Prupe.7G212300_v2.0.a1
MYB Family

transcription, DNA-templated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014417
Physical Location & Seq
Reverse (-)
19356959 .. 19358749
1791 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G212300.1

Sequence Viewer

Length: 999 bp
ATGGGCAGAAAGTGCTCACATTGTGGAAACATAGGCCACAATTCAAGGACCTGCACGAATTTCAGAGGGACTGGTACAAGTTTTAGTGTTGGTCATGTTGGGGTTAGGCTCTTTGGTGTCCAACTTCATCATCATGATCATCATCATCTCATGATGCCTTCATCATCTAATATGAATCATCATGTTGCCATGTCCATGAAGAAAAGTTTCAGCATGGATTGCTTGCCCACGTCATCGGCCTCATCGTCCTCCCCATCTTCTTCAAGAATTTCTGTGGATGAGAATTCTATTCAGGATAAAGCATCCATCGGCTATCTCTCTGATGGTCTCATATGCCGAGCCCAAGAGAGGAAAAAGGGAGTTCCATGGACAGAAGAGGAGCACCGGACGTTTCTAATCGGTCTCGAGAAGCTTGGAAAGGGTGACTGGAGAGGCATCTCTAGGAACTATGTGACCACAAGAACCCCAACCCAAGTTGCCAGCCATGCTCAGAAGTACTTTCTCAGGCAAGCAACCCTCACCAAGAAGAAACGACGTTCTAGCCTCTTCGACATGTTTGGGAGGAGCAACAATATCAATCTGTCAACTGGTCATCCTGCCAATACCAACACCTCTCATTATAAGCAGCCATTAAGCGATGATCATCAAGTTCTTCCTCCTCAACATAACAATATTATTCATGACAACTCTGGTGCCACGCTGCCTCTGCTTGAACTCGGCACCTCCGTAGCAGCTCAAAATCCAAACTTAGATAATCTAAAACCGGATCACTGCAGTGCTAATCAGCAGCTACCGGTTTGGATTTACGGATTGATCGATTCCCAGATGAAATATTCATCAAACATTGCTGCCTCAAAACCCGGTTCATCAGCATCAGTTGTACCGGATCTAGAGCTCAAGCTTGCCGCGCCAGCTAGTCCTAGTTTGGAACAAAAAAATAAATCTTCCCCATCCCCAGCAGGTCCCCTCCTTAATCTTGGACCAATTAGTGTTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

333

Amino Acids

36.18

Weight (kDa)

