Rroxscaffold_2G00148540
MYB Family

transcription, DNA-templated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014417
Physical Location & Seq
Reverse (-)
86206586 .. 86208175
1590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00148540.1

Sequence Viewer

Length: 1041 bp
ATGGGCAGAAAGTGCTCACATTGTGGAAACATGGGCCATAATTCAAGGACCTGTACAAATTTCAGAGGCAGTTCCACTGCTGGTTTTGTTGGTACCATTCCTCATGGATTCAGGCTCTTCGGTGTTCAAGTTCATCATCATGATCATATGTCATCTTCAGTATCTTCTTTTAATGCCATGAACATGATGATGAAGAAAAGCTTTAGCATGGATTGCTTGCCCACATCTTCAGCCTCATCATCATCCCCATCTTCTTCAAGGATATCCATTGATAATGAAAATTCTGATCATCATAAAGCCTCCATCGGTTATGTCTCTGATGGCCTCATATGTCGTGCCCAAGACAGGAAAAAGGGAGTTCCGTGGACGGAAGAGGAGCACAGAACATTTCTGATGGGGCTTGAGAAGTTAGGGAAGGGGGACTGGAGAGGAATCTCTAGGAACTATGTGACCACAAGAACACCAACTCAAGTTGCTAGTCATGCTCAGAAGTATTTTCTCAGGCAAGCAACCCTCACCAAGAAGAAGCGTCGTTCAAGCCTCTTCGATATGTTTGGGAGCAATAGCCGTAATCCACAATCCCAGCCAAGTAGTATCGATCAAGCTCATTGTGTTAACAATATTCCGACAAACCCACAAAGTCAAAGTAATATTCAGCTTCGACTTAGTAGCACTACAACCTCAGCAGCCCAAAATCTAAAACCATCAGTTCATCAGCAAAAACCAGCTGACTACAGCAGTTCTACTCCTCCTTTAGGCAGTATACATGATCATGATCGTGCTCCTGATCGCGCTATGCCTGTATGGATTTACGGGTTGATCGATTCCCAGCTGAAATATTCAAATGCAGCTTCATCATCAAAACCCAGCACTAGTAATATTCCACCACCACCACCATCATCATCAGTAGTACCAGATCATCTAGAGCTGACGCTCGCTGCGCCGGTTAGGCCTTTGGATTTGGATCAAAATAGATCGTCATCGTCGTCATCCCCGACATCTGGCCCTCTCCTCAATATTGGACCTATTAGTGTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

346

Amino Acids

37.66

Weight (kDa)

9.67

Isoelectric Point (pI)

