pycom15g13660

Methyladenine glycosylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015324
Physical Location & Seq
Forward (+)
9265642 .. 9268805
3164 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g13660.3

Sequence Viewer

Length: 1137 bp
ATGTCAGGAGCTCCAAGAGTAAGGTCTATCAATGTGGCCGATTCAGAGTCAAGGCCAGTGCTTGGACCTGCTGGGAACAAGGCAGGGACGTTCAGTGCGCGAAAACCGGCTTCAAAACCACTGAGAAAGGCTGAGAAATTCAGCGAGGAGGTTTCATCAGCTGAAGAGAAGAAAACCCATCAATCTCCAATGCTGACTACCTCTCCTCAACCGCATTCACCCAAGGTTCATTCAGTGCTTCGTCGGCATGAGCAGCTATTGCACTCTAATTTTTCGCTGAATGCTTCTTGTTCATCAGATGCCTCTACGGATTCGTTTCAAAGTAGAGCATCTACGGGTAGGCTGATTCGGTCAAATAGTGTAGGGAGTAGGAGGAAGCAGTATGTTTCAAAGCCAAGAAGTGTGGTTTCTGATGGTGGATTGGACTCTCCTCCTGATGGTTCACAGTCTAAGAAGAGATGTGCTTGGGTGACGCCAAATGCTGATCCATGTTATGCTGCTTTTCATGATGAAGAATGGGGGCTTCCAGTACACGATGACAAGAAACTGTTTGAGCTTCTGGTCCTATCAGGTGCTTTGGCCGAGCTTTCATGGCCTGCCATTTTAAGCAAAAAGCACATCTTTAGGGAAGTTTTTGCAGATTTTGATCCCATTGCCGTCTCAAAATTGAATGAGAAGAAGCTTATATCACCAGGAAGTGCTGCAAGTTCCCTATTGTCTGAACTGAAATTGCGTGCTATCATTGAGAATGCACGTCAAACAACCAAGGTCATAGAGGAGTTTGGGTCATTTGACAAGTACATCTGGAGCTTTGTGAATAACAAGCCCATCGAGAGCCGATTCAGGTATCCTCGGCAGGTTCCGGTTAAAACTCCAAAAGCAGACGTCATAAGCAAAGACCTTGTGAGAAGAGGGTTCCGGAGTGTCGGGCCCACTGTCATTTACTCCTTCATGCAGGTCGCCGGAATCACAAATGACCATCTCGTTAGTTGCTTCAGATTCCAGGAATGTGTAAACGCTGCGGAAGGGAACGGAGAGAACGGCATCAAGGACGAGGCTGGAAAGAAAACGGAGAACGGGATAGAATCAGAGTTATCCGTCGCCATAGACAAGCTGAGTTTCTCGTCGGACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
Adenine_glyco

Protein Analysis

379

Amino Acids

41.55

Weight (kDa)

9.29

Isoelectric Point (pI)