9.45

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014417)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56840
fragaria_vesca FvH4_1g07170 FvH4_1g07170
malus_domestica MD02G1076300.v1.1 MD15G1204700.v1.1
prunus_persica Prupe.7G212300_v2.0.a1
pyrus_communis pycom02g06060 pycom15g18170
rosa_chinensis RchiOBHm_Chr2g0093071
rosa_laevigata RLG00000016365
rosa_roxburghii Rroxscaffold_2G00148540
rosa_rugosa Rorug02G0032200
rosa_samantha Rh2AG077700 Rh2BG079100 Rh2CG081500 Rh2DG076600
rosa_wichuraiana Rw2G006850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 621
Acc36I ACCTGC 2 cut(s) 59, 950
AccB1I GGYRCC 2 cut(s) 692, 719
AccII CGCG 1 cut(s) 908
AciI CCGC 1 cut(s) 906
AclWI GGATC 2 cut(s) 774, 894
AcsI RAATTY 3 cut(s) 58, 267, 283
AdeI CACNNNGTG 1 cut(s) 23
AfaI GTAC 3 cut(s) 76, 497, 882
AfiI CCNNNNNNNGG 1 cut(s) 348
AflIII ACRYGT 1 cut(s) 552
AgeI ACCGGT 1 cut(s) 793
AgsI TTSAA 3 cut(s) 45, 264, 713
AjiI CACGTC 1 cut(s) 231
AleI CACNNNNGTG 1 cut(s) 774
AluBI AGCT 6 cut(s) 412, 734, 790, 895, 901, 914
AluI AGCT 6 cut(s) 412, 734, 790, 895, 901, 914
Alw21I GWGCWC 3 cut(s) 17, 384, 897
Alw26I GTCTC 2 cut(s) 332, 407
AlwI GGATC 2 cut(s) 774, 894
Ama87I CYCGRG 1 cut(s) 404
AoxI GGCC 2 cut(s) 34, 237
ApeKI GCWGC 5 cut(s) 625, 700, 731, 787, 848
ApoI RAATTY 3 cut(s) 58, 267, 283
AsiGI ACCGGT 1 cut(s) 793
Asp700I GAANNNNTTC 1 cut(s) 206
AspLEI GCGC 1 cut(s) 910
AspS9I GGNCC 3 cut(s) 48, 962, 980
AsuC2I CCSGG 1 cut(s) 861
AsuHPI GGTGA 2 cut(s) 434, 511
AvaI CYCGRG 1 cut(s) 404
AvaII GGWCC 3 cut(s) 48, 962, 980
BanI GGYRCC 2 cut(s) 692, 719
BanII GRGCYC 2 cut(s) 343, 897
Bbv12I GWGCWC 3 cut(s) 17, 384, 897
BbvI GCAGC 5 cut(s) 637, 687, 743, 799, 835
BccI CCATC 4 cut(s) 262, 314, 317, 958
BclI TGATCA 2 cut(s) 136, 640
BcnI CCSGG 1 cut(s) 861
BcoDI GTCTC 2 cut(s) 332, 407
BfaI CTAG 5 cut(s) 441, 540, 890, 915, 921
BfmI CTRYAG 1 cut(s) 772
BfuAI ACCTGC 2 cut(s) 59, 950
BisI GCNGC 6 cut(s) 626, 701, 732, 788, 849, 906
BlsI GCNGC 6 cut(s) 627, 702, 733, 789, 850, 907
BmcAI AGTACT 1 cut(s) 497
Bme1390I CCNGG 1 cut(s) 861
Bme18I GGWCC 3 cut(s) 48, 962, 980
BmeT110I CYCGRG 1 cut(s) 404
BmgBI CACGTC 1 cut(s) 231
BmgT120I GGNCC 3 cut(s) 48, 962, 980
BmiI GGNNCC 3 cut(s) 694, 721, 964
BmrFI CCNGG 1 cut(s) 861
BmsI GCATC 4 cut(s) 144, 311, 444, 881
BpmI CTGGAG 1 cut(s) 448
BpuEI CTTGAG 1 cut(s) 881
BpuMI CCSGG 1 cut(s) 861
Bsa29I ATCGAT 1 cut(s) 816
BsaBI GATNNNNATC 2 cut(s) 141, 642
BsaI GGTCTC 2 cut(s) 332, 407
BsaJI CCNNGG 1 cut(s) 365
BsaWI WCCGGW 4 cut(s) 384, 763, 793, 883
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse118I RCCGGY 1 cut(s) 793
Bse1I ACTGG 3 cut(s) 76, 431, 592
Bse3DI GCAATG 1 cut(s) 843