59.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 120 - 166 1e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014417)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56840
fragaria_vesca FvH4_1g07170 FvH4_1g07170
malus_domestica MD02G1076300.v1.1 MD15G1204700.v1.1
prunus_persica Prupe.7G212300_v2.0.a1
pyrus_communis pycom02g06060 pycom15g18170
rosa_chinensis RchiOBHm_Chr2g0093071
rosa_laevigata RLG00000016365
rosa_roxburghii Rroxscaffold_2G00148540
rosa_rugosa Rorug02G0032200
rosa_samantha Rh2AG077700 Rh2BG079100 Rh2CG081500 Rh2DG076600
rosa_wichuraiana Rw2G006850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 92
AccB1I GGYRCC 1 cut(s) 92
AccI GTMKAC 1 cut(s) 763
AccII CGCG 1 cut(s) 792
AclWI GGATC 1 cut(s) 972
AcsI RAATTY 2 cut(s) 58, 280
AcuI CTGAAG 2 cut(s) 141, 213
AdeI CACNNNGTG 1 cut(s) 23
AfaI GTAC 3 cut(s) 55, 94, 912
AfiI CCNNNNNNNGG 3 cut(s) 345, 755, 1001
AgsI TTSAA 5 cut(s) 45, 128, 258, 537, 843
AhlI ACTAGT 1 cut(s) 872
AluBI AGCT 7 cut(s) 201, 605, 658, 728, 832, 851, 928
AluI AGCT 7 cut(s) 201, 605, 658, 728, 832, 851, 928
Alw21I GWGCWC 3 cut(s) 17, 381, 784
Alw26I GTCTC 1 cut(s) 319
AlwI GGATC 1 cut(s) 972
AoxI GGCC 4 cut(s) 34, 322, 950, 1003
ApeKI GCWGC 3 cut(s) 686, 848, 938
ApoI RAATTY 2 cut(s) 58, 280
Asp718I GGTACC 1 cut(s) 92
AspLEI GCGC 2 cut(s) 794, 943
AspS9I GGNCC 4 cut(s) 34, 48, 1004, 1022
AsuHPI GGTGA 1 cut(s) 508
AvaII GGWCC 2 cut(s) 48, 1022
BaeGI GKGCMC 1 cut(s) 340
BanI GGYRCC 1 cut(s) 92
Bbv12I GWGCWC 3 cut(s) 17, 381, 784
BbvCI CCTCAGC 1 cut(s) 682
BbvI GCAGC 3 cut(s) 698, 860, 925
BccI CCATC 6 cut(s) 256, 311, 314, 388, 712, 904
BceAI ACGGC 1 cut(s) 552
BclI TGATCA 3 cut(s) 142, 286, 769
BcoDI GTCTC 1 cut(s) 319
BcuI ACTAGT 1 cut(s) 872
BfaI CTAG 4 cut(s) 438, 477, 873, 923
BfmI CTRYAG 1 cut(s) 733
BglI GCCNNNNNGGC 1 cut(s) 949
BisI GCNGC 3 cut(s) 687, 849, 939
BlsI GCNGC 3 cut(s) 688, 850, 940
Bme18I GGWCC 2 cut(s) 48, 1022
BmgT120I GGNCC 4 cut(s) 34, 48, 1004, 1022
BmiI GGNNCC 1 cut(s) 94
BpmI CTGGAG 1 cut(s) 445
Bpu10I CCTNAGC 1 cut(s) 682
BpuEI CTTGAG 2 cut(s) 422, 453
Bsa29I ATCGAT 2 cut(s) 597, 822
BsaBI GATNNNNATC 3 cut(s) 774, 963, 979
BsaJI CCNNGG 1 cut(s) 362
Bsc4I CCNNNNNNNGG 3 cut(s) 345, 755, 1001
Bse118I RCCGGY 1 cut(s) 943
Bse1I ACTGG 1 cut(s) 428
Bse8I GATNNNNATC 3 cut(s) 774, 963, 979
BseCI ATCGAT 2 cut(s) 597, 822
BseDI CCNNGG 1 cut(s) 362
BseGI GGATG 2 cut(s) 242, 989
BseJI GATNNNNATC 3 cut(s) 774, 963, 979
BseLI CCNNNNNNNGG 3 cut(s) 345, 755, 1001
BseMII CTCAG 3 cut(s) 500, 514, 696
BseNI ACTGG 1 cut(s) 428
BseRI GAGGAG 3 cut(s) 389, 738, 1001
BseSI GKGCMC 1 cut(s) 340
BseXI GCAGC 3 cut(s) 698, 860, 925
BseYI CCCAGC 3 cut(s) 582, 828, 866
Bsh1236I CGCG 1 cut(s) 792
BshFI GGCC 4 cut(s) 36, 324, 952, 1005
BshNI GGYRCC 1 cut(s) 92
BshVI ATCGAT 2 cut(s) 597, 822
BsiHKAI GWGCWC 3 cut(s) 17, 381, 784
BsiSI CCGG 1 cut(s) 944
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 3 cut(s) 345, 755, 1001
