RchiOBHm_Chr2g0093071
MYB Family

transcription, DNA-templated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014417
Physical Location & Seq
Forward (+)
6425764 .. 6427546
1783 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46814

Sequence Viewer

Length: 1032 bp
ATGGGCAGAAAGTGCTCACATTGTGGAAACATGGGCCATAATTCAAGGACCTGTACAAATTTCAGAGGCAGTTCCACTGCTGGTTTTGTTGGTACTACTCCTCATGGATTCAGGCTCTTCGGTGTTCAAGTTCATCATCATGATCATATGTCATCTTCAGTATCTTCTTTTAATGCCATGGACATGATGATGAAGAAAAGCTTTAGCATGGATTGCTTGCCCACATCTTCAGCCTCATCATCATCCCCATCCTCTTCAAGGATATCCATTGATAATGAAAATTCTGATCATCACAAAGCCTCCATTGGTTATGTCTCTGATGGCCTCATATGTCGTGCCCAAGACAGGAAAAAGGGAGTTCCGTGGACAGAAGAGGAGCACAGAACATTTCTGATGGGGCTTGAGAAGTTAGGGAAGGGCGACTGGAGAGGAATCTCTAGGAACTATGTGACCACAAGAACACCAACTCAAGTTGCTAGTCATGCTCAGAAGTATTTTCTCAGGCAAGCAACCCTCACCAAGAAGAAGCGTCGTTCAAGCCTCTTCGATATGTTTGGGAGCAATGGCCGTAATCCACAATCCCAGCCAAGTAGTATCGATCAAGCTCATTGTGTTAACAATATTCCAACAACCCCACAAAGTCAAAGTAATATTCAGCTTCAACTTAGTACTACTACTACCTCAGCAGCCCAAAATCTAAAACCATCAGTTCATCAGCAAAAACCAGCTGACTACAGCAGTTCTACTCCTCCTTTAGGCAGTATACGTGATCCTGATCGCGCTATGCCTGGATGGATTTACGGGTTGATCGATTCCCAGCTGAAATATTCAAATGCAGCTTCATCATCAAAACCCAGCACTAGTAATATTCCACCACCACCACCACCACCATCAGTAGTACCAGATCATCTAGAGCTGACGCTCGCTGCGCCGGTTGTTAGGCCTTTGGATTTGGATCAAAATAGATCGTCGTCGTCGTCTTCCCCGACATCTGGCCCTCTCCTCAATATTGGACCTATTAGTGTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

343

Amino Acids

37.21

Weight (kDa)

9.59

Isoelectric Point (pI)

