Rorug01G0462200

Methyladenine glycosylase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
55532491 .. 55532898
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0462200.1

Sequence Viewer

Length: 408 bp
ATGTGGAACCCATCAACTGGATTCTTCCGCAACATACCTTGTCCAAATTTTCAGATTGGGATGATAAACTGGACAGATGAAGAGGATGAGATCGGTGTATATTATGGTTTTGGTCAAGTGTCGGCCTCTGACGACTACAAACTTGTGGTCATACCAAATTTGGGTGTTTTTATGGAAGTACAAGTGTTCTCAGTCAAAGCTAACTGTTGGAAAGTTGTTAAAGCTCCTTACTTGACGCCATACCACCCCTGGTCTGAAGAATTGGGGACTTATTCAAATGGAGCGATTCATTGGGTCAGTAACCGTGAACCTGGGATTTTCGAGCCACCTGTCTATGCTTTTGATCTGGCAAATGAGGAGTTTCGGGAAATGCCATTGCCTGTTCTTAGCCGTAATGAACTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

135

Amino Acids

15.53

Weight (kDa)

4.61

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 1 - 127 1.7e-06 F-box associated beta propeller domain
FBA_1 PF07734 2 - 131 1e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57970 AT5G57970
fragaria_vesca FvH4_1g00950 FvH4_1g00950
malus_domestica MD02G1007800.v1.1
prunus_persica Prupe.7G262700_v2.0.a1
pyrus_communis pycom02g00670 pycom15g13660
rosa_chinensis RchiOBHm_Chr2g0085681
rosa_laevigata RLG00000015711
rosa_multiflora Rmu_sc0007631.1_g000006
rosa_roxburghii Rroxscaffold_2G00155130
rosa_rugosa Rorug01G0462200
rosa_samantha Rh2BG011900 Rh2CG012700
rosa_wichuraiana Rw2G001010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 17
AciI CCGC 1 cut(s) 28
AcsI RAATTY 2 cut(s) 46, 157
AcuI CTGAAG 1 cut(s) 276
AcyI GRCGYC 1 cut(s) 236
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 2 cut(s) 17, 161
AgsI TTSAA 1 cut(s) 276
AjnI CCWGG 2 cut(s) 248, 310
AluBI AGCT 2 cut(s) 200, 224
AluI AGCT 2 cut(s) 200, 224
AoxI GGCC 1 cut(s) 123
ApoI RAATTY 2 cut(s) 46, 157
ArsI GACNNNNNNTTYG 2 cut(s) 132, 164
BccI CCATC 1 cut(s) 19
BceAI ACGGC 1 cut(s) 375
BciT130I CCWGG 2 cut(s) 250, 312
Bme1390I CCNGG 2 cut(s) 250, 312
BmiI GGNNCC 1 cut(s) 8
BmrFI CCNGG 2 cut(s) 250, 312
BsaHI GRCGYC 1 cut(s) 236
BsaJI CCNNGG 2 cut(s) 248, 311
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 161
Bse1I ACTGG 2 cut(s) 22, 74
Bse3DI GCAATG 1 cut(s) 374
BseBI CCWGG 2 cut(s) 250, 312
BseDI CCNNGG 2 cut(s) 248, 311
BseGI GGATG 2 cut(s) 66, 91
BseLI CCNNNNNNNGG 2 cut(s) 17, 161
BseMI GCAATG 1 cut(s) 374
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 2 cut(s) 22, 74
BseRI GAGGAG 1 cut(s) 371
BshFI GGCC 1 cut(s) 125
BslFI GGGAC 1 cut(s) 280
BslI CCNNNNNNNGG 2 cut(s) 17, 161
BsmFI GGGAC 1 cut(s) 280
BsnI GGCC 1 cut(s) 125
Bsp143I GATC 2 cut(s) 90, 343
BspACI CCGC 1 cut(s) 28
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 1 cut(s) 203
