Rh2DG076600
MYB Family

transcription, DNA-templated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0014417
Physical Location & Seq
Forward (+)
5950250 .. 5952399
2150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG076600.1

Sequence Viewer

Length: 1047 bp
ATGGGCAGAAAGTGCTCACATTGTGGAAACATGGGCCATAATTCAAGGACCTGTACAAATTTCAGAGGCAGTTCCACTGCTGGTTTTGTTGGTACTACTCCTCATGGATTCAGGCTCTTCGGTGTTCAAGTAATTCATCATCATGATCATATGTCATCTTCAGTATCTTCTTTTAATGCCATGGACATGATGATGAAGAAAAGCTTTAGCATGGATTGCTTGCCCACATCTTCAGCCTCATCATCATCCCCATCCTCTTCAAGGATATCCATTGATAATGAAAATTCTGATCATCACAAAGCCTCCATCGGTTATGTCTCTGATGGCCTTATATGTCGTGCCCAAGACAGGAAAAAGGGAGTTCCGTGGACAGAAGAGGAGCACAGAACATTTCTGATGGGGCTTGAGAAGTTAGGGAAGGGCGACTGGAGAGGAATCTCTAGGAACTATGTGACCACAAGAACACCAACTCAAGTTGCTAGTCATGCTCAGAAGTATTTTCTCAGGCAAGCAACCCTCACCAAGAAGAAGCGTCGTTCAAGCCTCTTCGATATGTTTGGGAGCAATAGCCGTAATCCACAATCCCAGCCAAGTAGTATCGATCAAGCTCATTGTGTTAACAATATTCCAACAACCCCACAAAGTCAAAGTAATATTCAGCTTCAACTTAGTACTACTACTACCTCAGCAGCCCAAAATCTAAAACCATCAGTTCATCAGCAAAAACCAGCTGACTACAGCAGTTCTACTCCTCCTTTAGGCAGTATACATGATCATGATCGTGCTCCTGATCGCGCTATGCCTGGATGGATTTACGGGTTGATCGATTCCCAGCTGAAATATTCAAATGCAGCTTCATCATCAAAACCCAGCACTAGTAATATTCCACCACCACCACCATCATCATCAGTAGTACCAGATCATCTAGAGCTGACGCTCGCTGCGCCGGTTGTTAGGCCTTTGGATTTGGATCAAAATAGATCGTCGTCGTCGTCTTCCCCGACATCTGGCCCTCTCCTCAATATTGGACCTATTAGCGTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

348

Amino Acids

37.79

Weight (kDa)

9.51

Isoelectric Point (pI)