Bse8I GATNNNNATC 2 cut(s) 141, 642
BseCI ATCGAT 1 cut(s) 816
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 4 cut(s) 283, 302, 592, 950
BseJI GATNNNNATC 2 cut(s) 141, 642
BseLI CCNNNNNNNGG 1 cut(s) 348
BseMI GCAATG 1 cut(s) 843
BseMII CTCAG 2 cut(s) 503, 517
BseNI ACTGG 3 cut(s) 76, 431, 592
BseRI GAGGAG 3 cut(s) 392, 577, 648
BseXI GCAGC 5 cut(s) 637, 687, 743, 799, 835
BseYI CCCAGC 1 cut(s) 955
BsgI GTGCAG 1 cut(s) 37
Bsh1236I CGCG 1 cut(s) 908
BshFI GGCC 2 cut(s) 36, 239
BshNI GGYRCC 2 cut(s) 692, 719
BshTI ACCGGT 1 cut(s) 793
BshVI ATCGAT 1 cut(s) 816
BsiHKAI GWGCWC 3 cut(s) 17, 384, 897
BsiHKCI CYCGRG 1 cut(s) 404
BsiSI CCGG 5 cut(s) 385, 764, 794, 861, 884
BslFI GGGAC 2 cut(s) 82, 948
BslI CCNNNNNNNGG 1 cut(s) 348
BsmAI GTCTC 2 cut(s) 332, 407
BsmFI GGGAC 2 cut(s) 82, 948
BsnI GGCC 2 cut(s) 36, 239
Bso31I GGTCTC 2 cut(s) 332, 407
BsoBI CYCGRG 1 cut(s) 404
Bsp1286I GDGCHC 4 cut(s) 17, 343, 384, 897
Bsp143I GATC 5 cut(s) 136, 640, 766, 813, 886
Bsp19I CCATGG 1 cut(s) 365
BspACI CCGC 1 cut(s) 906
BspANI GGCC 2 cut(s) 36, 239
BspCNI CTCAG 2 cut(s) 502, 516
BspDI ATCGAT 1 cut(s) 816
BspFNI CGCG 1 cut(s) 908
BspHI TCATGA 3 cut(s) 133, 150, 679
BspLI GGNNCC 3 cut(s) 694, 721, 964
BspMAI CTGCAG 1 cut(s) 776
BspMI ACCTGC 2 cut(s) 59, 950
BspPI GGATC 2 cut(s) 774, 894
BspT107I GGYRCC 2 cut(s) 692, 719
BspTNI GGTCTC 2 cut(s) 332, 407
BsrDI GCAATG 1 cut(s) 843
BsrFI RCCGGY 1 cut(s) 793
BsrI ACTGG 3 cut(s) 76, 431, 592
BssAI RCCGGY 1 cut(s) 793
BssECI CCNNGG 1 cut(s) 365
BssMI GATC 5 cut(s) 136, 640, 766, 813, 886
BssT1I CCWWGG 1 cut(s) 365
Bst6I CTCTTC 2 cut(s) 369, 551
BstAPI GCANNNNNTGC 2 cut(s) 12, 219
BstC8I GCNNGC 5 cut(s) 224, 481, 510, 903, 912
BstDEI CTNAG 3 cut(s) 489, 503, 748
BstDSI CCRYGG 1 cut(s) 365
BstF5I GGATG 4 cut(s) 283, 302, 592, 950
BstFNI CGCG 1 cut(s) 908
BstHHI GCGC 1 cut(s) 910
BstKTI GATC 5 cut(s) 139, 643, 769, 816, 889
BstMAI GTCTC 2 cut(s) 332, 407
BstMBI GATC 5 cut(s) 136, 640, 766, 813, 886
BstMWI GCNNNNNNNGC 6 cut(s) 12, 219, 485, 706, 907, 911
BstNSI RCATGY 1 cut(s) 556
BstSCI CCNGG 1 cut(s) 859
BstSFI CTRYAG 1 cut(s) 772
BstUI CGCG 1 cut(s) 908
BstV1I GCAGC 5 cut(s) 637, 687, 743, 799, 835
BstX2I RGATCY 1 cut(s) 886
BstYI RGATCY 1 cut(s) 886
Bsu15I ATCGAT 1 cut(s) 816
BsuRI GGCC 2 cut(s) 36, 239
BsuTUI ATCGAT 1 cut(s) 816
BtgI CCRYGG 1 cut(s) 365
BtgZI GCGATG 1 cut(s) 651
BtrI CACGTC 1 cut(s) 231
BtsCI GGATG 4 cut(s) 283, 302, 592, 950
BtsI GCAGTG 2 cut(s) 769, 781
BtsIMutI CAGTG 2 cut(s) 769, 781
BveI ACCTGC 2 cut(s) 59, 950
Cac8I GCNNGC 5 cut(s) 224, 481, 510, 903, 912
CciI TCATGA 3 cut(s) 133, 150, 679
CfoI GCGC 1 cut(s) 910
Cfr10I RCCGGY 1 cut(s) 793