58.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 120 - 166 1e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014417)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56840
fragaria_vesca FvH4_1g07170 FvH4_1g07170
malus_domestica MD02G1076300.v1.1 MD15G1204700.v1.1
prunus_persica Prupe.7G212300_v2.0.a1
pyrus_communis pycom02g06060 pycom15g18170
rosa_chinensis RchiOBHm_Chr2g0093071
rosa_laevigata RLG00000016365
rosa_roxburghii Rroxscaffold_2G00148540
rosa_rugosa Rorug02G0032200
rosa_samantha Rh2AG077700 Rh2BG079100 Rh2CG081500 Rh2DG076600
rosa_wichuraiana Rw2G006850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 763
AccII CGCG 1 cut(s) 780
AclWI GGATC 2 cut(s) 764, 963
AcoI YGGCCR 1 cut(s) 565
AcsI RAATTY 2 cut(s) 58, 280
AcuI CTGAAG 2 cut(s) 141, 213
AdeI CACNNNGTG 1 cut(s) 23
AfaI GTAC 4 cut(s) 55, 94, 670, 900
AfiI CCNNNNNNNGG 4 cut(s) 258, 345, 755, 992
AgsI TTSAA 6 cut(s) 45, 128, 258, 537, 662, 831
AhlI ACTAGT 1 cut(s) 860
AjnI CCWGG 1 cut(s) 787
AluBI AGCT 7 cut(s) 201, 605, 658, 728, 820, 839, 916
AluI AGCT 7 cut(s) 201, 605, 658, 728, 820, 839, 916
Alw21I GWGCWC 2 cut(s) 17, 381
Alw26I GTCTC 1 cut(s) 319
AlwI GGATC 2 cut(s) 764, 963
AoxI GGCC 5 cut(s) 34, 322, 565, 941, 994
ApeKI GCWGC 3 cut(s) 686, 836, 926
ApoI RAATTY 2 cut(s) 58, 280
AspLEI GCGC 2 cut(s) 782, 931
AspS9I GGNCC 4 cut(s) 34, 48, 995, 1013
AsuHPI GGTGA 1 cut(s) 508
AvaII GGWCC 2 cut(s) 48, 1013
BaeGI GKGCMC 1 cut(s) 340
BbsI GAAGAC 1 cut(s) 972
Bbv12I GWGCWC 2 cut(s) 17, 381
BbvCI CCTCAGC 1 cut(s) 682
BbvI GCAGC 3 cut(s) 698, 848, 913
BccI CCATC 6 cut(s) 256, 314, 388, 712, 786, 898
BceAI ACGGC 1 cut(s) 552
BciT130I CCWGG 1 cut(s) 789
BclI TGATCA 2 cut(s) 142, 286
BcoDI GTCTC 1 cut(s) 319
BcuI ACTAGT 1 cut(s) 860
BfaI CTAG 4 cut(s) 438, 477, 861, 911
BfmI CTRYAG 1 cut(s) 733
BisI GCNGC 3 cut(s) 687, 837, 927
BlsI GCNGC 3 cut(s) 688, 838, 928
BmcAI AGTACT 1 cut(s) 670
Bme1390I CCNGG 1 cut(s) 789
Bme18I GGWCC 2 cut(s) 48, 1013
BmgT120I GGNCC 4 cut(s) 34, 48, 995, 1013
BmrFI CCNGG 1 cut(s) 789
BpiI GAAGAC 1 cut(s) 972
BpmI CTGGAG 1 cut(s) 445
Bpu10I CCTNAGC 1 cut(s) 682
BpuEI CTTGAG 2 cut(s) 422, 453
Bsa29I ATCGAT 2 cut(s) 597, 810
BsaAI YACGTR 1 cut(s) 767
BsaBI GATNNNNATC 2 cut(s) 774, 954
BsaJI CCNNGG 2 cut(s) 177, 362
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 4 cut(s) 258, 345, 755, 992
Bse118I RCCGGY 1 cut(s) 931
Bse1I ACTGG 1 cut(s) 428
Bse3DI GCAATG 1 cut(s) 568
Bse8I GATNNNNATC 2 cut(s) 774, 954
BseBI CCWGG 1 cut(s) 789
BseCI ATCGAT 2 cut(s) 597, 810
BseDI CCNNGG 2 cut(s) 177, 362