59.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 121 - 167 1.1e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014417)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56840
fragaria_vesca FvH4_1g07170 FvH4_1g07170
malus_domestica MD02G1076300.v1.1 MD15G1204700.v1.1
prunus_persica Prupe.7G212300_v2.0.a1
pyrus_communis pycom02g06060 pycom15g18170
rosa_chinensis RchiOBHm_Chr2g0093071
rosa_laevigata RLG00000016365
rosa_roxburghii Rroxscaffold_2G00148540
rosa_rugosa Rorug02G0032200
rosa_samantha Rh2AG077700 Rh2BG079100 Rh2CG081500 Rh2DG076600
rosa_wichuraiana Rw2G006850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 766
AccII CGCG 1 cut(s) 795
AclWI GGATC 1 cut(s) 978
AcsI RAATTY 2 cut(s) 58, 283
AcuI CTGAAG 2 cut(s) 144, 216
AdeI CACNNNGTG 1 cut(s) 23
AfaI GTAC 4 cut(s) 55, 94, 673, 915
AfiI CCNNNNNNNGG 4 cut(s) 261, 348, 758, 1007
AgsI TTSAA 6 cut(s) 45, 128, 261, 540, 665, 846
AhlI ACTAGT 1 cut(s) 875
AjnI CCWGG 1 cut(s) 802
AluBI AGCT 7 cut(s) 204, 608, 661, 731, 835, 854, 931
AluI AGCT 7 cut(s) 204, 608, 661, 731, 835, 854, 931
Alw21I GWGCWC 3 cut(s) 17, 384, 787
Alw26I GTCTC 1 cut(s) 322
AlwI GGATC 1 cut(s) 978
AoxI GGCC 4 cut(s) 34, 325, 956, 1009
ApeKI GCWGC 3 cut(s) 689, 851, 941
ApoI RAATTY 2 cut(s) 58, 283
AspLEI GCGC 2 cut(s) 797, 946
AspS9I GGNCC 4 cut(s) 34, 48, 1010, 1028
AsuHPI GGTGA 1 cut(s) 511
AvaII GGWCC 2 cut(s) 48, 1028
BaeGI GKGCMC 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 987
Bbv12I GWGCWC 3 cut(s) 17, 384, 787
BbvCI CCTCAGC 1 cut(s) 685
BbvI GCAGC 3 cut(s) 701, 863, 928
BccI CCATC 7 cut(s) 259, 314, 317, 391, 715, 801, 907
BceAI ACGGC 1 cut(s) 555
BciT130I CCWGG 1 cut(s) 804
BclI TGATCA 3 cut(s) 145, 289, 772
BcoDI GTCTC 1 cut(s) 322
BcuI ACTAGT 1 cut(s) 875
BfaI CTAG 4 cut(s) 441, 480, 876, 926
BfmI CTRYAG 1 cut(s) 736
BisI GCNGC 3 cut(s) 690, 852, 942
BlsI GCNGC 3 cut(s) 691, 853, 943
BmcAI AGTACT 1 cut(s) 673
Bme1390I CCNGG 1 cut(s) 804
Bme18I GGWCC 2 cut(s) 48, 1028
BmgT120I GGNCC 4 cut(s) 34, 48, 1010, 1028
BmrFI CCNGG 1 cut(s) 804
BpiI GAAGAC 1 cut(s) 987
BpmI CTGGAG 1 cut(s) 448
Bpu10I CCTNAGC 1 cut(s) 685
BpuEI CTTGAG 2 cut(s) 425, 456
Bsa29I ATCGAT 2 cut(s) 600, 825
BsaBI GATNNNNATC 2 cut(s) 777, 969
BsaJI CCNNGG 2 cut(s) 180, 365
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 4 cut(s) 261, 348, 758, 1007
Bse118I RCCGGY 1 cut(s) 946
Bse1I ACTGG 1 cut(s) 431
Bse8I GATNNNNATC 2 cut(s) 777, 969
BseBI CCWGG 1 cut(s) 804
BseCI ATCGAT 2 cut(s) 600, 825
BseDI CCNNGG 2 cut(s) 180, 365
BseGI GGATG 3 cut(s) 245, 251, 812
BseJI GATNNNNATC 2 cut(s) 777, 969
BseLI CCNNNNNNNGG 4 cut(s) 261, 348, 758, 1007
BseMII CTCAG 3 cut(s) 503, 517, 699
BseNI ACTGG 1 cut(s) 431
BseRI GAGGAG 4 cut(s) 90, 392, 741, 1007
BseSI GKGCMC 1 cut(s) 343
BseXI GCAGC 3 cut(s) 701, 863, 928
BseYI CCCAGC 3 cut(s) 585, 831, 869
Bsh1236I CGCG 1 cut(s) 795
BshFI GGCC 4 cut(s) 36, 327, 958, 1011
BshVI ATCGAT 2 cut(s) 600, 825
BsiHKAI GWGCWC 3 cut(s) 17, 384, 787
BsiSI CCGG 1 cut(s) 947
BslI CCNNNNNNNGG 4 cut(s) 261, 348, 758, 1007
BsmAI GTCTC 1 cut(s) 322
BsnI GGCC 4 cut(s) 36, 327, 958, 1011
Bsp1286I GDGCHC 4 cut(s) 17, 343, 384, 787
