FvH4_1g07170
MYB Family

transcription, DNA-templated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014417
Physical Location & Seq
Forward (+)
3794381 .. 3796052
1672 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g07170.t2

Sequence Viewer

Length: 1050 bp
ATGGGCAGAAAGTGCTCGCATTGTGGAAACATAGGCCATAATTCAAGGACGTGTACAAATTTCAGAGGCAGTTCCGCTGCTGGTTTTGTTGGTACTACTCCTCCTCATGGATTCAGGCTCTTCGGTGTTCAAGTTCATCATCATGATCAGGTGTCTTCTTCTGTATCTTCGTTTAATGCCATGAACATGATGATGAAGAAAAGCTTTAGCATGGATTGCTTGCCCACATCTTCAGCTTCATCCTCATCCCCATCTTCTTCAAGGATTTCCATTGATAATGAACATTCCGATCATCACAAAGCTCCCATCGGTTATCTCTCTGATGGCCTCATATGTCGTGCTCAAGACAGGAAAAAGGGAGTTCCATGGACAGAAGAGGAGCACAGAACATTTCTGATGGGGCTTGAGAAGTTAGGGAAGGGGGACTGGAGAGGAATCTCTAGGAACTATGTGACCACCAGAACACCAACTCAAGTTGCGAGTCATGCTCAGAAGTATTTTCTCAGGCAAGCAACTCTCACCAAGAAGAAGCGTCGTTCAAGCCTCTTCGATATGTTTGGGGGCAATAACAGTGATCCACAATCCAAGCCAAGTAGTACTATCGATCCTGCGCAATGTGTTAACAGTAATATTCCATCAAGCCCTCAACGTCAAAGTAATATTATTCAGCTTCAACTTAGTACTACCAATACATCTGCATCACAAAATCTAAAACTATCAGATCATCATCAGCAAAAACCAGCTGACTACAGCAGTTCTACTCCTCCCTTAGGCAGTTCACATGATCGTGATCGTGTTCGTGATCGCACTATGCCTGGATGGATTTACGGGTTGATTGATTCCCAGCTGAAATATTCAAATGCAGTATTTTCATCATCAGAACCCAGTAATATACCACTACCACCGTCATCATCAGTAGTACCAGATCATCTAGAGCTGACGCTCGCTTCGCCGGTTAGGCCTTTGGATTTAGATCAAAATAGATTGTCGTCGTCATCATCCCCAACATCTGGTCCTCTCCACAATACCGGACCTATTAGTGTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

350

Amino Acids

38.13

Weight (kDa)

9.51

Isoelectric Point (pI)

