RLG00000016365
MYB Family

transcription, DNA-templated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014417
Physical Location & Seq
Forward (+)
5928972 .. 5930315
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016365

Sequence Viewer

Length: 1044 bp
ATGGGCAGAAAGTGCTCACATTGCGGAAACATGGGCCATAATTCAAGGACCTGTACAAATTTCAGAGGCAGTTCCACTGCTGGTTTTGTTGGTACTACTCCTCATGGATTCAGGCTGTTCGGTGTTCAAGTTCATCATCATGATCATATGTCATCTTCAGTATCTTCTTTTAATGCCATGAACATGATGATGAAGAAAAGCTTTAGCATGGATTGCTTGCCCACATCTTCAGCCTCATCATCATCCCCATCTTCTTCAAGGATATCCATTGATAATGAAAATTCTGATCATCACAAAGCCTCCATCGGTTATGTCTCTGATGGCCTCATATGTCGTGCCCAAGACAGGAAAAAGGGAGTTCCGTGGACGGAAGAGGAGCACAGAACATTTCTGATGGGGCTTGAGAAGTTAGGGAAGGGGGACTGGAGAGGAATCTCTAGGAACTATGTGACCACAAGAACACCAACTCAAGTTGCTAGTCATGCTCAGAAGTATTTTCTCAGGCAAGCAACCCTCACCAAGAAGAAGCGTCGTTCAAGCCTCTTCGATATGTTTGGGAGCAATAGCCGAAATCCACAATCCCAGCCAAGTAGTAGTATCGATCAAGCTCATTGTGTTAACAATATTCCAACAACCCCACAAAGTAAAAGTAATATTCAGCTTCAACTTAGTAGTACTACTACCTCAGCAGCCCAAAATCTAAAACCATCAGTTCATCAGCAAAAACCAGCTGACTACAGCAGTTTTACTCCTCCTTTAGGGAGTATACATGATCATGATCGTGCTCCTGATCGTGCTATGCCTGGATGGATTTACGGGTTGATCGATTCCCAGCTGAAATATTCAAATGCAGCTTCATCAGCAAAACCCAGCACTAGTAATATTCCACCACCATCACCATCATCGTCAGTAGTACCAGATCATCTAGAGCTGACGCTCGCTGCGCCGGTTAGGCCATTGGATTTGGATCAAAATAGATCGTCGTCATCGTCATCCCCGACATCTGGCACTCTCCTCAATATTGGACCTATTAGTGTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

348

Amino Acids

37.69

Weight (kDa)

9.64

Isoelectric Point (pI)