Cfr13I GGNCC 3 cut(s) 48, 962, 980
ClaI ATCGAT 1 cut(s) 816
Csp6I GTAC 3 cut(s) 75, 496, 881
CspAI ACCGGT 1 cut(s) 793
CviQI GTAC 3 cut(s) 75, 496, 881
DdeI CTNAG 3 cut(s) 489, 503, 748
DpnI GATC 5 cut(s) 138, 642, 768, 815, 888
DpnII GATC 5 cut(s) 136, 640, 766, 813, 886
DraIII CACNNNGTG 1 cut(s) 23
Eam1104I CTCTTC 2 cut(s) 369, 551
EarI CTCTTC 2 cut(s) 369, 551
Ecl136II GAGCTC 1 cut(s) 895
Eco130I CCWWGG 1 cut(s) 365
Eco24I GRGCYC 2 cut(s) 343, 897
Eco31I GGTCTC 2 cut(s) 332, 407
Eco47I GGWCC 3 cut(s) 48, 962, 980
Eco53kI GAGCTC 1 cut(s) 895
Eco88I CYCGRG 1 cut(s) 404
EcoICRI GAGCTC 1 cut(s) 895
EcoO109I RGGNCCY 2 cut(s) 48, 962
EcoRI GAATTC 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 365
EcoT38I GRGCYC 2 cut(s) 343, 897
ErhI CCWWGG 1 cut(s) 365
FaqI GGGAC 2 cut(s) 82, 948
FauNDI CATATG 1 cut(s) 332
FbaI TGATCA 2 cut(s) 136, 640
Fnu4HI GCNGC 6 cut(s) 626, 701, 732, 788, 849, 906
FokI GGATG 4 cut(s) 289, 290, 579, 937
FriOI GRGCYC 2 cut(s) 343, 897
Fsp4HI GCNGC 6 cut(s) 626, 701, 732, 788, 849, 906
FspBI CTAG 5 cut(s) 441, 540, 890, 915, 921
GlaI GCGC 1 cut(s) 909
GluI GCNGC 6 cut(s) 626, 701, 732, 788, 849, 906
GsaI CCCAGC 1 cut(s) 959
GsuI CTGGAG 1 cut(s) 448
HaeIII GGCC 2 cut(s) 36, 239
HapII CCGG 5 cut(s) 385, 764, 794, 861, 884
HhaI GCGC 1 cut(s) 910
Hin6I GCGC 1 cut(s) 908
HinP1I GCGC 1 cut(s) 908
HincII GTYRAC 1 cut(s) 585
HindII GTYRAC 1 cut(s) 585
HindIII AAGCTT 2 cut(s) 410, 899
HinfI GANTC 2 cut(s) 175, 818
HpaII CCGG 5 cut(s) 385, 764, 794, 861, 884
HphI GGTGA 2 cut(s) 434, 511
Hpy166II GTNNAC 1 cut(s) 585
Hpy188I TCNGA 3 cut(s) 65, 322, 492
Hpy188III TCNNGA 8 cut(s) 134, 151, 264, 293, 404, 406, 680, 890
Hpy8I GTNNAC 1 cut(s) 585
Hpy99I CGWCG 1 cut(s) 537
HpyAV CCTTC 1 cut(s) 168
HpyCH4IV ACGT 3 cut(s) 230, 389, 535
HpyCH4V TGCA 2 cut(s) 54, 774
HpyF10VI GCNNNNNNNGC 6 cut(s) 12, 219, 485, 706, 907, 911
HpyF3I CTNAG 3 cut(s) 489, 503, 748
HpySE526I ACGT 3 cut(s) 230, 389, 535
HspAI GCGC 1 cut(s) 908
Ksp22I TGATCA 2 cut(s) 136, 640
Kzo9I GATC 5 cut(s) 136, 640, 766, 813, 886
LmnI GCTCC 2 cut(s) 379, 564
Lsp1109I GCAGC 5 cut(s) 637, 687, 743, 799, 835
LweI GCATC 4 cut(s) 144, 311, 444, 881
MaeI CTAG 5 cut(s) 441, 540, 890, 915, 921
MaeII ACGT 3 cut(s) 230, 389, 535
MaeIII GTNAC 3 cut(s) 422, 451, 991
MalI GATC 5 cut(s) 138, 642, 768, 815, 888
MboI GATC 5 cut(s) 136, 640, 766, 813, 886
MboII GAAGA 8 cut(s) 211, 249, 252, 386, 538, 538, 644, 936
MflI RGATCY 1 cut(s) 886
MhlI GDGCHC 4 cut(s) 17, 343, 384, 897
MluCI AATT 5 cut(s) 40, 58, 267, 283, 984
MmeI TCCRAC 1 cut(s) 145
MroXI GAANNNNTTC 1 cut(s) 206
MseI TTAA 2 cut(s) 632, 972
MslI CAYNNNNRTG 3 cut(s) 132, 194, 774