56.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 69 - 115 8.4e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014417)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56840
fragaria_vesca FvH4_1g07170 FvH4_1g07170
malus_domestica MD02G1076300.v1.1 MD15G1204700.v1.1
prunus_persica Prupe.7G212300_v2.0.a1
pyrus_communis pycom02g06060 pycom15g18170
rosa_chinensis RchiOBHm_Chr2g0093071
rosa_laevigata RLG00000016365
rosa_roxburghii Rroxscaffold_2G00148540
rosa_rugosa Rorug02G0032200
rosa_samantha Rh2AG077700 Rh2BG079100 Rh2CG081500 Rh2DG076600
rosa_wichuraiana Rw2G006850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 612
AccB7I CCANNNNNTGG 1 cut(s) 1010
AciI CCGC 1 cut(s) 75
AclWI GGATC 2 cut(s) 569, 599
AcsI RAATTY 1 cut(s) 58
AcuI CTGAAG 1 cut(s) 216
AfaI GTAC 5 cut(s) 55, 94, 598, 682, 921
AfiI CCNNNNNNNGG 3 cut(s) 107, 770, 1010
AflIII ACRYGT 1 cut(s) 50
AgsI TTSAA 6 cut(s) 45, 131, 261, 540, 674, 858
AjiI CACGTC 1 cut(s) 51
AjnI CCWGG 1 cut(s) 814
AluBI AGCT 7 cut(s) 204, 236, 302, 670, 743, 847, 937
AluI AGCT 7 cut(s) 204, 236, 302, 670, 743, 847, 937
Alw21I GWGCWC 3 cut(s) 17, 343, 384
AlwI GGATC 2 cut(s) 569, 599
AoxI GGCC 3 cut(s) 34, 325, 959
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 58
ArsI GACNNNNNNTTYG 2 cut(s) 931, 963
AspLEI GCGC 1 cut(s) 613
AspS9I GGNCC 2 cut(s) 1013, 1031
AsuHPI GGTGA 1 cut(s) 511
AvaII GGWCC 2 cut(s) 1013, 1031
AxyI CCTNAGG 1 cut(s) 769
BbsI GAAGAC 1 cut(s) 147
Bbv12I GWGCWC 3 cut(s) 17, 343, 384
BbvI GCAGC 1 cut(s) 64
BccI CCATC 6 cut(s) 259, 314, 317, 391, 643, 813
BciT130I CCWGG 1 cut(s) 816
BclI TGATCA 1 cut(s) 145
BfaI CTAG 2 cut(s) 441, 932
BfmI CTRYAG 1 cut(s) 748
BglI GCCNNNNNGGC 1 cut(s) 958
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
BmcAI AGTACT 2 cut(s) 598, 682
Bme1390I CCNGG 1 cut(s) 816
Bme18I GGWCC 2 cut(s) 1013, 1031
BmgBI CACGTC 1 cut(s) 51
BmgT120I GGNCC 2 cut(s) 1013, 1031
BmrFI CCNGG 1 cut(s) 816
BmrI ACTGGG 1 cut(s) 879
BmsI GCATC 1 cut(s) 707
BmuI ACTGGG 1 cut(s) 879
BpiI GAAGAC 1 cut(s) 147
BplI GAGNNNNNCTC 2 cut(s) 472, 504
BpmI CTGGAG 1 cut(s) 448
BpuEI CTTGAG 3 cut(s) 327, 425, 456
Bsa29I ATCGAT 1 cut(s) 603
BsaBI GATNNNNATC 3 cut(s) 726, 789, 972
BsaJI CCNNGG 1 cut(s) 365
BsaWI WCCGGW 1 cut(s) 1028
BsaXI ACNNNNNCTCC 2 cut(s) 85, 115
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 770, 1010
Bse118I RCCGGY 1 cut(s) 952
Bse1I ACTGG 2 cut(s) 431, 885
Bse21I CCTNAGG 1 cut(s) 769
Bse3DI GCAATG 1 cut(s) 620
Bse8I GATNNNNATC 3 cut(s) 726, 789, 972
BseBI CCWGG 1 cut(s) 816
BseCI ATCGAT 1 cut(s) 603
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 4 cut(s) 239, 245, 824, 998
BseJI GATNNNNATC 3 cut(s) 726, 789, 972
BseLI CCNNNNNNNGG 3 cut(s) 107, 770, 1010
BseMI GCAATG 1 cut(s) 620
BseMII CTCAG 2 cut(s) 503, 517
BseNI ACTGG 2 cut(s) 431, 885
BseRI GAGGAG 4 cut(s) 90, 93, 392, 753
BseXI GCAGC 1 cut(s) 64
BseYI CCCAGC 1 cut(s) 843
BshFI GGCC 3 cut(s) 36, 327, 961
BshVI ATCGAT 1 cut(s) 603
BsiHKAI GWGCWC 3 cut(s) 17, 343, 384
BsiSI CCGG 2 cut(s) 953, 1029
BslFI GGGAC 1 cut(s) 437
