaqI TCGA 4 cut(s) 140, 533, 633, 674
TasI AATT 1 cut(s) 306
TatI WGTACW 1 cut(s) 497
TauI GCSGC 3 cut(s) 124, 152, 450
TfiI GAWTC 2 cut(s) 345, 671
TscAI CASTG 1 cut(s) 26
TseFI GTSAC 1 cut(s) 364
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 364
TspDTI ATGAA 1 cut(s) 83
TspRI CASTG 1 cut(s) 26
XbaI TCTAGA 2 cut(s) 97, 350
XceI RCATGY 2 cut(s) 54, 195
XmnI GAANNNNTTC 2 cut(s) 52, 167
XspI CTAG 2 cut(s) 98, 351
ZrmI AGTACT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.