BseGI GGATG 3 cut(s) 242, 248, 797
BseJI GATNNNNATC 2 cut(s) 774, 954
BseLI CCNNNNNNNGG 4 cut(s) 258, 345, 755, 992
BseMI GCAATG 1 cut(s) 568
BseMII CTCAG 3 cut(s) 500, 514, 696
BseNI ACTGG 1 cut(s) 428
BseRI GAGGAG 4 cut(s) 90, 389, 738, 992
BseSI GKGCMC 1 cut(s) 340
BseXI GCAGC 3 cut(s) 698, 848, 913
BseYI CCCAGC 3 cut(s) 582, 816, 854
Bsh1236I CGCG 1 cut(s) 780
BshFI GGCC 5 cut(s) 36, 324, 567, 943, 996
BshVI ATCGAT 2 cut(s) 597, 810
BsiHKAI GWGCWC 2 cut(s) 17, 381
BsiSI CCGG 1 cut(s) 932
BslI CCNNNNNNNGG 4 cut(s) 258, 345, 755, 992
BsmAI GTCTC 1 cut(s) 319
BsnI GGCC 5 cut(s) 36, 324, 567, 943, 996
Bsp1286I GDGCHC 3 cut(s) 17, 340, 381
Bsp1407I TGTACA 1 cut(s) 53
Bsp143I GATC 9 cut(s) 142, 286, 598, 769, 775, 807, 904, 955, 965
Bsp19I CCATGG 1 cut(s) 177
BspANI GGCC 5 cut(s) 36, 324, 567, 943, 996
BspCNI CTCAG 3 cut(s) 499, 513, 695
BspDI ATCGAT 2 cut(s) 597, 810
BspFNI CGCG 1 cut(s) 780
BspHI TCATGA 1 cut(s) 139
BspPI GGATC 2 cut(s) 764, 963
BspQI GCTCTTC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 568
BsrFI RCCGGY 1 cut(s) 931
BsrGI TGTACA 1 cut(s) 53
BsrI ACTGG 1 cut(s) 428
BssAI RCCGGY 1 cut(s) 931
BssECI CCNNGG 2 cut(s) 177, 362
BssMI GATC 9 cut(s) 142, 286, 598, 769, 775, 807, 904, 955, 965
BssNAI GTATAC 1 cut(s) 764
BssT1I CCWWGG 1 cut(s) 177
Bst1107I GTATAC 1 cut(s) 764
Bst2UI CCWGG 1 cut(s) 789
Bst6I CTCTTC 4 cut(s) 122, 259, 366, 548
BstAPI GCANNNNNTGC 2 cut(s) 12, 213
BstAUI TGTACA 1 cut(s) 53
BstBAI YACGTR 1 cut(s) 767
BstC8I GCNNGC 3 cut(s) 218, 507, 924
BstDEI CTNAG 4 cut(s) 486, 500, 665, 682
BstDSI CCRYGG 2 cut(s) 177, 362
BstENI CCTNNNNNAGG 2 cut(s) 256, 753
BstF5I GGATG 3 cut(s) 242, 248, 797
BstFNI CGCG 1 cut(s) 780
BstHHI GCGC 2 cut(s) 782, 931
BstKTI GATC 9 cut(s) 145, 289, 601, 772, 778, 810, 907, 958, 968
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 9 cut(s) 142, 286, 598, 769, 775, 807, 904, 955, 965
BstMWI GCNNNNNNNGC 4 cut(s) 12, 213, 482, 928
BstNI CCWGG 1 cut(s) 789
BstSCI CCNGG 1 cut(s) 787
BstSFI CTRYAG 1 cut(s) 733
BstSLI GKGCMC 1 cut(s) 340
BstUI CGCG 1 cut(s) 780
BstV1I GCAGC 3 cut(s) 698, 848, 913
BstV2I GAAGAC 1 cut(s) 972
BstZ17I GTATAC 1 cut(s) 764
Bsu15I ATCGAT 2 cut(s) 597, 810
BsuRI GGCC 5 cut(s) 36, 324, 567, 943, 996
BsuTUI ATCGAT 2 cut(s) 597, 810
BtgI CCRYGG 2 cut(s) 177, 362
BtsCI GGATG 3 cut(s) 242, 248, 797
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 3 cut(s) 218, 507, 924
CciI TCATGA 1 cut(s) 139
CfoI GCGC 2 cut(s) 782, 931
Cfr10I RCCGGY 1 cut(s) 931
Cfr13I GGNCC 4 cut(s) 34, 48, 995, 1013
ClaI ATCGAT 2 cut(s) 597, 810