BspLI GGNNCC 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 374
BsrI ACTGG 2 cut(s) 22, 74
BssECI CCNNGG 2 cut(s) 248, 311
BssMI GATC 2 cut(s) 90, 343
BssNI GRCGYC 1 cut(s) 236
Bst2UI CCWGG 2 cut(s) 250, 312
Bst4CI ACNGT 2 cut(s) 206, 305
Bst6I CTCTTC 1 cut(s) 75
BstACI GRCGYC 1 cut(s) 236
BstDEI CTNAG 2 cut(s) 190, 386
BstF5I GGATG 2 cut(s) 66, 91
BstKTI GATC 2 cut(s) 93, 346
BstMBI GATC 2 cut(s) 90, 343
BstNI CCWGG 2 cut(s) 250, 312
BstSCI CCNGG 2 cut(s) 248, 310
BsuRI GGCC 1 cut(s) 125
BtsCI GGATG 2 cut(s) 66, 91
CseI GACGC 1 cut(s) 244
Csp6I GTAC 1 cut(s) 179
CviJI RGCY 5 cut(s) 125, 200, 224, 325, 390
CviKI_1 RGCY 5 cut(s) 125, 200, 224, 325, 390
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 2 cut(s) 190, 386
DpnI GATC 2 cut(s) 92, 345
DpnII GATC 2 cut(s) 90, 343
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 276
EcoRII CCWGG 2 cut(s) 248, 310
FaiI YATR 7 cut(s) 35, 100, 105, 152, 173, 241, 336
FaqI GGGAC 1 cut(s) 280
FokI GGATG 2 cut(s) 73, 98
HaeIII GGCC 1 cut(s) 125
HgaI GACGC 1 cut(s) 244
Hin1I GRCGYC 1 cut(s) 236
HinfI GANTC 2 cut(s) 21, 286
Hpy166II GTNNAC 1 cut(s) 308
Hpy188I TCNGA 3 cut(s) 54, 130, 256
Hpy188III TCNNGA 1 cut(s) 365
Hpy8I GTNNAC 1 cut(s) 308
HpyCH4III ACNGT 2 cut(s) 206, 305
HpyF3I CTNAG 2 cut(s) 190, 386
Hsp92I GRCGYC 1 cut(s) 236
Kzo9I GATC 2 cut(s) 90, 343
LmnI GCTCC 2 cut(s) 229, 281
LpnPI CCDG 9 cut(s) 3, 55, 235, 262, 297, 324, 332, 342, 393
MaeIII GTNAC 1 cut(s) 299
MalI GATC 2 cut(s) 92, 345
MboI GATC 2 cut(s) 90, 343
MboII GAAGA 3 cut(s) 16, 92, 269
MluCI AATT 3 cut(s) 46, 157, 260
MmeI TCCRAC 1 cut(s) 188
MnlI CCTC 3 cut(s) 76, 136, 349
MseI TTAA 1 cut(s) 219
MspR9I CCNGG 2 cut(s) 250, 312
MvaI CCWGG 2 cut(s) 250, 312
NdeII GATC 2 cut(s) 90, 343
NlaIV GGNNCC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 21, 286
PflMI CCANNNNNTGG 1 cut(s) 17
Psp6I CCWGG 2 cut(s) 248, 310
PspGI CCWGG 2 cut(s) 248, 310
PspN4I GGNNCC 1 cut(s) 8
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
SaqAI TTAA 1 cut(s) 219
Sau3AI GATC 2 cut(s) 90, 343
ScrFI CCNGG 2 cut(s) 250, 312
SetI ASST 5 cut(s) 40, 202, 226, 313, 331
Sse9I AATT 3 cut(s) 46, 157, 260
SsiI CCGC 1 cut(s) 28
StyD4I CCNGG 2 cut(s) 248, 310
TaaI ACNGT 2 cut(s) 206, 305
TaqI TCGA 1 cut(s) 321
TasI AATT 3 cut(s) 46, 157, 260
TatI WGTACW 1 cut(s) 178
TfiI GAWTC 2 cut(s) 21, 286
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TspDTI ATGAA 2 cut(s) 93, 278
Van91I CCANNNNNTGG 1 cut(s) 17
XapI RAATTY 2 cut(s) 46, 157
XcmI CCANNNNNNNNNTGG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.