Rorug02G0032200
MYB Family

transcription, DNA-templated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014417
Physical Location & Seq
Reverse (-)
2549393 .. 2549800
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0032200.1

Sequence Viewer

Length: 408 bp
ATGGTGGTTGAGTTCTCGCCGACGGTGGCACCGGAATTGACGCTGGTGTACAAGAAGCTAAAGGGGTTTTGCTGTAACTGTGGGTTTTTCATACATGATGTTGCAGGATGTGATTCTCTGCTGGTGAAGGAAAAAGAAGAGATCTGCGCGCAAATCTCGGCGGCAGCTATGGCTGGGCTCTCTCTAACATCAGGAAGGCACGGTATTGGGGAGGACAGCGGTGGGGAGATGTCAGGCAGTAGCAAGGGACTGGTAGAGGCCGTGTTGCCTTTGGTGGGTGATGTGGTGATATCGGAACCTATAGGAGCTGAGGTGGGGGGAGTCCAAGTGCCACTGGAAGTCCATGCATCACTGACCTCCAATATTCTTGGAGCCACAGGTCCAGTTGCGAAGGCCTTTGCAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

135

Amino Acids

13.66

Weight (kDa)

4.78

Isoelectric Point (pI)

37.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014417)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56840
fragaria_vesca FvH4_1g07170 FvH4_1g07170
malus_domestica MD02G1076300.v1.1 MD15G1204700.v1.1
prunus_persica Prupe.7G212300_v2.0.a1
pyrus_communis pycom02g06060 pycom15g18170
rosa_chinensis RchiOBHm_Chr2g0093071
rosa_laevigata RLG00000016365
rosa_roxburghii Rroxscaffold_2G00148540
rosa_rugosa Rorug02G0032200
rosa_samantha Rh2AG077700 Rh2BG079100 Rh2CG081500 Rh2DG076600
rosa_wichuraiana Rw2G006850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 28
AccII CGCG 1 cut(s) 149
AciI CCGC 2 cut(s) 161, 219
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 275
AluBI AGCT 3 cut(s) 58, 167, 308
AluI AGCT 3 cut(s) 58, 167, 308
AoxI GGCC 2 cut(s) 258, 393
ApeKI GCWGC 1 cut(s) 164
AspLEI GCGC 2 cut(s) 149, 151
AspS9I GGNCC 1 cut(s) 380
AsuHPI GGTGA 3 cut(s) 136, 290, 298
AvaII GGWCC 1 cut(s) 380
BanI GGYRCC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 180
BbvCI CCTCAGC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 176
BceAI ACGGC 1 cut(s) 245
BfaI CTAG 1 cut(s) 406
BfmI CTRYAG 1 cut(s) 300
BglII AGATCT 1 cut(s) 141
BisI GCNGC 2 cut(s) 162, 165
BlsI GCNGC 2 cut(s) 163, 166
Bme18I GGWCC 1 cut(s) 380
BmgT120I GGNCC 1 cut(s) 380
BmiI GGNNCC 3 cut(s) 30, 297, 373
BmsI GCATC 1 cut(s) 356
Bpu10I CCTNAGC 1 cut(s) 309
BsaWI WCCGGW 1 cut(s) 31
BsaXI ACNNNNNCTCC 4 cut(s) 297, 312, 327, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse1I ACTGG 3 cut(s) 255, 339, 383
BseGI GGATG 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 3 cut(s) 255, 339, 383
BsePI GCGCGC 1 cut(s) 147
BseXI GCAGC 1 cut(s) 176
BseYI CCCAGC 1 cut(s) 173
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 2 cut(s) 260, 395
BshNI GGYRCC 1 cut(s) 28
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 261
BslI CCNNNNNNNGG 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 261
BsnI GGCC 2 cut(s) 260, 395
Bsp1286I GDGCHC 1 cut(s) 180
Bsp1407I TGTACA 1 cut(s) 48
Bsp143I GATC 1 cut(s) 141
BspACI CCGC 2 cut(s) 161, 219
BspANI GGCC 2 cut(s) 260, 395
BspCNI CTCAG 1 cut(s) 301
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 3 cut(s) 30, 297, 373
BspT107I GGYRCC 1 cut(s) 28
BsrGI TGTACA 1 cut(s) 48
BsrI ACTGG 3 cut(s) 255, 339, 383
BssHII GCGCGC 1 cut(s) 147
BssMI GATC 1 cut(s) 141
Bst4CI ACNGT 3 cut(s) 25, 80, 203
Bst6I CTCTTC 1 cut(s) 132
BstAUI TGTACA 1 cut(s) 48
BstC8I GCNNGC 2 cut(s) 149, 403
BstDEI CTNAG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 113
BstFNI CGCG 1 cut(s) 149
BstHHI GCGC 2 cut(s) 149, 151
BstKTI GATC 1 cut(s) 144
BstMBI GATC 1 cut(s) 141
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstSFI CTRYAG 1 cut(s) 300
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 176
BstX2I RGATCY 1 cut(s) 141