MspI CCGG 5 cut(s) 385, 764, 794, 861, 884
MspR9I CCNGG 1 cut(s) 861
MvnI CGCG 1 cut(s) 908
MwoI GCNNNNNNNGC 6 cut(s) 12, 219, 485, 706, 907, 911
NciI CCSGG 1 cut(s) 861
NcoI CCATGG 1 cut(s) 365
NdeI CATATG 1 cut(s) 332
NdeII GATC 5 cut(s) 136, 640, 766, 813, 886
NlaIV GGNNCC 3 cut(s) 694, 721, 964
NmeAIII GCCGAG 2 cut(s) 362, 696
NmuCI GTSAC 2 cut(s) 422, 451
NspI RCATGY 1 cut(s) 556
OliI CACNNNNGTG 1 cut(s) 774
PaeR7I CTCGAG 1 cut(s) 404
PagI TCATGA 3 cut(s) 133, 150, 679
PciI ACATGT 1 cut(s) 552
PcsI WCGNNNNNNNCGW 3 cut(s) 242, 723, 813
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 2 cut(s) 175, 818
PinAI ACCGGT 1 cut(s) 793
PkrI GCNGC 6 cut(s) 627, 702, 733, 789, 850, 907
PpuMI RGGWCCY 2 cut(s) 48, 962
PscI ACATGT 1 cut(s) 552
PsiI TTATAA 1 cut(s) 621
Psp124BI GAGCTC 1 cut(s) 897
Psp5II RGGWCCY 2 cut(s) 48, 962
PspFI CCCAGC 1 cut(s) 955
PspN4I GGNNCC 3 cut(s) 694, 721, 964
PspPI GGNCC 3 cut(s) 48, 962, 980
PspPPI RGGWCCY 2 cut(s) 48, 962
PstI CTGCAG 1 cut(s) 776
PsuI RGATCY 1 cut(s) 886
RsaI GTAC 3 cut(s) 76, 497, 882
RsaNI GTAC 3 cut(s) 75, 496, 881
RseI CAYNNNNRTG 3 cut(s) 132, 194, 774
SacI GAGCTC 1 cut(s) 897
SaqAI TTAA 2 cut(s) 632, 972
SatI GCNGC 6 cut(s) 626, 701, 732, 788, 849, 906
Sau3AI GATC 5 cut(s) 136, 640, 766, 813, 886
Sau96I GGNCC 3 cut(s) 48, 962, 980
ScaI AGTACT 1 cut(s) 497
ScrFI CCNGG 1 cut(s) 861
SduI GDGCHC 4 cut(s) 17, 343, 384, 897
SfaNI GCATC 4 cut(s) 144, 311, 444, 881
SfcI CTRYAG 1 cut(s) 772
Sfr274I CTCGAG 1 cut(s) 404
SinI GGWCC 3 cut(s) 48, 962, 980
SlaI CTCGAG 1 cut(s) 404
SmiMI CAYNNNNRTG 3 cut(s) 132, 194, 774
SmlI CTYRAG 2 cut(s) 404, 896
SmoI CTYRAG 2 cut(s) 404, 896
Sse9I AATT 5 cut(s) 40, 58, 267, 283, 984
SsiI CCGC 1 cut(s) 906
SspI AATATT 2 cut(s) 673, 833
SspMI CTAG 5 cut(s) 441, 540, 890, 915, 921
SstI GAGCTC 1 cut(s) 897
StyD4I CCNGG 1 cut(s) 859
StyI CCWWGG 1 cut(s) 365
TaiI ACGT 3 cut(s) 233, 392, 538
TaqI TCGA 3 cut(s) 405, 549, 816
TaqII GACCGA 1 cut(s) 389
TasI AATT 5 cut(s) 40, 58, 267, 283, 984
TatI WGTACW 1 cut(s) 495
TauI GCSGC 1 cut(s) 908
TfiI GAWTC 2 cut(s) 175, 818
Tru1I TTAA 2 cut(s) 632, 972
Tru9I TTAA 2 cut(s) 632, 972
TscAI CASTG 2 cut(s) 776, 781
TseFI GTSAC 2 cut(s) 422, 451
TseI GCWGC 5 cut(s) 625, 700, 731, 787, 848
Tsp45I GTSAC 2 cut(s) 422, 451
TspDTI ATGAA 8 cut(s) 116, 150, 188, 212, 668, 825, 842, 855
TspGWI ACGGA 2 cut(s) 715, 822
TspRI CASTG 2 cut(s) 776, 781
VpaK11BI GGWCC 3 cut(s) 48, 962, 980
XapI RAATTY 3 cut(s) 58, 267, 283
XbaI TCTAGA 1 cut(s) 889
XceI RCATGY 1 cut(s) 556
XhoI CTCGAG 1 cut(s) 404
XmnI GAANNNNTTC 1 cut(s) 206
XspI CTAG 5 cut(s) 441, 540, 890, 915, 921
ZrmI AGTACT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.