FvH4_1g00950

Methyladenine glycosylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0015324
Physical Location & Seq
Forward (+)
462607 .. 466925
4319 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g00950.t2

Sequence Viewer

Length: 1164 bp
ATGTCAGGAGCTCCAAGAGTAAAGTCTATCAATGTGGCTAATTCAGAGTCACGGTCGGTGCTTGGACCTGCTGGAAATAAGGGAGGGGCATTCAGTGCACGAAAACCGGCTACTAAGCCACTGAGAAAGACTGAGAAAATGGTTGAGGAGTTTACATCAGCTGAAGACAAGAAAACCCAGCAATCTTCAAAGCTTTCTACCTCTCCTCAGCTGCATTCTCTCAGTGTTCCCTCAGTACTTCGTCGGCATGAGCAGTTATTGCAGTCTAATTTTTCACTAAATGCTTCATGTTCATCTGACGCCTCTACAGATTCATTCCATAGTAGAGCATCGACTGGTAGACTTATTCGATCAAATAGTGTAGGGAGTAGGAGGAAGCAGTATGTTTCTAAACCAAGAAGTGTTGTTTCTGATGGTGGATTGGATTCTCCTCCTGGTGGTTCTCAGTCAAAGAAACGGTGTGCTTGGGTGACGCCAAATACTGATCCATGTTATGTTGCTTTTCATGATGAAGAATGGGGGCTTCCGGTACACGATGACAAGAAACTGTTCGAGCTTCTTGTCCTATCCGGTGCTTTGGCTGAACTTTCATGGCCTCTCATTCTAAGCAAAAGGCACATCTTTAGGGAAGTGTTTGCAGATTTTGATCCTGTTGATGTCTCAGAGTTTAATGAGAAGAAGATAATGGCACCGGGAAGTGTTGCAAGCTCCCTATTGTCTGAATCAAAGTTGCGTGCTATCCTCGAAAATGCACGTCAAATGACCAAGGTTATAGATGAGTTTGGATCCTTCGACAAGTATATTTGGAGCTTTGTGAATAACAAGCCTATAGTTAGCAGATTCCGGTACCCTCGGCAGGTTCCAGCCAAAACCCCAAAAGCAGATGTGATCAGCAAAGATCTTGTGAGAAGGGGATTCCGTAGTGTGGGTCCCACTGTCATCTACTCTTTCATGCAAGTCGCCGGAATTACAAATGACCATCTGGTTAGTTGCTTCAGATTCCAGGATTGTCTTAACGCTGCAGAAGGGAAGGAAGAGAATCGCACCAAGGAAGAGAGTGGAAAGAAAACCGAGAACGGGATAGAATCAGACTTGTCAGTTGCCCTAGATGAGTTGAGTTTCTCCTCTTATGAAGACTGTCCAGATAAAAAAAAAGACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
Adenine_glyco

Protein Analysis

388

Amino Acids

42.86

Weight (kDa)

9.13

Isoelectric Point (pI)