BstYI RGATCY 1 cut(s) 141
BsuRI GGCC 2 cut(s) 260, 395
BtsCI GGATG 1 cut(s) 113
BtsIMutI CAGTG 2 cut(s) 332, 350
Cac8I GCNNGC 2 cut(s) 149, 403
CfoI GCGC 2 cut(s) 149, 151
Cfr13I GGNCC 1 cut(s) 380
CseI GACGC 1 cut(s) 49
Csp6I GTAC 1 cut(s) 49
CviAII CATG 2 cut(s) 95, 344
CviJI RGCY 9 cut(s) 58, 167, 173, 178, 260, 308, 374, 395, 405
CviKI_1 RGCY 9 cut(s) 58, 167, 173, 178, 260, 308, 374, 395, 405
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 1 cut(s) 309
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco147I AGGCCT 1 cut(s) 395
Eco24I GRGCYC 1 cut(s) 180
Eco32I GATATC 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 380
EcoRV GATATC 1 cut(s) 291
EcoT22I ATGCAT 1 cut(s) 349
EcoT38I GRGCYC 1 cut(s) 180
FaeI CATG 2 cut(s) 98, 347
FaiI YATR 5 cut(s) 92, 96, 170, 302, 345
FaqI GGGAC 1 cut(s) 261
FatI CATG 2 cut(s) 94, 343
Fnu4HI GCNGC 2 cut(s) 162, 165
FokI GGATG 1 cut(s) 120
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 2 cut(s) 162, 165
FspBI CTAG 1 cut(s) 406
GlaI GCGC 2 cut(s) 148, 150
GluI GCNGC 2 cut(s) 162, 165
GsaI CCCAGC 1 cut(s) 177
HaeIII GGCC 2 cut(s) 260, 395
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 49
HhaI GCGC 2 cut(s) 149, 151
Hin1II CATG 2 cut(s) 98, 347
Hin6I GCGC 2 cut(s) 147, 149
HinP1I GCGC 2 cut(s) 147, 149
HinfI GANTC 2 cut(s) 113, 321
HpaII CCGG 1 cut(s) 32
HphI GGTGA 3 cut(s) 136, 290, 298
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 1 cut(s) 295
Hpy188III TCNNGA 1 cut(s) 192
Hpy8I GTNNAC 1 cut(s) 49
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 3 cut(s) 121, 189, 385
HpyCH4III ACNGT 3 cut(s) 25, 80, 203
HpyCH4V TGCA 3 cut(s) 104, 347, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 309
Hsp92II CATG 2 cut(s) 98, 347
HspAI GCGC 2 cut(s) 147, 149
Kzo9I GATC 1 cut(s) 141
LmnI GCTCC 2 cut(s) 305, 371
Lsp1109I GCAGC 1 cut(s) 176
LweI GCATC 1 cut(s) 356
MaeI CTAG 1 cut(s) 406
MaeIII GTNAC 1 cut(s) 74
MalI GATC 1 cut(s) 143
MboI GATC 1 cut(s) 141
MboII GAAGA 1 cut(s) 149
MflI RGATCY 1 cut(s) 141
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 1 cut(s) 35
MlyI GAGTC 1 cut(s) 330
MnlI CCTC 4 cut(s) 205, 250, 304, 367
Mph1103I ATGCAT 1 cut(s) 349
MspA1I CMGCKG 1 cut(s) 219
MspI CCGG 1 cut(s) 32
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeII GATC 1 cut(s) 141
NlaIII CATG 2 cut(s) 98, 347
NlaIV GGNNCC 3 cut(s) 30, 297, 373
NmeAIII GCCGAG 1 cut(s) 137
NsiI ATGCAT 1 cut(s) 349
PauI GCGCGC 1 cut(s) 147
PceI AGGCCT 1 cut(s) 395
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 2 cut(s) 163, 166
PleI GAGTC 1 cut(s) 329
PpsI GAGTC 1 cut(s) 329
PspFI CCCAGC 1 cut(s) 173
PspN4I GGNNCC 3 cut(s) 30, 297, 373
PspPI GGNCC 1 cut(s) 380
PsuI RGATCY 1 cut(s) 141
PteI GCGCGC 1 cut(s) 147
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SatI GCNGC 2 cut(s) 162, 165
Sau3AI GATC 1 cut(s) 141
Sau96I GGNCC 1 cut(s) 380
SchI GAGTC 1 cut(s) 330
SduI GDGCHC 1 cut(s) 180
SetI ASST 7 cut(s) 60, 169, 301, 310, 315, 359, 382
SfaNI GCATC 1 cut(s) 356
SfcI CTRYAG 1 cut(s) 300
SinI GGWCC 1 cut(s) 380
Sse9I AATT 1 cut(s) 35
SseBI AGGCCT 1 cut(s) 395
SsiI CCGC 2 cut(s) 161, 219
SspI AATATT 1 cut(s) 364
SspMI CTAG 1 cut(s) 406
StuI AGGCCT 1 cut(s) 395
TaaI ACNGT 3 cut(s) 25, 80, 203
TasI AATT 1 cut(s) 35
TatI WGTACW 1 cut(s) 48
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 1 cut(s) 113
TscAI CASTG 2 cut(s) 339, 357
TseI GCWGC 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 79
TspRI CASTG 2 cut(s) 339, 357
VpaK11BI GGWCC 1 cut(s) 380
XspI CTAG 1 cut(s) 406
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.