CseI GACGC 2 cut(s) 518, 928
Csp6I GTAC 4 cut(s) 54, 93, 669, 899
CviAII CATG 7 cut(s) 31, 104, 140, 178, 184, 208, 482
CviQI GTAC 4 cut(s) 54, 93, 669, 899
DdeI CTNAG 4 cut(s) 486, 500, 665, 682
DpnI GATC 9 cut(s) 144, 288, 600, 771, 777, 809, 906, 957, 967
DpnII GATC 9 cut(s) 142, 286, 598, 769, 775, 807, 904, 955, 965
DraIII CACNNNGTG 1 cut(s) 23
EaeI YGGCCR 1 cut(s) 565
Eam1104I CTCTTC 4 cut(s) 122, 259, 366, 548
EarI CTCTTC 4 cut(s) 122, 259, 366, 548
Eco130I CCWWGG 1 cut(s) 177
Eco147I AGGCCT 1 cut(s) 943
Eco32I GATATC 1 cut(s) 264
Eco47I GGWCC 2 cut(s) 48, 1013
Eco57I CTGAAG 2 cut(s) 141, 213
EcoNI CCTNNNNNAGG 2 cut(s) 256, 753
EcoO109I RGGNCCY 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 787
EcoRV GATATC 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 7 cut(s) 34, 107, 143, 181, 187, 211, 485
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FatI CATG 7 cut(s) 30, 103, 139, 177, 183, 207, 481
FauNDI CATATG 2 cut(s) 147, 329
FbaI TGATCA 2 cut(s) 142, 286
FblI GTMKAC 1 cut(s) 763
Fnu4HI GCNGC 3 cut(s) 687, 837, 927
FokI GGATG 3 cut(s) 229, 235, 804
Fsp4HI GCNGC 3 cut(s) 687, 837, 927
FspBI CTAG 4 cut(s) 438, 477, 861, 911
GlaI GCGC 2 cut(s) 781, 930
GluI GCNGC 3 cut(s) 687, 837, 927
GsaI CCCAGC 3 cut(s) 586, 820, 858
GsuI CTGGAG 1 cut(s) 445
HaeIII GGCC 5 cut(s) 36, 324, 567, 943, 996
HapII CCGG 1 cut(s) 932
HgaI GACGC 2 cut(s) 518, 928
HhaI GCGC 2 cut(s) 782, 931
Hin1II CATG 7 cut(s) 34, 107, 143, 181, 187, 211, 485
Hin6I GCGC 2 cut(s) 780, 929
HinP1I GCGC 2 cut(s) 780, 929
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 3 cut(s) 108, 432, 812
HpaI GTTAAC 1 cut(s) 616
HpaII CCGG 1 cut(s) 932
HphI GGTGA 1 cut(s) 508
Hpy166II GTNNAC 3 cut(s) 366, 616, 764
Hpy188I TCNGA 5 cut(s) 65, 286, 319, 393, 489
Hpy188III TCNNGA 3 cut(s) 140, 773, 911
Hpy8I GTNNAC 3 cut(s) 366, 616, 764
Hpy99I CGWCG 4 cut(s) 534, 973, 976, 979
HpyAV CCTTC 1 cut(s) 409
HpyCH4IV ACGT 1 cut(s) 766
HpyCH4V TGCA 1 cut(s) 836
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 213, 482, 928
HpyF3I CTNAG 4 cut(s) 486, 500, 665, 682
HpySE526I ACGT 1 cut(s) 766
Hsp92II CATG 7 cut(s) 34, 107, 143, 181, 187, 211, 485
HspAI GCGC 2 cut(s) 780, 929
Ksp22I TGATCA 2 cut(s) 142, 286
KspAI GTTAAC 1 cut(s) 616
Kzo9I GATC 9 cut(s) 142, 286, 598, 769, 775, 807, 904, 955, 965
LguI GCTCTTC 1 cut(s) 122
LmnI GCTCC 2 cut(s) 376, 558
Lsp1109I GCAGC 3 cut(s) 698, 848, 913
MaeI CTAG 4 cut(s) 438, 477, 861, 911
MaeII ACGT 1 cut(s) 766
MaeIII GTNAC 2 cut(s) 448, 1024
MalI GATC 9 cut(s) 144, 288, 600, 771, 777, 809, 906, 957, 967