BslI CCNNNNNNNGG 3 cut(s) 107, 770, 1010
BsmFI GGGAC 1 cut(s) 437
BsnI GGCC 3 cut(s) 36, 327, 961
Bsp1286I GDGCHC 3 cut(s) 17, 343, 384
Bsp1407I TGTACA 1 cut(s) 53
Bsp19I CCATGG 1 cut(s) 365
BspACI CCGC 1 cut(s) 75
BspANI GGCC 3 cut(s) 36, 327, 961
BspCNI CTCAG 2 cut(s) 502, 516
BspDI ATCGAT 1 cut(s) 603
BspHI TCATGA 1 cut(s) 142
BspPI GGATC 2 cut(s) 569, 599
BspQI GCTCTTC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 620
BsrFI RCCGGY 1 cut(s) 952
BsrGI TGTACA 1 cut(s) 53
BsrI ACTGG 2 cut(s) 431, 885
BssAI RCCGGY 1 cut(s) 952
BssECI CCNNGG 1 cut(s) 365
BssT1I CCWWGG 1 cut(s) 365
Bst2UI CCWGG 1 cut(s) 816
Bst4CI ACNGT 3 cut(s) 572, 626, 906
Bst6I CTCTTC 3 cut(s) 125, 369, 551
BstAPI GCANNNNNTGC 2 cut(s) 12, 216
BstAUI TGTACA 1 cut(s) 53
BstC8I GCNNGC 4 cut(s) 17, 221, 510, 945
BstDEI CTNAG 4 cut(s) 489, 503, 677, 769
BstDSI CCRYGG 1 cut(s) 365
BstENI CCTNNNNNAGG 1 cut(s) 768
BstF5I GGATG 4 cut(s) 239, 245, 824, 998
BstHHI GCGC 1 cut(s) 613
BstMWI GCNNNNNNNGC 5 cut(s) 12, 216, 485, 949, 958
BstNI CCWGG 1 cut(s) 816
BstSCI CCNGG 1 cut(s) 814
BstSFI CTRYAG 1 cut(s) 748
BstV1I GCAGC 1 cut(s) 64
BstV2I GAAGAC 1 cut(s) 147
Bsu15I ATCGAT 1 cut(s) 603
Bsu36I CCTNAGG 1 cut(s) 769
BsuRI GGCC 3 cut(s) 36, 327, 961
BsuTUI ATCGAT 1 cut(s) 603
BtgI CCRYGG 1 cut(s) 365
BtrI CACGTC 1 cut(s) 51
BtsCI GGATG 4 cut(s) 239, 245, 824, 998
BtsIMutI CAGTG 1 cut(s) 577
Cac8I GCNNGC 4 cut(s) 17, 221, 510, 945
CciI TCATGA 1 cut(s) 142
CfoI GCGC 1 cut(s) 613
Cfr10I RCCGGY 1 cut(s) 952
Cfr13I GGNCC 2 cut(s) 1013, 1031
ClaI ATCGAT 1 cut(s) 603
CseI GACGC 2 cut(s) 521, 949
Csp6I GTAC 5 cut(s) 54, 93, 597, 681, 920
CviAII CATG 8 cut(s) 107, 143, 181, 187, 211, 366, 485, 782
CviQI GTAC 5 cut(s) 54, 93, 597, 681, 920
DdeI CTNAG 4 cut(s) 489, 503, 677, 769
Eam1104I CTCTTC 3 cut(s) 125, 369, 551
EarI CTCTTC 3 cut(s) 125, 369, 551
Eco130I CCWWGG 1 cut(s) 365
Eco147I AGGCCT 1 cut(s) 961
Eco47I GGWCC 2 cut(s) 1013, 1031
Eco57I CTGAAG 1 cut(s) 216
Eco81I CCTNAGG 1 cut(s) 769
EcoNI CCTNNNNNAGG 1 cut(s) 768
EcoRII CCWGG 1 cut(s) 814
EcoT14I CCWWGG 1 cut(s) 365
ErhI CCWWGG 1 cut(s) 365
FaeI CATG 8 cut(s) 110, 146, 184, 190, 214, 369, 488, 785
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FaqI GGGAC 1 cut(s) 437
FatI CATG 8 cut(s) 106, 142, 180, 186, 210, 365, 484, 781
FauNDI CATATG 1 cut(s) 332
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 4 cut(s) 226, 232, 831, 985
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 2 cut(s) 441, 932
FspI TGCGCA 1 cut(s) 612
GlaI GCGC 1 cut(s) 612
GluI GCNGC 1 cut(s) 78
GsaI CCCAGC 1 cut(s) 847
GsuI CTGGAG 1 cut(s) 448
HaeIII GGCC 3 cut(s) 36, 327, 961
HapII CCGG 2 cut(s) 953, 1029
HgaI GACGC 2 cut(s) 521, 949
HhaI GCGC 1 cut(s) 613
Hin1II CATG 8 cut(s) 110, 146, 184, 190, 214, 369, 488, 785
Hin6I GCGC 1 cut(s) 611
HinP1I GCGC 1 cut(s) 611
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HindIII AAGCTT 1 cut(s) 202
HinfI GANTC 4 cut(s) 111, 435, 481, 839
HpaI GTTAAC 1 cut(s) 622
HpaII CCGG 2 cut(s) 953, 1029
HphI GGTGA 1 cut(s) 511
Hpy166II GTNNAC 3 cut(s) 54, 622, 779