Bsp1407I TGTACA 1 cut(s) 53
Bsp19I CCATGG 1 cut(s) 180
BspANI GGCC 4 cut(s) 36, 327, 958, 1011
BspCNI CTCAG 3 cut(s) 502, 516, 698
BspDI ATCGAT 2 cut(s) 600, 825
BspFNI CGCG 1 cut(s) 795
BspHI TCATGA 2 cut(s) 142, 775
BspPI GGATC 1 cut(s) 978
BspQI GCTCTTC 1 cut(s) 122
BsrFI RCCGGY 1 cut(s) 946
BsrGI TGTACA 1 cut(s) 53
BsrI ACTGG 1 cut(s) 431
BssAI RCCGGY 1 cut(s) 946
BssECI CCNNGG 2 cut(s) 180, 365
BssNAI GTATAC 1 cut(s) 767
BssT1I CCWWGG 1 cut(s) 180
Bst1107I GTATAC 1 cut(s) 767
Bst2UI CCWGG 1 cut(s) 804
Bst6I CTCTTC 4 cut(s) 122, 262, 369, 551
BstAPI GCANNNNNTGC 2 cut(s) 12, 216
BstAUI TGTACA 1 cut(s) 53
BstC8I GCNNGC 3 cut(s) 221, 510, 939
BstDEI CTNAG 4 cut(s) 489, 503, 668, 685
BstDSI CCRYGG 2 cut(s) 180, 365
BstENI CCTNNNNNAGG 2 cut(s) 259, 756
BstF5I GGATG 3 cut(s) 245, 251, 812
BstFNI CGCG 1 cut(s) 795
BstHHI GCGC 2 cut(s) 797, 946
BstMAI GTCTC 1 cut(s) 322
BstMWI GCNNNNNNNGC 4 cut(s) 12, 216, 485, 943
BstNI CCWGG 1 cut(s) 804
BstSCI CCNGG 1 cut(s) 802
BstSFI CTRYAG 1 cut(s) 736
BstSLI GKGCMC 1 cut(s) 343
BstUI CGCG 1 cut(s) 795
BstV1I GCAGC 3 cut(s) 701, 863, 928
BstV2I GAAGAC 1 cut(s) 987
BstZ17I GTATAC 1 cut(s) 767
Bsu15I ATCGAT 2 cut(s) 600, 825
BsuRI GGCC 4 cut(s) 36, 327, 958, 1011
BsuTUI ATCGAT 2 cut(s) 600, 825
BtgI CCRYGG 2 cut(s) 180, 365
BtsCI GGATG 3 cut(s) 245, 251, 812
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 3 cut(s) 221, 510, 939
CciI TCATGA 2 cut(s) 142, 775
CfoI GCGC 2 cut(s) 797, 946
Cfr10I RCCGGY 1 cut(s) 946
Cfr13I GGNCC 4 cut(s) 34, 48, 1010, 1028
ClaI ATCGAT 2 cut(s) 600, 825
CseI GACGC 2 cut(s) 521, 943
Csp6I GTAC 4 cut(s) 54, 93, 672, 914
CviAII CATG 9 cut(s) 31, 104, 143, 181, 187, 211, 485, 770, 776
CviQI GTAC 4 cut(s) 54, 93, 672, 914
DdeI CTNAG 4 cut(s) 489, 503, 668, 685
DraIII CACNNNGTG 1 cut(s) 23
Eam1104I CTCTTC 4 cut(s) 122, 262, 369, 551
EarI CTCTTC 4 cut(s) 122, 262, 369, 551
Eco130I CCWWGG 1 cut(s) 180
Eco147I AGGCCT 1 cut(s) 958
Eco32I GATATC 1 cut(s) 267
Eco47I GGWCC 2 cut(s) 48, 1028
Eco57I CTGAAG 2 cut(s) 144, 216
EcoNI CCTNNNNNAGG 2 cut(s) 259, 756
EcoO109I RGGNCCY 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 802
EcoRV GATATC 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 9 cut(s) 34, 107, 146, 184, 190, 214, 488, 773, 779
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FatI CATG 9 cut(s) 30, 103, 142, 180, 186, 210, 484, 769, 775
FauNDI CATATG 1 cut(s) 150
FbaI TGATCA 3 cut(s) 145, 289, 772
FblI GTMKAC 1 cut(s) 766
Fnu4HI GCNGC 3 cut(s) 690, 852, 942
FokI GGATG 3 cut(s) 232, 238, 819
Fsp4HI GCNGC 3 cut(s) 690, 852, 942
FspBI CTAG 4 cut(s) 441, 480, 876, 926
GlaI GCGC 2 cut(s) 796, 945
GluI GCNGC 3 cut(s) 690, 852, 942
GsaI CCCAGC 3 cut(s) 589, 835, 873
GsuI CTGGAG 1 cut(s) 448
HaeIII GGCC 4 cut(s) 36, 327, 958, 1011
HapII CCGG 1 cut(s) 947
HgaI GACGC 2 cut(s) 521, 943
HhaI GCGC 2 cut(s) 797, 946
Hin1II CATG 9 cut(s) 34, 107, 146, 184, 190, 214, 488, 773, 779
Hin6I GCGC 2 cut(s) 795, 944
HinP1I GCGC 2 cut(s) 795, 944
HincII GTYRAC 1 cut(s) 619
HindII GTYRAC 1 cut(s) 619
HindIII AAGCTT 1 cut(s) 202
HinfI GANTC 3 cut(s) 108, 435, 827
HpaI GTTAAC 1 cut(s) 619
