AT5G57970

Methyladenine glycosylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015324
Physical Location & Seq
Forward (+)
23466685 .. 23469015
2331 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G57970.2

Sequence Viewer

Length: 1044 bp
ATGTCAGGTGCTCCTAGAGTTCAGTCCATGAATGTGGCTGAAGCAGAGACCAGGTCAACTCTGGGGTCTACTGCTAAAAAGGCTAGTCCTTTCATCACACACAAAGCTGTATCAAAGTCACTGCGAAAGCTTGAAAGATCCTCATCTGGGCGTACTGGATCAGATGAGAAAACATCTTATGCTACACCAACAGAAACTGTGTCTTCTTCTTCTCAGAAGCATACTCTTAATGCGGCTTCTATACTACGACGGCATGAGCAGAACCTGAATTCTAATCTGTCACTTAATGCATCGTTTTCATCTGATGCCTCCATGGACTCGTTCCACAGCCGAGCATCAACTGGTCGCTTGATTAGGTCGTACAGTGTTGGAAGTAGAAGTAAGTCTTACCCTTCCAAGCCAAGAAGTGTTGTCTCTGAAGGTGCTTTGGATTCACCACCTAATGGTTCAGAGACTAAGAAGAGGTGTACTTGGGTGACACCAAACTCCGATCCATGTTATATAGTTTTCCATGATGAAGAATGGGGTGTGCCAGTTCACGATGACAAGAGGTTGTTTGAACTCCTTGTGCTTTCGGGTGCTTTGGCCGAACACACATGGCCTACGATACTGAGCAAGAGACAGGCTTTCAGGGAAGTTTTTGCTGATTTTGACCCCAATGCCATTGTGAAAATCAATGAGAAGAAGATAATTGGTCCAGGAAGCCCGGCAAGCACTTTATTGTCTGATCTTAAGCTAAGGGCAGTCATTGAGAATGCACGCCAGATACTTAAGGTGATAGAAGAATACGGATCATTTGACAAGTATATATGGAGTTTTGTGAAGAATAAGGCGATTGTGAGCAAGTTCAGGTACCAGCGACAAGTACCTGCAAAAACTCCAAAAGCAGAAGTGATAAGTAAAGATCTAGTGAGAAGAGGGTTCCGCAGCGTCGGACCAACGGTGGTTTACTCCTTCATGCAGGCAGCAGGGATAACAAACGATCATCTTACCAGTTGTTTCAGGTTCCACCATTGTATATTCGAACATGAAAGGTATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
Adenine_glyco

Protein Analysis

347

Amino Acids

38.65

Weight (kDa)