Hpy188I TCNGA 7 cut(s) 65, 289, 322, 396, 492, 721, 880
Hpy188III TCNNGA 5 cut(s) 143, 344, 788, 800, 932
Hpy8I GTNNAC 3 cut(s) 54, 622, 779
Hpy99I CGWCG 2 cut(s) 537, 994
HpyAV CCTTC 1 cut(s) 412
HpyCH4III ACNGT 3 cut(s) 572, 626, 906
HpyCH4IV ACGT 2 cut(s) 50, 649
HpyCH4V TGCA 2 cut(s) 698, 863
HpyF10VI GCNNNNNNNGC 5 cut(s) 12, 216, 485, 949, 958
HpyF3I CTNAG 4 cut(s) 489, 503, 677, 769
HpySE526I ACGT 2 cut(s) 50, 649
Hsp92II CATG 8 cut(s) 110, 146, 184, 190, 214, 369, 488, 785
HspAI GCGC 1 cut(s) 611
Ksp22I TGATCA 1 cut(s) 145
KspAI GTTAAC 1 cut(s) 622
LguI GCTCTTC 1 cut(s) 125
LmnI GCTCC 2 cut(s) 307, 379
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 1 cut(s) 707
MaeI CTAG 2 cut(s) 441, 932
MaeII ACGT 2 cut(s) 50, 649
MaeIII GTNAC 2 cut(s) 451, 1042
MhlI GDGCHC 3 cut(s) 17, 343, 384
MluCI AATT 2 cut(s) 40, 58
MlyI GAGTC 1 cut(s) 490
MseI TTAA 2 cut(s) 174, 621
MslI CAYNNNNRTG 4 cut(s) 141, 185, 191, 786
MspA1I CMGCKG 3 cut(s) 77, 743, 847
MspI CCGG 2 cut(s) 953, 1029
MspR9I CCNGG 1 cut(s) 816
MvaI CCWGG 1 cut(s) 816
MwoI GCNNNNNNNGC 5 cut(s) 12, 216, 485, 949, 958
NcoI CCATGG 1 cut(s) 365
NdeI CATATG 1 cut(s) 332
NlaIII CATG 8 cut(s) 110, 146, 184, 190, 214, 369, 488, 785
NmuCI GTSAC 1 cut(s) 451
NsbI TGCGCA 1 cut(s) 612
PagI TCATGA 1 cut(s) 142
PceI AGGCCT 1 cut(s) 961
PciSI GCTCTTC 1 cut(s) 125
PfeI GAWTC 3 cut(s) 111, 435, 839
PflMI CCANNNNNTGG 1 cut(s) 1010
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 1 cut(s) 489
PpsI GAGTC 1 cut(s) 489
Psp6I CCWGG 1 cut(s) 814
PspFI CCCAGC 1 cut(s) 843
PspGI CCWGG 1 cut(s) 814
PspPI GGNCC 2 cut(s) 1013, 1031
PvuII CAGCTG 2 cut(s) 743, 847
RsaI GTAC 5 cut(s) 55, 94, 598, 682, 921
RsaNI GTAC 5 cut(s) 54, 93, 597, 681, 920
RseI CAYNNNNRTG 4 cut(s) 141, 185, 191, 786
SapI GCTCTTC 1 cut(s) 125
SaqAI TTAA 2 cut(s) 174, 621
SatI GCNGC 1 cut(s) 78
Sau96I GGNCC 2 cut(s) 1013, 1031
ScaI AGTACT 2 cut(s) 598, 682
SchI GAGTC 1 cut(s) 490
ScrFI CCNGG 1 cut(s) 816
SduI GDGCHC 3 cut(s) 17, 343, 384
SfaNI GCATC 1 cut(s) 707
SfcI CTRYAG 1 cut(s) 748
SinI GGWCC 2 cut(s) 1013, 1031
SmiMI CAYNNNNRTG 4 cut(s) 141, 185, 191, 786
SmlI CTYRAG 3 cut(s) 342, 404, 471
SmoI CTYRAG 3 cut(s) 342, 404, 471
Sse9I AATT 2 cut(s) 40, 58
SseBI AGGCCT 1 cut(s) 961
SsiI CCGC 1 cut(s) 75
SspI AATATT 3 cut(s) 631, 661, 854
SspMI CTAG 2 cut(s) 441, 932
StuI AGGCCT 1 cut(s) 961
StyD4I CCNGG 1 cut(s) 814
StyI CCWWGG 1 cut(s) 365
TaaI ACNGT 3 cut(s) 572, 626, 906
TaiI ACGT 2 cut(s) 53, 652
TaqI TCGA 2 cut(s) 549, 603
TasI AATT 2 cut(s) 40, 58
TatI WGTACW 3 cut(s) 53, 596, 680
TfiI GAWTC 3 cut(s) 111, 435, 839
Tru1I TTAA 2 cut(s) 174, 621
Tru9I TTAA 2 cut(s) 174, 621
TscAI CASTG 1 cut(s) 577
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 6 cut(s) 125, 197, 209, 228, 294, 861
TspRI CASTG 1 cut(s) 577
Van91I CCANNNNNTGG 1 cut(s) 1010
VpaK11BI GGWCC 2 cut(s) 1013, 1031
XagI CCTNNNNNAGG 1 cut(s) 768
XapI RAATTY 1 cut(s) 58
XbaI TCTAGA 1 cut(s) 931
XspI CTAG 2 cut(s) 441, 932
ZrmI AGTACT 2 cut(s) 598, 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.