MD15G1204700.v1.1
MYB Family

transcription, DNA-templated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014417
Physical Location & Seq
Forward (+)
16281737 .. 16283684
1948 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1204700.v1.1.491

Sequence Viewer

Length: 960 bp
ATGGGCAGAAAGTGCTCACATTGTGGAAACATAGGCCACAACTCTAGGACCTGCACAAATTTCAGAGGCACTCCTAGTAGTACTAGTTTTGTTGGATTTAGGCTCTTCGGTGTCCAACTTCACCATGATCACCATCATATCGTGATGTCTTCATCTAACATGAACAGTAATTCTGCTAATCATCATGTTGCCATGTCCATGAAGAAAAGTTACAGCACGGATTGCTTGCCGACAACGTCGTCAGCCTCTTCATCTTCCCCATCTAACTCTTCATTGTCTCCTTCAAGACTTTCCATGGAGGAAAATATTTGTGCAGCAGATAAAGCCTCCATCGGCTATCTCTCCGACGGTCTCATATGCCGAGCCCAAGAAAGGAAGAAGGGAGTTCCATGGACGGAAGAGGAGCACCGGACGTTCCTAATCGGACTCGAGAAGTTAGGAAAGGGTGACTGGAGAGGCATCTCTAGGAATTATGTGACCACAAGAACCCCAACCCAAGTTGCAAGTCATGCTCAGAAGTATTTTCTCAGGCAAGCAAGCCTCACCAAAAAGAAGCGACGTTCTAGCCTCTTCGATATGTTTGGGAGCAGCAACAATATAAATATGGCAACTTATGATCCAATTCCTACTCAACGTGACAATATTATTCATGGTGACATGGCCATTGATACCAGCACACTGCCTCCGCTTCAACGTAGCACTGCAGCAAAAAATCTAAAATCAGATCACAATCAAAAACCTCCAGTCAGTAGGACTACTACTCAGCAGCTGCCGGCTTGGATTTACGGGTTGATCGATTCCCAGATGAAATCGAGTTCATCTTCGAGTGAAGCGTCAGTAGTACCGGATCTAGAGCTCACGCTTGCCGCGCCAACTAGTCCTAATTTGGAACAACAAAATAATTCATCCCCAACCCCAGCAGGTCCCCTCCTTAATCTTGGAAGAATTAGTGTCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

320

Amino Acids

34.87

Weight (kDa)

9.51

Isoelectric Point (pI)