9.71

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adenine_glyco PF03352 162 - 335 1.7e-67 Methyladenine glycosylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57970 AT5G57970
fragaria_vesca FvH4_1g00950 FvH4_1g00950
malus_domestica MD02G1007800.v1.1
prunus_persica Prupe.7G262700_v2.0.a1
pyrus_communis pycom02g00670 pycom15g13660
rosa_chinensis RchiOBHm_Chr2g0085681
rosa_laevigata RLG00000015711
rosa_multiflora Rmu_sc0007631.1_g000006
rosa_roxburghii Rroxscaffold_2G00155130
rosa_rugosa Rorug01G0462200
rosa_samantha Rh2BG011900 Rh2CG012700
rosa_wichuraiana Rw2G001010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 877
Acc65I GGTACC 1 cut(s) 852
AccB1I GGYRCC 1 cut(s) 852
AccB7I CCANNNNNTGG 1 cut(s) 443
AccI GTMKAC 1 cut(s) 68
AciI CCGC 2 cut(s) 233, 925
AclWI GGATC 4 cut(s) 132, 166, 485, 799
AcoI YGGCCR 1 cut(s) 585
AcsI RAATTY 1 cut(s) 268
AcuI CTGAAG 2 cut(s) 60, 438
AfaI GTAC 5 cut(s) 154, 362, 469, 854, 867
AfiI CCNNNNNNNGG 2 cut(s) 147, 443
AflII CTTAAG 2 cut(s) 731, 770
AgsI TTSAA 2 cut(s) 134, 560
AjnI CCWGG 2 cut(s) 50, 697
AluBI AGCT 3 cut(s) 107, 130, 736
AluI AGCT 3 cut(s) 107, 130, 736
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 4 cut(s) 41, 418, 446, 613
AlwI GGATC 4 cut(s) 132, 166, 485, 799
AlwNI CAGNNNCTG 2 cut(s) 197, 265
AoxI GGCC 2 cut(s) 585, 599
ApeKI GCWGC 2 cut(s) 927, 965
ApoI RAATTY 1 cut(s) 268
Asp718I GGTACC 1 cut(s) 852
AspS9I GGNCC 2 cut(s) 695, 935
AsuC2I CCSGG 1 cut(s) 707
AsuHPI GGTGA 3 cut(s) 426, 487, 787
AsuII TTCGAA 1 cut(s) 1023
AvaII GGWCC 2 cut(s) 695, 935
BanI GGYRCC 1 cut(s) 852
BbsI GAAGAC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 2 cut(s) 939, 977
BceAI ACGGC 1 cut(s) 266
BciT130I CCWGG 2 cut(s) 52, 699
BcnI CCSGG 1 cut(s) 707
BcoDI GTCTC 4 cut(s) 41, 418, 446, 613
BfaI CTAG 3 cut(s) 15, 84, 908
BfrI CTTAAG 2 cut(s) 731, 770
BfuAI ACCTGC 1 cut(s) 877
BglII AGATCT 1 cut(s) 904
BisI GCNGC 3 cut(s) 234, 928, 966
BlsI GCNGC 3 cut(s) 235, 929, 967
Bme1390I CCNGG 3 cut(s) 52, 699, 707
Bme18I GGWCC 2 cut(s) 695, 935
BmgT120I GGNCC 2 cut(s) 695, 935
BmiI GGNNCC 3 cut(s) 854, 923, 1007
BmrFI CCNGG 3 cut(s) 52, 699, 707
BmsI GCATC 3 cut(s) 295, 299, 344
BpiI GAAGAC 1 cut(s) 195
Bpu10I CCTNAGC 1 cut(s) 737
Bpu14I TTCGAA 1 cut(s) 1023
BpuMI CCSGG 1 cut(s) 707
BsaBI GATNNNNATC 1 cut(s) 142
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 312
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 443
Bse1I ACTGG 4 cut(s) 160, 346, 533, 993
Bse8I GATNNNNATC 1 cut(s) 142
BseBI CCWGG 2 cut(s) 52, 699
BseDI CCNNGG 1 cut(s) 312
BseJI GATNNNNATC 1 cut(s) 142
BseLI CCNNNNNNNGG 2 cut(s) 147, 443
BseMII CTCAG 2 cut(s) 227, 602
BseNI ACTGG 4 cut(s) 160, 346, 533, 993
BseXI GCAGC 2 cut(s) 939, 977
BshFI GGCC 2 cut(s) 587, 601
BshNI GGYRCC 1 cut(s) 852
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 1 cut(s) 707
BslI CCNNNNNNNGG 2 cut(s) 147, 443
BsmAI GTCTC 4 cut(s) 41, 418, 446, 613
BsmI GAATGC 1 cut(s) 760
BsnI GGCC 2 cut(s) 587, 601
Bso31I GGTCTC 1 cut(s) 41
Bsp119I TTCGAA 1 cut(s) 1023
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 7 cut(s) 137, 158, 490, 727, 791, 904, 982
Bsp19I CCATGG 1 cut(s) 312