MboI GATC 9 cut(s) 142, 286, 598, 769, 775, 807, 904, 955, 965
MhlI GDGCHC 3 cut(s) 17, 340, 381
MluCI AATT 3 cut(s) 40, 58, 280
MmeI TCCRAC 1 cut(s) 650
MseI TTAA 2 cut(s) 171, 615
MslI CAYNNNNRTG 3 cut(s) 138, 182, 188
MspA1I CMGCKG 2 cut(s) 728, 820
MspI CCGG 1 cut(s) 932
MspR9I CCNGG 1 cut(s) 789
MvaI CCWGG 1 cut(s) 789
MvnI CGCG 1 cut(s) 780
MwoI GCNNNNNNNGC 4 cut(s) 12, 213, 482, 928
NcoI CCATGG 1 cut(s) 177
NdeI CATATG 2 cut(s) 147, 329
NdeII GATC 9 cut(s) 142, 286, 598, 769, 775, 807, 904, 955, 965
NlaIII CATG 7 cut(s) 34, 107, 143, 181, 187, 211, 485
NmuCI GTSAC 1 cut(s) 448
PagI TCATGA 1 cut(s) 139
PceI AGGCCT 1 cut(s) 943
PciSI GCTCTTC 1 cut(s) 122
PcsI WCGNNNNNNNCGW 3 cut(s) 807, 974, 983
PfeI GAWTC 3 cut(s) 108, 432, 812
PkrI GCNGC 3 cut(s) 688, 838, 928
Ppu21I YACGTR 1 cut(s) 767
PpuMI RGGWCCY 1 cut(s) 48
Psp5II RGGWCCY 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 787
PspFI CCCAGC 3 cut(s) 582, 816, 854
PspGI CCWGG 1 cut(s) 787
PspPI GGNCC 4 cut(s) 34, 48, 995, 1013
PspPPI RGGWCCY 1 cut(s) 48
PvuII CAGCTG 2 cut(s) 728, 820
RsaI GTAC 4 cut(s) 55, 94, 670, 900
RsaNI GTAC 4 cut(s) 54, 93, 669, 899
RseI CAYNNNNRTG 3 cut(s) 138, 182, 188
SapI GCTCTTC 1 cut(s) 122
SaqAI TTAA 2 cut(s) 171, 615
SatI GCNGC 3 cut(s) 687, 837, 927
Sau3AI GATC 9 cut(s) 142, 286, 598, 769, 775, 807, 904, 955, 965
Sau96I GGNCC 4 cut(s) 34, 48, 995, 1013
ScaI AGTACT 1 cut(s) 670
ScrFI CCNGG 1 cut(s) 789
SduI GDGCHC 3 cut(s) 17, 340, 381
SfcI CTRYAG 1 cut(s) 733
SinI GGWCC 2 cut(s) 48, 1013
SmiMI CAYNNNNRTG 3 cut(s) 138, 182, 188
SmlI CTYRAG 2 cut(s) 401, 468
SmoI CTYRAG 2 cut(s) 401, 468
SpeI ACTAGT 1 cut(s) 860
Sse9I AATT 3 cut(s) 40, 58, 280
SseBI AGGCCT 1 cut(s) 943
SspI AATATT 5 cut(s) 622, 652, 827, 868, 1009
SspMI CTAG 4 cut(s) 438, 477, 861, 911
StuI AGGCCT 1 cut(s) 943
StyD4I CCNGG 1 cut(s) 787
StyI CCWWGG 1 cut(s) 177
TaiI ACGT 1 cut(s) 769
TaqI TCGA 3 cut(s) 546, 597, 810
TasI AATT 3 cut(s) 40, 58, 280
TatI WGTACW 2 cut(s) 53, 668
TfiI GAWTC 3 cut(s) 108, 432, 812
Tru1I TTAA 2 cut(s) 171, 615
Tru9I TTAA 2 cut(s) 171, 615
TscAI CASTG 1 cut(s) 82
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 3 cut(s) 686, 836, 926
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 5 cut(s) 122, 206, 291, 701, 831
TspGWI ACGGA 1 cut(s) 351
TspRI CASTG 1 cut(s) 82
VpaK11BI GGWCC 2 cut(s) 48, 1013
XagI CCTNNNNNAGG 2 cut(s) 256, 753
XapI RAATTY 2 cut(s) 58, 280
XbaI TCTAGA 1 cut(s) 910
XmiI GTMKAC 1 cut(s) 763
XspI CTAG 4 cut(s) 438, 477, 861, 911
ZrmI AGTACT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.