BsmAI GTCTC 1 cut(s) 319
BsmFI GGGAC 1 cut(s) 434
BsnI GGCC 4 cut(s) 36, 324, 952, 1005
Bsp1286I GDGCHC 4 cut(s) 17, 340, 381, 784
Bsp1407I TGTACA 1 cut(s) 53
BspANI GGCC 4 cut(s) 36, 324, 952, 1005
BspCNI CTCAG 3 cut(s) 499, 513, 695
BspDI ATCGAT 2 cut(s) 597, 822
BspFNI CGCG 1 cut(s) 792
BspHI TCATGA 2 cut(s) 139, 772
BspLI GGNNCC 1 cut(s) 94
BspPI GGATC 1 cut(s) 972
BspQI GCTCTTC 1 cut(s) 122
BspT107I GGYRCC 1 cut(s) 92
BsrFI RCCGGY 1 cut(s) 943
BsrGI TGTACA 1 cut(s) 53
BsrI ACTGG 1 cut(s) 428
BssAI RCCGGY 1 cut(s) 943
BssECI CCNNGG 1 cut(s) 362
BssNAI GTATAC 1 cut(s) 764
Bst1107I GTATAC 1 cut(s) 764
Bst6I CTCTTC 3 cut(s) 122, 366, 548
BstAPI GCANNNNNTGC 2 cut(s) 12, 213
BstAUI TGTACA 1 cut(s) 53
BstC8I GCNNGC 3 cut(s) 218, 507, 936
BstDEI CTNAG 4 cut(s) 486, 500, 665, 682
BstDSI CCRYGG 1 cut(s) 362
BstENI CCTNNNNNAGG 1 cut(s) 753
BstF5I GGATG 2 cut(s) 242, 989
BstFNI CGCG 1 cut(s) 792
BstHHI GCGC 2 cut(s) 794, 943
BstMAI GTCTC 1 cut(s) 319
BstMWI GCNNNNNNNGC 5 cut(s) 12, 213, 482, 940, 949
BstSFI CTRYAG 1 cut(s) 733
BstSLI GKGCMC 1 cut(s) 340
BstUI CGCG 1 cut(s) 792
BstV1I GCAGC 3 cut(s) 698, 860, 925
BstZ17I GTATAC 1 cut(s) 764
Bsu15I ATCGAT 2 cut(s) 597, 822
BsuRI GGCC 4 cut(s) 36, 324, 952, 1005
BsuTUI ATCGAT 2 cut(s) 597, 822
BtgI CCRYGG 1 cut(s) 362
BtsCI GGATG 2 cut(s) 242, 989
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 3 cut(s) 218, 507, 936
CciI TCATGA 2 cut(s) 139, 772
CfoI GCGC 2 cut(s) 794, 943
Cfr10I RCCGGY 1 cut(s) 943
Cfr13I GGNCC 4 cut(s) 34, 48, 1004, 1022
ClaI ATCGAT 2 cut(s) 597, 822
CseI GACGC 2 cut(s) 518, 940
Csp6I GTAC 3 cut(s) 54, 93, 911
CviAII CATG 9 cut(s) 31, 104, 140, 178, 184, 208, 482, 767, 773
CviQI GTAC 3 cut(s) 54, 93, 911
DdeI CTNAG 4 cut(s) 486, 500, 665, 682
DraIII CACNNNGTG 1 cut(s) 23
Eam1104I CTCTTC 3 cut(s) 122, 366, 548
EarI CTCTTC 3 cut(s) 122, 366, 548
Eco147I AGGCCT 1 cut(s) 952
Eco32I GATATC 1 cut(s) 264
Eco47I GGWCC 2 cut(s) 48, 1022
Eco57I CTGAAG 2 cut(s) 141, 213
EcoNI CCTNNNNNAGG 1 cut(s) 753
EcoO109I RGGNCCY 1 cut(s) 48
EcoRV GATATC 1 cut(s) 264
FaeI CATG 9 cut(s) 34, 107, 143, 181, 187, 211, 485, 770, 776
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FaqI GGGAC 1 cut(s) 434
FatI CATG 9 cut(s) 30, 103, 139, 177, 183, 207, 481, 766, 772
FauNDI CATATG 2 cut(s) 147, 329
FbaI TGATCA 3 cut(s) 142, 286, 769
FblI GTMKAC 1 cut(s) 763
Fnu4HI GCNGC 3 cut(s) 687, 849, 939
FokI GGATG 2 cut(s) 229, 976
Fsp4HI GCNGC 3 cut(s) 687, 849, 939
FspBI CTAG 4 cut(s) 438, 477, 873, 923
GlaI GCGC 2 cut(s) 793, 942
GluI GCNGC 3 cut(s) 687, 849, 939
GsaI CCCAGC 3 cut(s) 586, 832, 870
GsuI CTGGAG 1 cut(s) 445
HaeIII GGCC 4 cut(s) 36, 324, 952, 1005
HapII CCGG 1 cut(s) 944
HgaI GACGC 2 cut(s) 518, 940
HhaI GCGC 2 cut(s) 794, 943
Hin1II CATG 9 cut(s) 34, 107, 143, 181, 187, 211, 485, 770, 776
Hin6I GCGC 2 cut(s) 792, 941
HinP1I GCGC 2 cut(s) 792, 941
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 3 cut(s) 108, 432, 824
HpaI GTTAAC 1 cut(s) 616