53.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adenine_glyco PF03352 161 - 334 1.6e-66 Methyladenine glycosylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57970 AT5G57970
fragaria_vesca FvH4_1g00950 FvH4_1g00950
malus_domestica MD02G1007800.v1.1
prunus_persica Prupe.7G262700_v2.0.a1
pyrus_communis pycom02g00670 pycom15g13660
rosa_chinensis RchiOBHm_Chr2g0085681
rosa_laevigata RLG00000015711
rosa_multiflora Rmu_sc0007631.1_g000006
rosa_roxburghii Rroxscaffold_2G00155130
rosa_rugosa Rorug01G0462200
rosa_samantha Rh2BG011900 Rh2CG012700
rosa_wichuraiana Rw2G001010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 76, 847
Acc65I GGTACC 1 cut(s) 846
AccB1I GGYRCC 2 cut(s) 688, 846
AccI GTMKAC 1 cut(s) 340
AclWI GGATC 4 cut(s) 479, 641, 780, 793
AcuI CTGAAG 2 cut(s) 183, 979
AcyI GRCGYC 2 cut(s) 300, 473
AfaI GTAC 3 cut(s) 237, 531, 848
AfiI CCNNNNNNNGG 4 cut(s) 437, 856, 925, 1077
AgsI TTSAA 1 cut(s) 189
AjiI CACGTC 1 cut(s) 755
AjnI CCWGG 2 cut(s) 433, 1002
AluBI AGCT 7 cut(s) 11, 161, 193, 211, 556, 708, 810
AluI AGCT 7 cut(s) 11, 161, 193, 211, 556, 708, 810
Alw21I GWGCWC 2 cut(s) 13, 100
Alw26I GTCTC 1 cut(s) 664
Alw44I GTGCAC 1 cut(s) 96
AlwI GGATC 4 cut(s) 479, 641, 780, 793
AoxI GGCC 1 cut(s) 593
ApaLI GTGCAC 1 cut(s) 96
ApeKI GCWGC 2 cut(s) 211, 1019
Asp700I GAANNNNTTC 1 cut(s) 548
Asp718I GGTACC 1 cut(s) 846
AspS9I GGNCC 2 cut(s) 65, 929
AsuC2I CCSGG 1 cut(s) 693
AsuHPI GGTGA 1 cut(s) 481
AvaII GGWCC 2 cut(s) 65, 929
BaeGI GKGCMC 1 cut(s) 100
BamHI GGATCC 1 cut(s) 785
BanI GGYRCC 2 cut(s) 688, 846
BanII GRGCYC 1 cut(s) 13
BbsI GAAGAC 2 cut(s) 171, 1140
Bbv12I GWGCWC 2 cut(s) 13, 100
BbvCI CCTCAGC 1 cut(s) 207
BbvI GCAGC 2 cut(s) 198, 1006
BccI CCATC 2 cut(s) 407, 987
BciT130I CCWGG 2 cut(s) 435, 1004
BclI TGATCA 1 cut(s) 888
BcnI CCSGG 1 cut(s) 693
BcoDI GTCTC 1 cut(s) 664
BfaI CTAG 1 cut(s) 1106
BfmI CTRYAG 3 cut(s) 306, 828, 1020
BfuAI ACCTGC 2 cut(s) 76, 847
BglII AGATCT 1 cut(s) 898
BisI GCNGC 2 cut(s) 212, 1020
BlsI GCNGC 2 cut(s) 213, 1021
BmcAI AGTACT 1 cut(s) 237
Bme1390I CCNGG 3 cut(s) 435, 693, 1004
Bme18I GGWCC 2 cut(s) 65, 929
BmgBI CACGTC 1 cut(s) 755
BmgT120I GGNCC 2 cut(s) 65, 929
BmiI GGNNCC 6 cut(s) 690, 787, 848, 861, 930, 931
BmrFI CCNGG 3 cut(s) 435, 693, 1004
BmsI GCATC 1 cut(s) 338
BpiI GAAGAC 2 cut(s) 171, 1140
Bpu10I CCTNAGC 1 cut(s) 207
BpuMI CCSGG 1 cut(s) 693
BsaBI GATNNNNATC 1 cut(s) 645
BsaHI GRCGYC 2 cut(s) 300, 473
BsaJI CCNNGG 3 cut(s) 765, 851, 1047
BsaWI WCCGGW 3 cut(s) 526, 569, 843
Bsc4I CCNNNNNNNGG 4 cut(s) 437, 856, 925, 1077