57.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 120 - 166 1.1e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014417)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56840
fragaria_vesca FvH4_1g07170 FvH4_1g07170
malus_domestica MD02G1076300.v1.1 MD15G1204700.v1.1
prunus_persica Prupe.7G212300_v2.0.a1
pyrus_communis pycom02g06060 pycom15g18170
rosa_chinensis RchiOBHm_Chr2g0093071
rosa_laevigata RLG00000016365
rosa_roxburghii Rroxscaffold_2G00148540
rosa_rugosa Rorug02G0032200
rosa_samantha Rh2AG077700 Rh2BG079100 Rh2CG081500 Rh2DG076600
rosa_wichuraiana Rw2G006850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 766
AciI CCGC 1 cut(s) 24
AclWI GGATC 1 cut(s) 975
AcsI RAATTY 2 cut(s) 58, 280
AcuI CTGAAG 2 cut(s) 141, 213
AfaI GTAC 4 cut(s) 55, 94, 676, 915
AfiI CCNNNNNNNGG 3 cut(s) 345, 758, 1004
AgsI TTSAA 6 cut(s) 45, 128, 258, 537, 665, 846
AhlI ACTAGT 1 cut(s) 875
AjnI CCWGG 1 cut(s) 802
AluBI AGCT 7 cut(s) 201, 608, 661, 731, 835, 854, 931
AluI AGCT 7 cut(s) 201, 608, 661, 731, 835, 854, 931
Alw21I GWGCWC 3 cut(s) 17, 381, 787
Alw26I GTCTC 1 cut(s) 319
AlwI GGATC 1 cut(s) 975
AoxI GGCC 3 cut(s) 34, 322, 953
ApeKI GCWGC 3 cut(s) 689, 851, 941
ApoI RAATTY 2 cut(s) 58, 280
AspLEI GCGC 1 cut(s) 946
AspS9I GGNCC 3 cut(s) 34, 48, 1025
AsuHPI GGTGA 2 cut(s) 508, 888
AvaII GGWCC 2 cut(s) 48, 1025
BaeGI GKGCMC 1 cut(s) 340
Bbv12I GWGCWC 3 cut(s) 17, 381, 787
BbvCI CCTCAGC 1 cut(s) 685
BbvI GCAGC 3 cut(s) 701, 863, 928
BccI CCATC 8 cut(s) 256, 311, 314, 388, 715, 801, 901, 907
BciT130I CCWGG 1 cut(s) 804
BclI TGATCA 3 cut(s) 142, 286, 772
BcoDI GTCTC 1 cut(s) 319
BcuI ACTAGT 1 cut(s) 875
BfaI CTAG 4 cut(s) 438, 477, 876, 926
BfmI CTRYAG 1 cut(s) 736
BglI GCCNNNNNGGC 1 cut(s) 952
BisI GCNGC 3 cut(s) 690, 852, 942
BlsI GCNGC 3 cut(s) 691, 853, 943
BmcAI AGTACT 1 cut(s) 676
Bme1390I CCNGG 1 cut(s) 804
Bme18I GGWCC 2 cut(s) 48, 1025
BmgT120I GGNCC 3 cut(s) 34, 48, 1025
BmrFI CCNGG 1 cut(s) 804
BpmI CTGGAG 1 cut(s) 445
Bpu10I CCTNAGC 1 cut(s) 685
BpuEI CTTGAG 2 cut(s) 422, 453
Bsa29I ATCGAT 2 cut(s) 600, 825
BsaBI GATNNNNATC 2 cut(s) 777, 966
BsaJI CCNNGG 1 cut(s) 362
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 3 cut(s) 345, 758, 1004
Bse118I RCCGGY 1 cut(s) 946
Bse1I ACTGG 1 cut(s) 428
Bse3DI GCAATG 1 cut(s) 19
Bse8I GATNNNNATC 2 cut(s) 777, 966
BseBI CCWGG 1 cut(s) 804
BseCI ATCGAT 2 cut(s) 600, 825
BseDI CCNNGG 1 cut(s) 362
BseGI GGATG 3 cut(s) 242, 812, 992
BseJI GATNNNNATC 2 cut(s) 777, 966
BseLI CCNNNNNNNGG 3 cut(s) 345, 758, 1004
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 3 cut(s) 500, 514, 699
BseNI ACTGG 1 cut(s) 428
BseRI GAGGAG 4 cut(s) 90, 389, 741, 1004
BseSI GKGCMC 1 cut(s) 340
BseXI GCAGC 3 cut(s) 701, 863, 928
BseYI CCCAGC 3 cut(s) 582, 831, 869
BshFI GGCC 3 cut(s) 36, 324, 955
BshVI ATCGAT 2 cut(s) 600, 825
BsiHKAI GWGCWC 3 cut(s) 17, 381, 787
BsiSI CCGG 1 cut(s) 947
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 3 cut(s) 345, 758, 1004