58.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 129 - 175 6.9e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014417)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56840
fragaria_vesca FvH4_1g07170 FvH4_1g07170
malus_domestica MD02G1076300.v1.1 MD15G1204700.v1.1
prunus_persica Prupe.7G212300_v2.0.a1
pyrus_communis pycom02g06060 pycom15g18170
rosa_chinensis RchiOBHm_Chr2g0093071
rosa_laevigata RLG00000016365
rosa_roxburghii Rroxscaffold_2G00148540
rosa_rugosa Rorug02G0032200
rosa_samantha Rh2AG077700 Rh2BG079100 Rh2CG081500 Rh2DG076600
rosa_wichuraiana Rw2G006850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 238
Acc36I ACCTGC 2 cut(s) 59, 911
AccII CGCG 1 cut(s) 869
AciI CCGC 2 cut(s) 686, 867
AclWI GGATC 2 cut(s) 611, 855
AcoI YGGCCR 1 cut(s) 660
AcsI RAATTY 1 cut(s) 58
AdeI CACNNNGTG 1 cut(s) 23
AfaI GTAC 2 cut(s) 82, 843
AfiI CCNNNNNNNGG 1 cut(s) 372
AgsI TTSAA 2 cut(s) 285, 692
AhlI ACTAGT 2 cut(s) 83, 875
AluBI AGCT 2 cut(s) 769, 856
AluI AGCT 2 cut(s) 769, 856
Alw21I GWGCWC 3 cut(s) 17, 408, 858
Alw26I GTCTC 2 cut(s) 282, 356
AlwI GGATC 2 cut(s) 611, 855
AlwNI CAGNNNCTG 1 cut(s) 769
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 2 cut(s) 34, 660
ApeKI GCWGC 5 cut(s) 314, 588, 704, 766, 769
ApoI RAATTY 1 cut(s) 58
AspLEI GCGC 1 cut(s) 871
AspS9I GGNCC 2 cut(s) 48, 923
AsuHPI GGTGA 5 cut(s) 113, 122, 458, 535, 665
AvaI CYCGRG 1 cut(s) 428
AvaII GGWCC 2 cut(s) 48, 923
BalI TGGCCA 1 cut(s) 662
BanII GRGCYC 2 cut(s) 367, 858
BarI GAAGNNNNNNTAC 2 cut(s) 194, 226
BbsI GAAGAC 1 cut(s) 141
Bbv12I GWGCWC 3 cut(s) 17, 408, 858
BbvI GCAGC 5 cut(s) 326, 600, 716, 756, 778
BccI CCATC 3 cut(s) 141, 268, 338
BclI TGATCA 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 282, 356
BcuI ACTAGT 2 cut(s) 83, 875
BfaI CTAG 7 cut(s) 45, 75, 84, 465, 564, 851, 876
BfmI CTRYAG 1 cut(s) 702
BfuAI ACCTGC 2 cut(s) 59, 911
BisI GCNGC 6 cut(s) 315, 589, 705, 767, 770, 867
BlsI GCNGC 6 cut(s) 316, 590, 706, 768, 771, 868
BmcAI AGTACT 1 cut(s) 82
Bme18I GGWCC 2 cut(s) 48, 923
BmeT110I CYCGRG 1 cut(s) 428
BmgT120I GGNCC 2 cut(s) 48, 923
BmiI GGNNCC 1 cut(s) 925
BmsI GCATC 1 cut(s) 468
BpiI GAAGAC 1 cut(s) 141
BpmI CTGGAG 2 cut(s) 472, 726
Bsa29I ATCGAT 1 cut(s) 795
BsaBI GATNNNNATC 2 cut(s) 132, 729
BsaI GGTCTC 1 cut(s) 356
BsaJI CCNNGG 2 cut(s) 294, 389
BsaWI WCCGGW 2 cut(s) 408, 844
BsaXI ACNNNNNCTCC 2 cut(s) 667, 697
Bsc4I CCNNNNNNNGG 1 cut(s) 372
Bse118I RCCGGY 1 cut(s) 772
Bse1I ACTGG 2 cut(s) 455, 743
Bse8I GATNNNNATC 2 cut(s) 132, 729
BseCI ATCGAT 1 cut(s) 795
BseDI CCNNGG 2 cut(s) 294, 389
BseGI GGATG 1 cut(s) 905
BseJI GATNNNNATC 2 cut(s) 132, 729