Bse118I RCCGGY 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 340
Bse8I GATNNNNATC 1 cut(s) 645
BseBI CCWGG 2 cut(s) 435, 1004
BseDI CCNNGG 3 cut(s) 765, 851, 1047
BseJI GATNNNNATC 1 cut(s) 645
BseLI CCNNNNNNNGG 4 cut(s) 437, 856, 925, 1077
BseMII CTCAG 7 cut(s) 113, 123, 221, 235, 246, 458, 675
BseNI ACTGG 1 cut(s) 340
BseRI GAGGAG 4 cut(s) 161, 195, 420, 1114
BseSI GKGCMC 1 cut(s) 100
BseXI GCAGC 2 cut(s) 198, 1006
BseYI CCCAGC 1 cut(s) 177
Bsh1285I CGRYCG 1 cut(s) 56
BshFI GGCC 1 cut(s) 595
BshNI GGYRCC 2 cut(s) 688, 846
BsiEI CGRYCG 1 cut(s) 56
BsiHKAI GWGCWC 2 cut(s) 13, 100
BsiSI CCGG 6 cut(s) 107, 527, 570, 692, 844, 963
BslFI GGGAC 1 cut(s) 915
BslI CCNNNNNNNGG 4 cut(s) 437, 856, 925, 1077
BsmAI GTCTC 1 cut(s) 664
BsmFI GGGAC 1 cut(s) 915
BsmI GAATGC 2 cut(s) 89, 214
BsnI GGCC 1 cut(s) 595
Bsp1286I GDGCHC 2 cut(s) 13, 100
Bsp143I GATC 6 cut(s) 350, 484, 646, 785, 888, 898
BspANI GGCC 1 cut(s) 595
BspCNI CTCAG 7 cut(s) 114, 124, 220, 234, 245, 457, 674
BspHI TCATGA 1 cut(s) 505
BspLI GGNNCC 6 cut(s) 690, 787, 848, 861, 930, 931
BspMAI CTGCAG 1 cut(s) 1024
BspMI ACCTGC 2 cut(s) 76, 847
BspPI GGATC 4 cut(s) 479, 641, 780, 793
BspT107I GGYRCC 2 cut(s) 688, 846
BsrFI RCCGGY 1 cut(s) 106
BsrI ACTGG 1 cut(s) 340
BssAI RCCGGY 1 cut(s) 106
BssECI CCNNGG 3 cut(s) 765, 851, 1047
BssMI GATC 6 cut(s) 350, 484, 646, 785, 888, 898
BssNI GRCGYC 2 cut(s) 300, 473
BssT1I CCWWGG 2 cut(s) 765, 1047
Bst2UI CCWGG 2 cut(s) 435, 1004
Bst4CI ACNGT 5 cut(s) 54, 459, 549, 937, 1139
Bst6I CTCTTC 2 cut(s) 1029, 1047
BstACI GRCGYC 2 cut(s) 300, 473
BstAPI GCANNNNNTGC 2 cut(s) 95, 259
BstC8I GCNNGC 2 cut(s) 706, 735
BstDEI CTNAG 9 cut(s) 114, 122, 132, 207, 221, 232, 444, 605, 661
BstKTI GATC 6 cut(s) 353, 487, 649, 788, 891, 901
BstMAI GTCTC 1 cut(s) 664
BstMBI GATC 6 cut(s) 350, 484, 646, 785, 888, 898
BstMCI CGRYCG 1 cut(s) 56
BstMWI GCNNNNNNNGC 2 cut(s) 95, 259
BstNI CCWGG 2 cut(s) 435, 1004
BstSCI CCNGG 3 cut(s) 433, 691, 1002
BstSFI CTRYAG 3 cut(s) 306, 828, 1020
BstSLI GKGCMC 1 cut(s) 100
BstV1I GCAGC 2 cut(s) 198, 1006
BstV2I GAAGAC 2 cut(s) 171, 1140
BstX2I RGATCY 2 cut(s) 785, 898
BstYI RGATCY 2 cut(s) 785, 898
BsuRI GGCC 1 cut(s) 595
BtrI CACGTC 1 cut(s) 755
BtsIMutI CAGTG 4 cut(s) 100, 119, 229, 933
BveI ACCTGC 2 cut(s) 76, 847
Cac8I GCNNGC 2 cut(s) 706, 735
CciI TCATGA 1 cut(s) 505
Cfr10I RCCGGY 1 cut(s) 106
Cfr13I GGNCC 2 cut(s) 65, 929
CseI GACGC 2 cut(s) 308, 481
Csp6I GTAC 3 cut(s) 236, 530, 847
CviAII CATG 6 cut(s) 248, 288, 489, 506, 591, 952
CviQI GTAC 3 cut(s) 236, 530, 847