BsmAI GTCTC 1 cut(s) 319
BsmFI GGGAC 1 cut(s) 434
BsnI GGCC 3 cut(s) 36, 324, 955
Bsp1286I GDGCHC 4 cut(s) 17, 340, 381, 787
Bsp1407I TGTACA 1 cut(s) 53
BspACI CCGC 1 cut(s) 24
BspANI GGCC 3 cut(s) 36, 324, 955
BspCNI CTCAG 3 cut(s) 499, 513, 698
BspDI ATCGAT 2 cut(s) 600, 825
BspHI TCATGA 2 cut(s) 139, 775
BspPI GGATC 1 cut(s) 975
BsrDI GCAATG 1 cut(s) 19
BsrFI RCCGGY 1 cut(s) 946
BsrGI TGTACA 1 cut(s) 53
BsrI ACTGG 1 cut(s) 428
BssAI RCCGGY 1 cut(s) 946
BssECI CCNNGG 1 cut(s) 362
BssNAI GTATAC 1 cut(s) 767
Bst1107I GTATAC 1 cut(s) 767
Bst2UI CCWGG 1 cut(s) 804
Bst6I CTCTTC 2 cut(s) 366, 548
BstAPI GCANNNNNTGC 2 cut(s) 12, 213
BstAUI TGTACA 1 cut(s) 53
BstC8I GCNNGC 3 cut(s) 218, 507, 939
BstDEI CTNAG 4 cut(s) 486, 500, 668, 685
BstDSI CCRYGG 1 cut(s) 362
BstENI CCTNNNNNAGG 1 cut(s) 756
BstF5I GGATG 3 cut(s) 242, 812, 992
BstHHI GCGC 1 cut(s) 946
BstMAI GTCTC 1 cut(s) 319
BstMWI GCNNNNNNNGC 7 cut(s) 12, 21, 213, 482, 860, 943, 952
BstNI CCWGG 1 cut(s) 804
BstSCI CCNGG 1 cut(s) 802
BstSFI CTRYAG 1 cut(s) 736
BstSLI GKGCMC 1 cut(s) 340
BstV1I GCAGC 3 cut(s) 701, 863, 928
BstZ17I GTATAC 1 cut(s) 767
Bsu15I ATCGAT 2 cut(s) 600, 825
BsuRI GGCC 3 cut(s) 36, 324, 955
BsuTUI ATCGAT 2 cut(s) 600, 825
BtgI CCRYGG 1 cut(s) 362
BtsCI GGATG 3 cut(s) 242, 812, 992
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 3 cut(s) 218, 507, 939
CciI TCATGA 2 cut(s) 139, 775
CfoI GCGC 1 cut(s) 946
Cfr10I RCCGGY 1 cut(s) 946
Cfr13I GGNCC 3 cut(s) 34, 48, 1025
ClaI ATCGAT 2 cut(s) 600, 825
CseI GACGC 2 cut(s) 518, 943
Csp6I GTAC 4 cut(s) 54, 93, 675, 914
CviAII CATG 9 cut(s) 31, 104, 140, 178, 184, 208, 482, 770, 776
CviQI GTAC 4 cut(s) 54, 93, 675, 914
DdeI CTNAG 4 cut(s) 486, 500, 668, 685
Eam1104I CTCTTC 2 cut(s) 366, 548
EarI CTCTTC 2 cut(s) 366, 548
Eco32I GATATC 1 cut(s) 264
Eco47I GGWCC 2 cut(s) 48, 1025
Eco57I CTGAAG 2 cut(s) 141, 213
EcoNI CCTNNNNNAGG 1 cut(s) 756
EcoO109I RGGNCCY 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 802
EcoRV GATATC 1 cut(s) 264
FaeI CATG 9 cut(s) 34, 107, 143, 181, 187, 211, 485, 773, 779
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FaqI GGGAC 1 cut(s) 434
FatI CATG 9 cut(s) 30, 103, 139, 177, 183, 207, 481, 769, 775
FauNDI CATATG 2 cut(s) 147, 329
FbaI TGATCA 3 cut(s) 142, 286, 772
FblI GTMKAC 1 cut(s) 766
Fnu4HI GCNGC 3 cut(s) 690, 852, 942
FokI GGATG 3 cut(s) 229, 819, 979
Fsp4HI GCNGC 3 cut(s) 690, 852, 942
FspBI CTAG 4 cut(s) 438, 477, 876, 926
GlaI GCGC 1 cut(s) 945
GluI GCNGC 3 cut(s) 690, 852, 942
GsaI CCCAGC 3 cut(s) 586, 835, 873
GsuI CTGGAG 1 cut(s) 445
HaeIII GGCC 3 cut(s) 36, 324, 955
HapII CCGG 1 cut(s) 947
HgaI GACGC 2 cut(s) 518, 943
HhaI GCGC 1 cut(s) 946
Hin1II CATG 9 cut(s) 34, 107, 143, 181, 187, 211, 485, 773, 779
Hin6I GCGC 1 cut(s) 944
HinP1I GCGC 1 cut(s) 944
HincII GTYRAC 1 cut(s) 619
HindII GTYRAC 1 cut(s) 619
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 3 cut(s) 108, 432, 827
HpaI GTTAAC 1 cut(s) 619
HpaII CCGG 1 cut(s) 947