BseLI CCNNNNNNNGG 1 cut(s) 372
BseMII CTCAG 3 cut(s) 527, 541, 776
BseNI ACTGG 2 cut(s) 455, 743
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 5 cut(s) 326, 600, 716, 756, 778
BseYI CCCAGC 1 cut(s) 916
BsgI GTGCAG 2 cut(s) 37, 333
Bsh1236I CGCG 1 cut(s) 869
BshFI GGCC 2 cut(s) 36, 662
BshVI ATCGAT 1 cut(s) 795
BsiHKAI GWGCWC 3 cut(s) 17, 408, 858
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 3 cut(s) 409, 773, 845
BslFI GGGAC 1 cut(s) 909
BslI CCNNNNNNNGG 1 cut(s) 372
BsmAI GTCTC 2 cut(s) 282, 356
BsmFI GGGAC 1 cut(s) 909
BsnI GGCC 2 cut(s) 36, 662
Bso31I GGTCTC 1 cut(s) 356
BsoBI CYCGRG 1 cut(s) 428
Bsp1286I GDGCHC 4 cut(s) 17, 367, 408, 858
Bsp143I GATC 5 cut(s) 127, 616, 724, 792, 847
Bsp19I CCATGG 2 cut(s) 294, 389
BspACI CCGC 2 cut(s) 686, 867
BspANI GGCC 2 cut(s) 36, 662
BspCNI CTCAG 3 cut(s) 526, 540, 775
BspDI ATCGAT 1 cut(s) 795
BspFNI CGCG 1 cut(s) 869
BspLI GGNNCC 1 cut(s) 925
BspMAI CTGCAG 1 cut(s) 706
BspMI ACCTGC 2 cut(s) 59, 911
BspPI GGATC 2 cut(s) 611, 855
BspQI GCTCTTC 1 cut(s) 110
BspTNI GGTCTC 1 cut(s) 356
BsrFI RCCGGY 1 cut(s) 772
BsrI ACTGG 2 cut(s) 455, 743
BssAI RCCGGY 1 cut(s) 772
BssECI CCNNGG 2 cut(s) 294, 389
BssMI GATC 5 cut(s) 127, 616, 724, 792, 847
BssT1I CCWWGG 2 cut(s) 294, 389
Bst4CI ACNGT 2 cut(s) 167, 350
Bst6I CTCTTC 5 cut(s) 110, 253, 274, 393, 575
BstAPI GCANNNNNTGC 3 cut(s) 12, 222, 509
BstC8I GCNNGC 5 cut(s) 227, 534, 538, 774, 864
BstDEI CTNAG 3 cut(s) 513, 527, 762
BstDSI CCRYGG 2 cut(s) 294, 389
BstF5I GGATG 1 cut(s) 905
BstFNI CGCG 1 cut(s) 869
BstHHI GCGC 1 cut(s) 871
BstKTI GATC 5 cut(s) 130, 619, 727, 795, 850
BstMAI GTCTC 2 cut(s) 282, 356
BstMBI GATC 5 cut(s) 127, 616, 724, 792, 847
BstMWI GCNNNNNNNGC 5 cut(s) 12, 222, 323, 509, 868
BstSFI CTRYAG 1 cut(s) 702
BstUI CGCG 1 cut(s) 869
BstV1I GCAGC 5 cut(s) 326, 600, 716, 756, 778
BstV2I GAAGAC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 847
BstYI RGATCY 1 cut(s) 847
Bsu15I ATCGAT 1 cut(s) 795
BsuRI GGCC 2 cut(s) 36, 662
BsuTUI ATCGAT 1 cut(s) 795
BtgI CCRYGG 2 cut(s) 294, 389
BtsCI GGATG 1 cut(s) 905
BtsI GCAGTG 2 cut(s) 677, 699
BtsIMutI CAGTG 2 cut(s) 677, 699
BveI ACCTGC 2 cut(s) 59, 911
Cac8I GCNNGC 5 cut(s) 227, 534, 538, 774, 864
CaiI CAGNNNCTG 1 cut(s) 769
CfoI GCGC 1 cut(s) 871
Cfr10I RCCGGY 1 cut(s) 772
Cfr13I GGNCC 2 cut(s) 48, 923
ClaI ATCGAT 1 cut(s) 795
CseI GACGC 1 cut(s) 822
Csp6I GTAC 2 cut(s) 81, 842
CviQI GTAC 2 cut(s) 81, 842
DdeI CTNAG 3 cut(s) 513, 527, 762
DpnI GATC 5 cut(s) 129, 618, 726, 794, 849
DpnII GATC 5 cut(s) 127, 616, 724, 792, 847
DraIII CACNNNGTG 1 cut(s) 23
DrdI GACNNNNNNGTC 1 cut(s) 238