HpaII CCGG 1 cut(s) 944
HphI GGTGA 1 cut(s) 508
Hpy166II GTNNAC 3 cut(s) 366, 616, 764
Hpy188I TCNGA 6 cut(s) 65, 286, 319, 393, 489, 627
Hpy188III TCNNGA 4 cut(s) 140, 773, 785, 923
Hpy8I GTNNAC 3 cut(s) 366, 616, 764
Hpy99I CGWCG 2 cut(s) 534, 988
HpyAV CCTTC 1 cut(s) 409
HpyCH4V TGCA 1 cut(s) 848
HpyF10VI GCNNNNNNNGC 5 cut(s) 12, 213, 482, 940, 949
HpyF3I CTNAG 4 cut(s) 486, 500, 665, 682
Hsp92II CATG 9 cut(s) 34, 107, 143, 181, 187, 211, 485, 770, 776
HspAI GCGC 2 cut(s) 792, 941
KpnI GGTACC 1 cut(s) 96
Ksp22I TGATCA 3 cut(s) 142, 286, 769
KspAI GTTAAC 1 cut(s) 616
LguI GCTCTTC 1 cut(s) 122
LmnI GCTCC 3 cut(s) 376, 558, 787
Lsp1109I GCAGC 3 cut(s) 698, 860, 925
MaeI CTAG 4 cut(s) 438, 477, 873, 923
MaeIII GTNAC 2 cut(s) 448, 1033
MhlI GDGCHC 4 cut(s) 17, 340, 381, 784
MluCI AATT 3 cut(s) 40, 58, 280
MmeI TCCRAC 1 cut(s) 650
MseI TTAA 2 cut(s) 171, 615
MslI CAYNNNNRTG 5 cut(s) 138, 182, 188, 771, 777
MspA1I CMGCKG 2 cut(s) 728, 832
MspI CCGG 1 cut(s) 944
MvnI CGCG 1 cut(s) 792
MwoI GCNNNNNNNGC 5 cut(s) 12, 213, 482, 940, 949
NdeI CATATG 2 cut(s) 147, 329
NlaIII CATG 9 cut(s) 34, 107, 143, 181, 187, 211, 485, 770, 776
NlaIV GGNNCC 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 448
PagI TCATGA 2 cut(s) 139, 772
PceI AGGCCT 1 cut(s) 952
PciSI GCTCTTC 1 cut(s) 122
PcsI WCGNNNNNNNCGW 3 cut(s) 819, 983, 992
PfeI GAWTC 3 cut(s) 108, 432, 824
PkrI GCNGC 3 cut(s) 688, 850, 940
PpuMI RGGWCCY 1 cut(s) 48
Psp5II RGGWCCY 1 cut(s) 48
PspFI CCCAGC 3 cut(s) 582, 828, 866
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 4 cut(s) 34, 48, 1004, 1022
PspPPI RGGWCCY 1 cut(s) 48
PvuII CAGCTG 2 cut(s) 728, 832
RsaI GTAC 3 cut(s) 55, 94, 912
RsaNI GTAC 3 cut(s) 54, 93, 911
RseI CAYNNNNRTG 5 cut(s) 138, 182, 188, 771, 777
SapI GCTCTTC 1 cut(s) 122
SaqAI TTAA 2 cut(s) 171, 615
SatI GCNGC 3 cut(s) 687, 849, 939
Sau96I GGNCC 4 cut(s) 34, 48, 1004, 1022
SduI GDGCHC 4 cut(s) 17, 340, 381, 784
SfcI CTRYAG 1 cut(s) 733
SinI GGWCC 2 cut(s) 48, 1022
SmiMI CAYNNNNRTG 5 cut(s) 138, 182, 188, 771, 777
SmlI CTYRAG 2 cut(s) 401, 468
SmoI CTYRAG 2 cut(s) 401, 468
SpeI ACTAGT 1 cut(s) 872
Sse9I AATT 3 cut(s) 40, 58, 280
SseBI AGGCCT 1 cut(s) 952
SspI AATATT 5 cut(s) 622, 652, 839, 880, 1018
SspMI CTAG 4 cut(s) 438, 477, 873, 923
StuI AGGCCT 1 cut(s) 952
TaqI TCGA 4 cut(s) 546, 597, 661, 822
TasI AATT 3 cut(s) 40, 58, 280
TatI WGTACW 1 cut(s) 53
TfiI GAWTC 3 cut(s) 108, 432, 824
Tru1I TTAA 2 cut(s) 171, 615
Tru9I TTAA 2 cut(s) 171, 615
TscAI CASTG 1 cut(s) 82
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 3 cut(s) 686, 848, 938
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 6 cut(s) 122, 194, 206, 291, 701, 843
TspGWI ACGGA 2 cut(s) 351, 383
TspRI CASTG 1 cut(s) 82
VpaK11BI GGWCC 2 cut(s) 48, 1022
XagI CCTNNNNNAGG 1 cut(s) 753
XapI RAATTY 2 cut(s) 58, 280
XbaI TCTAGA 1 cut(s) 922
XmiI GTMKAC 1 cut(s) 763
XspI CTAG 4 cut(s) 438, 477, 873, 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.