BspACI CCGC 2 cut(s) 233, 925
BspANI GGCC 2 cut(s) 587, 601
BspCNI CTCAG 2 cut(s) 226, 603
BspLI GGNNCC 3 cut(s) 854, 923, 1007
BspMI ACCTGC 1 cut(s) 877
BspPI GGATC 4 cut(s) 132, 166, 485, 799
BspT104I TTCGAA 1 cut(s) 1023
BspT107I GGYRCC 1 cut(s) 852
BspTI CTTAAG 2 cut(s) 731, 770
BspTNI GGTCTC 1 cut(s) 41
BsrI ACTGG 4 cut(s) 160, 346, 533, 993
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 7 cut(s) 137, 158, 490, 727, 791, 904, 982
BssT1I CCWWGG 1 cut(s) 312
Bst2UI CCWGG 2 cut(s) 52, 699
Bst4CI ACNGT 3 cut(s) 199, 365, 943
Bst6I CTCTTC 2 cut(s) 455, 910
BstAFI CTTAAG 2 cut(s) 731, 770
BstBI TTCGAA 1 cut(s) 1023
BstC8I GCNNGC 3 cut(s) 712, 760, 963
BstDEI CTNAG 4 cut(s) 213, 456, 611, 737
BstDSI CCRYGG 1 cut(s) 312
BstKTI GATC 7 cut(s) 140, 161, 493, 730, 794, 907, 985
BstMAI GTCTC 4 cut(s) 41, 418, 446, 613
BstMBI GATC 7 cut(s) 137, 158, 490, 727, 791, 904, 982
BstMWI GCNNNNNNNGC 2 cut(s) 80, 711
BstNI CCWGG 2 cut(s) 52, 699
BstSCI CCNGG 3 cut(s) 50, 697, 705
BstV1I GCAGC 2 cut(s) 939, 977
BstV2I GAAGAC 1 cut(s) 195
BstX2I RGATCY 2 cut(s) 137, 904
BstXI CCANNNNNNTGG 1 cut(s) 34
BstYI RGATCY 2 cut(s) 137, 904
BsuRI GGCC 2 cut(s) 587, 601
BtgI CCRYGG 1 cut(s) 312
BtsI GCAGTG 1 cut(s) 119
BtsIMutI CAGTG 2 cut(s) 119, 370
BveI ACCTGC 1 cut(s) 877
Cac8I GCNNGC 3 cut(s) 712, 760, 963
CaiI CAGNNNCTG 2 cut(s) 197, 265
Cfr13I GGNCC 2 cut(s) 695, 935
CseI GACGC 1 cut(s) 919
CsiI ACCWGGT 1 cut(s) 50
Csp6I GTAC 5 cut(s) 153, 361, 468, 853, 866
CviAII CATG 8 cut(s) 28, 254, 313, 495, 512, 597, 958, 1028
CviQI GTAC 5 cut(s) 153, 361, 468, 853, 866
DdeI CTNAG 4 cut(s) 213, 456, 611, 737
DpnI GATC 7 cut(s) 139, 160, 492, 729, 793, 906, 984
DpnII GATC 7 cut(s) 137, 158, 490, 727, 791, 904, 982
EaeI YGGCCR 1 cut(s) 585
Eam1104I CTCTTC 2 cut(s) 455, 910
EarI CTCTTC 2 cut(s) 455, 910
Eco130I CCWWGG 1 cut(s) 312
Eco31I GGTCTC 1 cut(s) 41
Eco47I GGWCC 2 cut(s) 695, 935
Eco57I CTGAAG 2 cut(s) 60, 438
EcoRI GAATTC 1 cut(s) 268
EcoRII CCWGG 2 cut(s) 50, 697
EcoT14I CCWWGG 1 cut(s) 312
EcoT22I ATGCAT 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 8 cut(s) 31, 257, 316, 498, 515, 600, 961, 1031
FalI AAGNNNNNCTT 2 cut(s) 370, 402
FatI CATG 8 cut(s) 27, 253, 312, 494, 511, 596, 957, 1027
FblI GTMKAC 1 cut(s) 68
Fnu4HI GCNGC 3 cut(s) 234, 928, 966
Fsp4HI GCNGC 3 cut(s) 234, 928, 966
FspBI CTAG 3 cut(s) 15, 84, 908
GluI GCNGC 3 cut(s) 234, 928, 966
HaeIII GGCC 2 cut(s) 587, 601
HapII CCGG 1 cut(s) 707
HgaI GACGC 1 cut(s) 919
Hin1II CATG 8 cut(s) 31, 257, 316, 498, 515, 600, 961, 1031
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 2 cut(s) 317, 431
HpaII CCGG 1 cut(s) 707
HphI GGTGA 3 cut(s) 426, 487, 787
Hpy166II GTNNAC 5 cut(s) 57, 69, 468, 538, 949
Hpy188I TCNGA 9 cut(s) 163, 216, 304, 418, 451, 490, 727, 935, 1043
Hpy188III TCNNGA 1 cut(s) 539
Hpy8I GTNNAC 5 cut(s) 57, 69, 468, 538, 949
Hpy99I CGWCG 2 cut(s) 252, 935
HpyAV CCTTC 3 cut(s) 402, 413, 964
HpyCH4III ACNGT 3 cut(s) 199, 365, 943
HpyCH4V TGCA 4 cut(s) 290, 758, 872, 961
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 711
HpyF3I CTNAG 4 cut(s) 213, 456, 611, 737
Hsp92II CATG 8 cut(s) 31, 257, 316, 498, 515, 600, 961, 1031