DseDI GACNNNNNNGTC 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 660
Eam1104I CTCTTC 5 cut(s) 110, 253, 274, 393, 575
EarI CTCTTC 5 cut(s) 110, 253, 274, 393, 575
Ecl136II GAGCTC 1 cut(s) 856
Eco130I CCWWGG 2 cut(s) 294, 389
Eco24I GRGCYC 2 cut(s) 367, 858
Eco31I GGTCTC 1 cut(s) 356
Eco47I GGWCC 2 cut(s) 48, 923
Eco53kI GAGCTC 1 cut(s) 856
Eco88I CYCGRG 1 cut(s) 428
EcoICRI GAGCTC 1 cut(s) 856
EcoO109I RGGNCCY 2 cut(s) 48, 923
EcoT14I CCWWGG 2 cut(s) 294, 389
EcoT38I GRGCYC 2 cut(s) 367, 858
ErhI CCWWGG 2 cut(s) 294, 389
FaqI GGGAC 1 cut(s) 909
FauNDI CATATG 1 cut(s) 356
FbaI TGATCA 1 cut(s) 127
Fnu4HI GCNGC 6 cut(s) 315, 589, 705, 767, 770, 867
FokI GGATG 1 cut(s) 892
FriOI GRGCYC 2 cut(s) 367, 858
Fsp4HI GCNGC 6 cut(s) 315, 589, 705, 767, 770, 867
FspBI CTAG 7 cut(s) 45, 75, 84, 465, 564, 851, 876
GlaI GCGC 1 cut(s) 870
GluI GCNGC 6 cut(s) 315, 589, 705, 767, 770, 867
GsaI CCCAGC 1 cut(s) 920
GsuI CTGGAG 2 cut(s) 472, 726
HaeIII GGCC 2 cut(s) 36, 662
HapII CCGG 3 cut(s) 409, 773, 845
HgaI GACGC 1 cut(s) 822
HhaI GCGC 1 cut(s) 871
Hin6I GCGC 1 cut(s) 869
HinP1I GCGC 1 cut(s) 869
HinfI GANTC 2 cut(s) 426, 797
HpaII CCGG 3 cut(s) 409, 773, 845
HphI GGTGA 5 cut(s) 113, 122, 458, 535, 665
Hpy188I TCNGA 5 cut(s) 65, 346, 425, 516, 724
Hpy188III TCNNGA 4 cut(s) 142, 285, 430, 851
Hpy99I CGWCG 3 cut(s) 241, 350, 561
HpyAV CCTTC 2 cut(s) 291, 373
HpyCH4III ACNGT 2 cut(s) 167, 350
HpyCH4IV ACGT 5 cut(s) 236, 413, 559, 634, 694
HpyCH4V TGCA 4 cut(s) 54, 314, 503, 704
HpyF10VI GCNNNNNNNGC 5 cut(s) 12, 222, 323, 509, 868
HpyF3I CTNAG 3 cut(s) 513, 527, 762
HpySE526I ACGT 5 cut(s) 236, 413, 559, 634, 694
HspAI GCGC 1 cut(s) 869
KroI GCCGGC 1 cut(s) 772
KroNI GCCGGC 1 cut(s) 774
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 5 cut(s) 127, 616, 724, 792, 847
LguI GCTCTTC 1 cut(s) 110
LmnI GCTCC 2 cut(s) 403, 585
Lsp1109I GCAGC 5 cut(s) 326, 600, 716, 756, 778
LweI GCATC 1 cut(s) 468
MaeI CTAG 7 cut(s) 45, 75, 84, 465, 564, 851, 876
MaeII ACGT 5 cut(s) 236, 413, 559, 634, 694
MaeIII GTNAC 6 cut(s) 209, 446, 475, 635, 653, 952
MalI GATC 5 cut(s) 129, 618, 726, 794, 849
MboI GATC 5 cut(s) 127, 616, 724, 792, 847
MflI RGATCY 1 cut(s) 847
MhlI GDGCHC 4 cut(s) 17, 367, 408, 858
MlsI TGGCCA 1 cut(s) 662
MluCI AATT 7 cut(s) 58, 169, 469, 621, 883, 901, 945
MluNI TGGCCA 1 cut(s) 662
MlyI GAGTC 1 cut(s) 420
MmeI TCCRAC 3 cut(s) 73, 139, 369
Mox20I TGGCCA 1 cut(s) 662
MroNI GCCGGC 1 cut(s) 772
MscI TGGCCA 1 cut(s) 662
MseI TTAA 1 cut(s) 933
MslI CAYNNNNRTG 1 cut(s) 197
Msp20I TGGCCA 1 cut(s) 662
MspA1I CMGCKG 1 cut(s) 769
MspI CCGG 3 cut(s) 409, 773, 845