HpaII CCGG 1 cut(s) 947
HphI GGTGA 1 cut(s) 511
Hpy166II GTNNAC 3 cut(s) 369, 619, 767
Hpy188I TCNGA 5 cut(s) 65, 289, 322, 396, 492
Hpy188III TCNNGA 4 cut(s) 143, 776, 788, 926
Hpy8I GTNNAC 3 cut(s) 369, 619, 767
Hpy99I CGWCG 4 cut(s) 537, 988, 991, 994
HpyAV CCTTC 1 cut(s) 412
HpyCH4V TGCA 1 cut(s) 851
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 216, 485, 943
HpyF3I CTNAG 4 cut(s) 489, 503, 668, 685
Hsp92II CATG 9 cut(s) 34, 107, 146, 184, 190, 214, 488, 773, 779
HspAI GCGC 2 cut(s) 795, 944
Ksp22I TGATCA 3 cut(s) 145, 289, 772
KspAI GTTAAC 1 cut(s) 619
LguI GCTCTTC 1 cut(s) 122
LmnI GCTCC 3 cut(s) 379, 561, 790
Lsp1109I GCAGC 3 cut(s) 701, 863, 928
MaeI CTAG 4 cut(s) 441, 480, 876, 926
MaeIII GTNAC 2 cut(s) 451, 1039
MhlI GDGCHC 4 cut(s) 17, 343, 384, 787
MluCI AATT 4 cut(s) 40, 58, 132, 283
MmeI TCCRAC 1 cut(s) 653
MseI TTAA 2 cut(s) 174, 618
MslI CAYNNNNRTG 5 cut(s) 141, 185, 191, 774, 780
MspA1I CMGCKG 2 cut(s) 731, 835
MspI CCGG 1 cut(s) 947
MspR9I CCNGG 1 cut(s) 804
MvaI CCWGG 1 cut(s) 804
MvnI CGCG 1 cut(s) 795
MwoI GCNNNNNNNGC 4 cut(s) 12, 216, 485, 943
NcoI CCATGG 1 cut(s) 180
NdeI CATATG 1 cut(s) 150
NlaIII CATG 9 cut(s) 34, 107, 146, 184, 190, 214, 488, 773, 779
NmuCI GTSAC 1 cut(s) 451
PagI TCATGA 2 cut(s) 142, 775
PceI AGGCCT 1 cut(s) 958
PciSI GCTCTTC 1 cut(s) 122
PcsI WCGNNNNNNNCGW 3 cut(s) 822, 989, 998
PfeI GAWTC 3 cut(s) 108, 435, 827
PkrI GCNGC 3 cut(s) 691, 853, 943
PpuMI RGGWCCY 1 cut(s) 48
Psp5II RGGWCCY 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 802
PspFI CCCAGC 3 cut(s) 585, 831, 869
PspGI CCWGG 1 cut(s) 802
PspPI GGNCC 4 cut(s) 34, 48, 1010, 1028
PspPPI RGGWCCY 1 cut(s) 48
PvuII CAGCTG 2 cut(s) 731, 835
RsaI GTAC 4 cut(s) 55, 94, 673, 915
RsaNI GTAC 4 cut(s) 54, 93, 672, 914
RseI CAYNNNNRTG 5 cut(s) 141, 185, 191, 774, 780
SapI GCTCTTC 1 cut(s) 122
SaqAI TTAA 2 cut(s) 174, 618
SatI GCNGC 3 cut(s) 690, 852, 942
Sau96I GGNCC 4 cut(s) 34, 48, 1010, 1028
ScaI AGTACT 1 cut(s) 673
ScrFI CCNGG 1 cut(s) 804
SduI GDGCHC 4 cut(s) 17, 343, 384, 787
SfcI CTRYAG 1 cut(s) 736
SinI GGWCC 2 cut(s) 48, 1028
SmiMI CAYNNNNRTG 5 cut(s) 141, 185, 191, 774, 780
SmlI CTYRAG 2 cut(s) 404, 471
SmoI CTYRAG 2 cut(s) 404, 471
SpeI ACTAGT 1 cut(s) 875
Sse9I AATT 4 cut(s) 40, 58, 132, 283
SseBI AGGCCT 1 cut(s) 958
SspI AATATT 5 cut(s) 625, 655, 842, 883, 1024
SspMI CTAG 4 cut(s) 441, 480, 876, 926
StuI AGGCCT 1 cut(s) 958
StyD4I CCNGG 1 cut(s) 802
StyI CCWWGG 1 cut(s) 180
TaqI TCGA 3 cut(s) 549, 600, 825
TasI AATT 4 cut(s) 40, 58, 132, 283
TatI WGTACW 2 cut(s) 53, 671
TfiI GAWTC 3 cut(s) 108, 435, 827
Tru1I TTAA 2 cut(s) 174, 618
Tru9I TTAA 2 cut(s) 174, 618
TscAI CASTG 1 cut(s) 82
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 3 cut(s) 689, 851, 941
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 5 cut(s) 125, 209, 294, 704, 846
TspGWI ACGGA 1 cut(s) 354
TspRI CASTG 1 cut(s) 82
VpaK11BI GGWCC 2 cut(s) 48, 1028
XagI CCTNNNNNAGG 2 cut(s) 259, 756
XapI RAATTY 2 cut(s) 58, 283
XbaI TCTAGA 1 cut(s) 925
XmiI GTMKAC 1 cut(s) 766
XspI CTAG 4 cut(s) 441, 480, 876, 926
ZrmI AGTACT 1 cut(s) 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.