KpnI GGTACC 1 cut(s) 856
Kzo9I GATC 7 cut(s) 137, 158, 490, 727, 791, 904, 982
LmnI GCTCC 1 cut(s) 16
Lsp1109I GCAGC 2 cut(s) 939, 977
LweI GCATC 3 cut(s) 295, 299, 344
MabI ACCWGGT 1 cut(s) 50
MaeI CTAG 3 cut(s) 15, 84, 908
MaeIII GTNAC 3 cut(s) 117, 279, 475
MalI GATC 7 cut(s) 139, 160, 492, 729, 793, 906, 984
MboI GATC 7 cut(s) 137, 158, 490, 727, 791, 904, 982
MflI RGATCY 2 cut(s) 137, 904
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 2 cut(s) 268, 690
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 2 cut(s) 349, 913
MnlI CCTC 5 cut(s) 151, 319, 456, 543, 911
Mph1103I ATGCAT 1 cut(s) 292
MseI TTAA 4 cut(s) 228, 285, 732, 771
MslI CAYNNNNRTG 1 cut(s) 32
MspCI CTTAAG 2 cut(s) 731, 770
MspI CCGG 1 cut(s) 707
MspR9I CCNGG 3 cut(s) 52, 699, 707
Mva1269I GAATGC 1 cut(s) 760
MvaI CCWGG 2 cut(s) 52, 699
MwoI GCNNNNNNNGC 2 cut(s) 80, 711
NciI CCSGG 1 cut(s) 707
NcoI CCATGG 1 cut(s) 312
NdeII GATC 7 cut(s) 137, 158, 490, 727, 791, 904, 982
NlaIII CATG 8 cut(s) 31, 257, 316, 498, 515, 600, 961, 1031
NlaIV GGNNCC 3 cut(s) 854, 923, 1007
NmeAIII GCCGAG 1 cut(s) 356
NmuCI GTSAC 3 cut(s) 117, 279, 475
NsiI ATGCAT 1 cut(s) 292
NspV TTCGAA 1 cut(s) 1023
PctI GAATGC 1 cut(s) 760
PfeI GAWTC 1 cut(s) 431
PflFI GACNNNGTC 1 cut(s) 52
PflMI CCANNNNNTGG 1 cut(s) 443
PfoI TCCNGGA 1 cut(s) 697
PkrI GCNGC 3 cut(s) 235, 929, 967
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
Psp6I CCWGG 2 cut(s) 50, 697
PspGI CCWGG 2 cut(s) 50, 697
PspN4I GGNNCC 3 cut(s) 854, 923, 1007
PspPI GGNCC 2 cut(s) 695, 935
PstNI CAGNNNCTG 2 cut(s) 197, 265
PsuI RGATCY 2 cut(s) 137, 904
PsyI GACNNNGTC 1 cut(s) 52
RsaI GTAC 5 cut(s) 154, 362, 469, 854, 867
RsaNI GTAC 5 cut(s) 153, 361, 468, 853, 866
RseI CAYNNNNRTG 1 cut(s) 32
SaqAI TTAA 4 cut(s) 228, 285, 732, 771
SatI GCNGC 3 cut(s) 234, 928, 966
Sau3AI GATC 7 cut(s) 137, 158, 490, 727, 791, 904, 982
Sau96I GGNCC 2 cut(s) 695, 935
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 3 cut(s) 52, 699, 707
SduI GDGCHC 1 cut(s) 13
SexAI ACCWGGT 1 cut(s) 50
SfaNI GCATC 3 cut(s) 295, 299, 344
SfuI TTCGAA 1 cut(s) 1023
SinI GGWCC 2 cut(s) 695, 935
SmiMI CAYNNNNRTG 1 cut(s) 32
SmlI CTYRAG 2 cut(s) 731, 770
SmoI CTYRAG 2 cut(s) 731, 770
Sse9I AATT 2 cut(s) 268, 690
SsiI CCGC 2 cut(s) 233, 925
SspMI CTAG 3 cut(s) 15, 84, 908
StyD4I CCNGG 3 cut(s) 50, 697, 705
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 3 cut(s) 199, 365, 943
TaqI TCGA 1 cut(s) 1023
TasI AATT 2 cut(s) 268, 690
TatI WGTACW 1 cut(s) 467
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 4 cut(s) 228, 285, 732, 771
Tru9I TTAA 4 cut(s) 228, 285, 732, 771
TscAI CASTG 2 cut(s) 126, 370
TseFI GTSAC 3 cut(s) 117, 279, 475
TseI GCWGC 2 cut(s) 927, 965
Tsp45I GTSAC 3 cut(s) 117, 279, 475
TspDTI ATGAA 6 cut(s) 44, 82, 288, 531, 946, 1044
TspGWI ACGGA 1 cut(s) 804
TspRI CASTG 2 cut(s) 126, 370
Tth111I GACNNNGTC 1 cut(s) 52
Van91I CCANNNNNTGG 1 cut(s) 443
Vha464I CTTAAG 2 cut(s) 731, 770
VpaK11BI GGWCC 2 cut(s) 695, 935
XapI RAATTY 1 cut(s) 268
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 68
XspI CTAG 3 cut(s) 15, 84, 908
Zsp2I ATGCAT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.