MvnI CGCG 1 cut(s) 869
MwoI GCNNNNNNNGC 5 cut(s) 12, 222, 323, 509, 868
NaeI GCCGGC 1 cut(s) 774
NcoI CCATGG 2 cut(s) 294, 389
NdeI CATATG 1 cut(s) 356
NdeII GATC 5 cut(s) 127, 616, 724, 792, 847
NgoMIV GCCGGC 1 cut(s) 772
NlaIV GGNNCC 1 cut(s) 925
NmeAIII GCCGAG 1 cut(s) 386
NmuCI GTSAC 5 cut(s) 446, 475, 635, 653, 952
PaeR7I CTCGAG 1 cut(s) 428
PciSI GCTCTTC 1 cut(s) 110
PcsI WCGNNNNNNNCGW 2 cut(s) 792, 830
PdiI GCCGGC 1 cut(s) 774
PfeI GAWTC 1 cut(s) 797
PflFI GACNNNGTC 1 cut(s) 235
PkrI GCNGC 6 cut(s) 316, 590, 706, 768, 771, 868
PleI GAGTC 1 cut(s) 420
PpsI GAGTC 1 cut(s) 420
PpuMI RGGWCCY 2 cut(s) 48, 923
Psp124BI GAGCTC 1 cut(s) 858
Psp5II RGGWCCY 2 cut(s) 48, 923
PspFI CCCAGC 1 cut(s) 916
PspN4I GGNNCC 1 cut(s) 925
PspPI GGNCC 2 cut(s) 48, 923
PspPPI RGGWCCY 2 cut(s) 48, 923
PstI CTGCAG 1 cut(s) 706
PstNI CAGNNNCTG 1 cut(s) 769
PsuI RGATCY 1 cut(s) 847
PsyI GACNNNGTC 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 769
RsaI GTAC 2 cut(s) 82, 843
RsaNI GTAC 2 cut(s) 81, 842
RseI CAYNNNNRTG 1 cut(s) 197
SacI GAGCTC 1 cut(s) 858
SapI GCTCTTC 1 cut(s) 110
SaqAI TTAA 1 cut(s) 933
SatI GCNGC 6 cut(s) 315, 589, 705, 767, 770, 867
Sau3AI GATC 5 cut(s) 127, 616, 724, 792, 847
Sau96I GGNCC 2 cut(s) 48, 923
ScaI AGTACT 1 cut(s) 82
SchI GAGTC 1 cut(s) 420
SduI GDGCHC 4 cut(s) 17, 367, 408, 858
SfaNI GCATC 1 cut(s) 468
SfcI CTRYAG 1 cut(s) 702
Sfr274I CTCGAG 1 cut(s) 428
SinI GGWCC 2 cut(s) 48, 923
SlaI CTCGAG 1 cut(s) 428
SmiMI CAYNNNNRTG 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
SpeI ACTAGT 2 cut(s) 83, 875
Sse9I AATT 7 cut(s) 58, 169, 469, 621, 883, 901, 945
SsiI CCGC 2 cut(s) 686, 867
SspI AATATT 2 cut(s) 307, 643
SspMI CTAG 7 cut(s) 45, 75, 84, 465, 564, 851, 876
SstI GAGCTC 1 cut(s) 858
StyI CCWWGG 2 cut(s) 294, 389
TaaI ACNGT 2 cut(s) 167, 350
TaiI ACGT 5 cut(s) 239, 416, 562, 637, 697
TaqI TCGA 5 cut(s) 429, 573, 795, 812, 824
TasI AATT 7 cut(s) 58, 169, 469, 621, 883, 901, 945
TatI WGTACW 1 cut(s) 80
TauI GCSGC 1 cut(s) 869
TfiI GAWTC 1 cut(s) 797
Tru1I TTAA 1 cut(s) 933
Tru9I TTAA 1 cut(s) 933
TscAI CASTG 2 cut(s) 684, 706
TseFI GTSAC 5 cut(s) 446, 475, 635, 653, 952
TseI GCWGC 5 cut(s) 314, 588, 704, 766, 769
Tsp45I GTSAC 5 cut(s) 446, 475, 635, 653, 952
TspDTI ATGAA 9 cut(s) 141, 176, 215, 240, 261, 638, 807, 821, 894
TspGWI ACGGA 2 cut(s) 233, 410
TspRI CASTG 2 cut(s) 684, 706
Tth111I GACNNNGTC 1 cut(s) 235
VpaK11BI GGWCC 2 cut(s) 48, 923
XapI RAATTY 1 cut(s) 58
XbaI TCTAGA 1 cut(s) 850
XhoI CTCGAG 1 cut(s) 428
XspI CTAG 7 cut(s) 45, 75, 84, 465, 564, 851, 876
ZrmI AGTACT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.