HphI GGTGA 2 cut(s) 508, 888
Hpy166II GTNNAC 3 cut(s) 366, 619, 767
Hpy188I TCNGA 5 cut(s) 65, 286, 319, 393, 489
Hpy188III TCNNGA 4 cut(s) 140, 776, 788, 926
Hpy8I GTNNAC 3 cut(s) 366, 619, 767
Hpy99I CGWCG 2 cut(s) 534, 985
HpyAV CCTTC 1 cut(s) 409
HpyCH4V TGCA 1 cut(s) 851
HpyF10VI GCNNNNNNNGC 7 cut(s) 12, 21, 213, 482, 860, 943, 952
HpyF3I CTNAG 4 cut(s) 486, 500, 668, 685
Hsp92II CATG 9 cut(s) 34, 107, 143, 181, 187, 211, 485, 773, 779
HspAI GCGC 1 cut(s) 944
Ksp22I TGATCA 3 cut(s) 142, 286, 772
KspAI GTTAAC 1 cut(s) 619
LmnI GCTCC 3 cut(s) 376, 558, 790
Lsp1109I GCAGC 3 cut(s) 701, 863, 928
MaeI CTAG 4 cut(s) 438, 477, 876, 926
MaeIII GTNAC 2 cut(s) 448, 1036
MboII GAAGA 9 cut(s) 147, 156, 205, 219, 243, 246, 383, 535, 535
MhlI GDGCHC 4 cut(s) 17, 340, 381, 787
MluCI AATT 3 cut(s) 40, 58, 280
MmeI TCCRAC 1 cut(s) 653
MseI TTAA 2 cut(s) 171, 618
MslI CAYNNNNRTG 5 cut(s) 138, 182, 188, 774, 780
MspA1I CMGCKG 2 cut(s) 731, 835
MspI CCGG 1 cut(s) 947
MspR9I CCNGG 1 cut(s) 804
MvaI CCWGG 1 cut(s) 804
MwoI GCNNNNNNNGC 7 cut(s) 12, 21, 213, 482, 860, 943, 952
NdeI CATATG 2 cut(s) 147, 329
NlaIII CATG 9 cut(s) 34, 107, 143, 181, 187, 211, 485, 773, 779
NmuCI GTSAC 1 cut(s) 448
PagI TCATGA 2 cut(s) 139, 775
PcsI WCGNNNNNNNCGW 3 cut(s) 822, 986, 995
PfeI GAWTC 3 cut(s) 108, 432, 827
PkrI GCNGC 3 cut(s) 691, 853, 943
PpuMI RGGWCCY 1 cut(s) 48
Psp5II RGGWCCY 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 802
PspFI CCCAGC 3 cut(s) 582, 831, 869
PspGI CCWGG 1 cut(s) 802
PspPI GGNCC 3 cut(s) 34, 48, 1025
PspPPI RGGWCCY 1 cut(s) 48
PvuII CAGCTG 2 cut(s) 731, 835
RsaI GTAC 4 cut(s) 55, 94, 676, 915
RsaNI GTAC 4 cut(s) 54, 93, 675, 914
RseI CAYNNNNRTG 5 cut(s) 138, 182, 188, 774, 780
SaqAI TTAA 2 cut(s) 171, 618
SatI GCNGC 3 cut(s) 690, 852, 942
Sau96I GGNCC 3 cut(s) 34, 48, 1025
ScaI AGTACT 1 cut(s) 676
ScrFI CCNGG 1 cut(s) 804
SduI GDGCHC 4 cut(s) 17, 340, 381, 787
SfcI CTRYAG 1 cut(s) 736
SinI GGWCC 2 cut(s) 48, 1025
SmiMI CAYNNNNRTG 5 cut(s) 138, 182, 188, 774, 780
SmlI CTYRAG 2 cut(s) 401, 468
SmoI CTYRAG 2 cut(s) 401, 468
SpeI ACTAGT 1 cut(s) 875
Sse9I AATT 3 cut(s) 40, 58, 280
SsiI CCGC 1 cut(s) 24
SspI AATATT 5 cut(s) 625, 655, 842, 883, 1021
SspMI CTAG 4 cut(s) 438, 477, 876, 926
StyD4I CCNGG 1 cut(s) 802
TaqI TCGA 3 cut(s) 546, 600, 825
TasI AATT 3 cut(s) 40, 58, 280
TatI WGTACW 2 cut(s) 53, 674
TfiI GAWTC 3 cut(s) 108, 432, 827
Tru1I TTAA 2 cut(s) 171, 618
Tru9I TTAA 2 cut(s) 171, 618
TscAI CASTG 1 cut(s) 82
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 3 cut(s) 689, 851, 941
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 6 cut(s) 122, 194, 206, 291, 704, 846
TspGWI ACGGA 2 cut(s) 351, 383
TspRI CASTG 1 cut(s) 82
VpaK11BI GGWCC 2 cut(s) 48, 1025
XagI CCTNNNNNAGG 1 cut(s) 756
XapI RAATTY 2 cut(s) 58, 280
XbaI TCTAGA 1 cut(s) 925
XmiI GTMKAC 1 cut(s) 766
XspI CTAG 4 cut(s) 438, 477, 876, 926
ZrmI AGTACT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.