DdeI CTNAG 9 cut(s) 114, 122, 132, 207, 221, 232, 444, 605, 661
DpnI GATC 6 cut(s) 352, 486, 648, 787, 890, 900
DpnII GATC 6 cut(s) 350, 484, 646, 785, 888, 898
Eam1104I CTCTTC 2 cut(s) 1029, 1047
EarI CTCTTC 2 cut(s) 1029, 1047
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 2 cut(s) 765, 1047
Eco24I GRGCYC 1 cut(s) 13
Eco47I GGWCC 2 cut(s) 65, 929
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 2 cut(s) 183, 979
EcoICRI GAGCTC 1 cut(s) 11
EcoO109I RGGNCCY 1 cut(s) 929
EcoRII CCWGG 2 cut(s) 433, 1002
EcoT14I CCWWGG 2 cut(s) 765, 1047
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 2 cut(s) 765, 1047
FaeI CATG 6 cut(s) 251, 291, 492, 509, 594, 955
FaqI GGGAC 1 cut(s) 915
FatI CATG 6 cut(s) 247, 287, 488, 505, 590, 951
FbaI TGATCA 1 cut(s) 888
FblI GTMKAC 1 cut(s) 340
Fnu4HI GCNGC 2 cut(s) 212, 1020
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 2 cut(s) 212, 1020
FspBI CTAG 1 cut(s) 1106
GluI GCNGC 2 cut(s) 212, 1020
GsaI CCCAGC 1 cut(s) 181
HaeIII GGCC 1 cut(s) 595
HapII CCGG 6 cut(s) 107, 527, 570, 692, 844, 963
HgaI GACGC 2 cut(s) 308, 481
Hin1I GRCGYC 2 cut(s) 300, 473
Hin1II CATG 6 cut(s) 251, 291, 492, 509, 594, 955
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 9 cut(s) 47, 311, 425, 722, 840, 915, 999, 1039, 1085
HpaII CCGG 6 cut(s) 107, 527, 570, 692, 844, 963
HphI GGTGA 1 cut(s) 481
Hpy166II GTNNAC 4 cut(s) 98, 153, 341, 532
Hpy188I TCNGA 7 cut(s) 46, 298, 412, 664, 721, 998, 1090
Hpy188III TCNNGA 3 cut(s) 6, 506, 1142
Hpy8I GTNNAC 4 cut(s) 98, 153, 341, 532
Hpy99I CGWCG 1 cut(s) 246
HpyAV CCTTC 4 cut(s) 799, 903, 1019, 1024
HpyCH4III ACNGT 5 cut(s) 54, 459, 549, 937, 1139
HpyCH4IV ACGT 1 cut(s) 754
HpyCH4V TGCA 8 cut(s) 98, 214, 262, 638, 704, 752, 955, 1022
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 259
HpyF3I CTNAG 9 cut(s) 114, 122, 132, 207, 221, 232, 444, 605, 661
HpySE526I ACGT 1 cut(s) 754
Hsp92I GRCGYC 2 cut(s) 300, 473
Hsp92II CATG 6 cut(s) 251, 291, 492, 509, 594, 955
KflI GGGWCCC 1 cut(s) 929
KpnI GGTACC 1 cut(s) 850
Ksp22I TGATCA 1 cut(s) 888
Kzo9I GATC 6 cut(s) 350, 484, 646, 785, 888, 898
LmnI GCTCC 4 cut(s) 8, 16, 713, 807
Lsp1109I GCAGC 2 cut(s) 198, 1006
LweI GCATC 1 cut(s) 338
MaeI CTAG 1 cut(s) 1106
MaeII ACGT 1 cut(s) 754
MaeIII GTNAC 2 cut(s) 48, 469
MalI GATC 6 cut(s) 352, 486, 648, 787, 890, 900
MboI GATC 6 cut(s) 350, 484, 646, 785, 888, 898
MboII GAAGA 8 cut(s) 176, 177, 524, 688, 691, 1046, 1064, 1145
MflI RGATCY 2 cut(s) 785, 898
MhlI GDGCHC 2 cut(s) 13, 100
MluCI AATT 3 cut(s) 40, 268, 966
MlyI GAGTC 1 cut(s) 56
MroXI GAANNNNTTC 1 cut(s) 548
MseI TTAA 2 cut(s) 669, 1014
MspA1I CMGCKG 2 cut(s) 161, 211
MspI CCGG 6 cut(s) 107, 527, 570, 692, 844, 963
MspR9I CCNGG 3 cut(s) 435, 693, 1004
Mva1269I GAATGC 2 cut(s) 89, 214
MvaI CCWGG 2 cut(s) 435, 1004
MwoI GCNNNNNNNGC 2 cut(s) 95, 259
NciI CCSGG 1 cut(s) 693
NdeII GATC 6 cut(s) 350, 484, 646, 785, 888, 898
NlaIII CATG 6 cut(s) 251, 291, 492, 509, 594, 955
NlaIV GGNNCC 6 cut(s) 690, 787, 848, 861, 930, 931
NmeAIII GCCGAG 1 cut(s) 832
NmuCI GTSAC 2 cut(s) 48, 469
PagI TCATGA 1 cut(s) 505
PctI GAATGC 2 cut(s) 89, 214
PdmI GAANNNNTTC 1 cut(s) 548
PfeI GAWTC 8 cut(s) 311, 425, 722, 840, 915, 999, 1039, 1085
PfoI TCCNGGA 1 cut(s) 1002
PkrI GCNGC 2 cut(s) 213, 1021
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
PpuMI RGGWCCY 1 cut(s) 929
Psp124BI GAGCTC 1 cut(s) 13
Psp5II RGGWCCY 1 cut(s) 929
Psp6I CCWGG 2 cut(s) 433, 1002
PspFI CCCAGC 1 cut(s) 177
PspGI CCWGG 2 cut(s) 433, 1002
PspN4I GGNNCC 6 cut(s) 690, 787, 848, 861, 930, 931
PspPI GGNCC 2 cut(s) 65, 929
PspPPI RGGWCCY 1 cut(s) 929
PstI CTGCAG 1 cut(s) 1024
PsuI RGATCY 2 cut(s) 785, 898
PvuII CAGCTG 2 cut(s) 161, 211
RsaI GTAC 3 cut(s) 237, 531, 848
RsaNI GTAC 3 cut(s) 236, 530, 847
SacI GAGCTC 1 cut(s) 13
SaqAI TTAA 2 cut(s) 669, 1014
SatI GCNGC 2 cut(s) 212, 1020
Sau3AI GATC 6 cut(s) 350, 484, 646, 785, 888, 898
Sau96I GGNCC 2 cut(s) 65, 929
ScaI AGTACT 1 cut(s) 237
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 3 cut(s) 435, 693, 1004
SduI GDGCHC 2 cut(s) 13, 100
SfaNI GCATC 1 cut(s) 338
SfcI CTRYAG 3 cut(s) 306, 828, 1020
SinI GGWCC 2 cut(s) 65, 929
Sse9I AATT 3 cut(s) 40, 268, 966
SspMI CTAG 1 cut(s) 1106
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 3 cut(s) 433, 691, 1002
StyI CCWWGG 2 cut(s) 765, 1047
TaaI ACNGT 5 cut(s) 54, 459, 549, 937, 1139
TaiI ACGT 1 cut(s) 757
TaqI TCGA 5 cut(s) 332, 349, 552, 744, 792
TasI AATT 3 cut(s) 40, 268, 966
TatI WGTACW 1 cut(s) 235
TfiI GAWTC 8 cut(s) 311, 425, 722, 840, 915, 999, 1039, 1085
Tru1I TTAA 2 cut(s) 669, 1014
Tru9I TTAA 2 cut(s) 669, 1014
TscAI CASTG 4 cut(s) 100, 126, 229, 940
TseFI GTSAC 2 cut(s) 48, 469
TseI GCWGC 2 cut(s) 211, 1019
Tsp45I GTSAC 2 cut(s) 48, 469
TspDTI ATGAA 8 cut(s) 276, 282, 303, 494, 525, 579, 940, 1146
TspGWI ACGGA 1 cut(s) 908
TspRI CASTG 4 cut(s) 100, 126, 229, 940
VneI GTGCAC 1 cut(s) 96
VpaK11BI GGWCC 2 cut(s) 65, 929
XmiI GTMKAC 1 cut(s) 340
XmnI GAANNNNTTC 1 cut(s) 548
XspI CTAG 1 cut(s) 1106
ZrmI AGTACT 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.