54.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57970 AT5G57970
fragaria_vesca FvH4_1g00950 FvH4_1g00950
malus_domestica MD02G1007800.v1.1
prunus_persica Prupe.7G262700_v2.0.a1
pyrus_communis pycom02g00670 pycom15g13660
rosa_chinensis RchiOBHm_Chr2g0085681
rosa_laevigata RLG00000015711
rosa_multiflora Rmu_sc0007631.1_g000006
rosa_roxburghii Rroxscaffold_2G00155130
rosa_rugosa Rorug01G0462200
rosa_samantha Rh2BG011900 Rh2CG012700
rosa_wichuraiana Rw2G001010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 888
Acc36I ACCTGC 3 cut(s) 76, 847, 946
AccB7I CCANNNNNTGG 1 cut(s) 62
AccII CGCG 1 cut(s) 100
AccIII TCCGGA 1 cut(s) 918
AciI CCGC 2 cut(s) 212, 1022
AclWI GGATC 2 cut(s) 479, 641
AcoI YGGCCR 2 cut(s) 36, 579
AcsI RAATTY 1 cut(s) 137
AcuI CTGAAG 2 cut(s) 183, 979
AcyI GRCGYC 2 cut(s) 473, 885
AfaI GTAC 2 cut(s) 531, 800
AfiI CCNNNNNNNGG 2 cut(s) 62, 437
AgsI TTSAA 4 cut(s) 114, 320, 390, 670
AjiI CACGTC 1 cut(s) 755
AjnI CCWGG 2 cut(s) 691, 1002
AluBI AGCT 8 cut(s) 11, 161, 256, 556, 586, 682, 810, 1114
AluI AGCT 8 cut(s) 11, 161, 256, 556, 586, 682, 810, 1114
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 664
AlwI GGATC 2 cut(s) 479, 641
Aor13HI TCCGGA 1 cut(s) 918
AoxI GGCC 5 cut(s) 36, 53, 579, 593, 929
ApaI GGGCCC 1 cut(s) 933
ApeKI GCWGC 4 cut(s) 253, 497, 701, 1019
ApoI RAATTY 1 cut(s) 137
AspLEI GCGC 1 cut(s) 100
AspS9I GGNCC 4 cut(s) 65, 562, 929, 930
AsuHPI GGTGA 3 cut(s) 210, 481, 681
AvaII GGWCC 2 cut(s) 65, 562
BaeGI GKGCMC 1 cut(s) 933
BanII GRGCYC 2 cut(s) 13, 933
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 4 cut(s) 265, 484, 688, 1006
BccI CCATC 5 cut(s) 186, 407, 431, 836, 987
BceAI ACGGC 2 cut(s) 641, 1057
BciT130I CCWGG 2 cut(s) 693, 1004
BciVI GTATCC 1 cut(s) 858
BcoDI GTCTC 1 cut(s) 664
BfuAI ACCTGC 3 cut(s) 76, 847, 946
BfuI GTATCC 1 cut(s) 858
BisI GCNGC 4 cut(s) 254, 498, 702, 1020
BlsI GCNGC 4 cut(s) 255, 499, 703, 1021
Bme1390I CCNGG 2 cut(s) 693, 1004
Bme18I GGWCC 2 cut(s) 65, 562
BmgBI CACGTC 1 cut(s) 755
BmgT120I GGNCC 4 cut(s) 65, 562, 929, 930
BmiI GGNNCC 3 cut(s) 861, 917, 931
BmrFI CCNGG 2 cut(s) 693, 1004
BmsI GCATC 3 cut(s) 289, 338, 1053
BpmI CTGGAG 1 cut(s) 826
BsaBI GATNNNNATC 1 cut(s) 645
BsaHI GRCGYC 2 cut(s) 473, 885
BsaJI CCNNGG 3 cut(s) 222, 765, 851
BsaWI WCCGGW 2 cut(s) 862, 918
BsaXI ACNNNNNCTCC 4 cut(s) 187, 217, 770, 800
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 437
Bse118I RCCGGY 1 cut(s) 106
Bse1I ACTGG 2 cut(s) 56, 527
Bse3DI GCAATG 1 cut(s) 651
Bse8I GATNNNNATC 1 cut(s) 645
BseAI TCCGGA 1 cut(s) 918
BseBI CCWGG 2 cut(s) 693, 1004
BseDI CCNNGG 3 cut(s) 222, 765, 851
BseJI GATNNNNATC 1 cut(s) 645
BseLI CCNNNNNNNGG 2 cut(s) 62, 437
BseMI GCAATG 1 cut(s) 651
BseMII CTCAG 3 cut(s) 113, 123, 1106
BseNI ACTGG 2 cut(s) 56, 527
BseRI GAGGAG 4 cut(s) 161, 195, 420, 791
BseSI GKGCMC 1 cut(s) 933
BseXI GCAGC 4 cut(s) 265, 484, 688, 1006
BseYI CCCAGC 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 100
BshFI GGCC 5 cut(s) 38, 55, 581, 595, 931
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 4 cut(s) 107, 863, 919, 963
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 2 cut(s) 62, 437
BsmAI GTCTC 1 cut(s) 664
BsmBI CGTCTC 1 cut(s) 664
BsmFI GGGAC 1 cut(s) 100
BsmI GAATGC 3 cut(s) 214, 286, 754
BsnI GGCC 5 cut(s) 38, 55, 581, 595, 931
Bsp120I GGGCCC 1 cut(s) 929
Bsp1286I GDGCHC 2 cut(s) 13, 933
Bsp13I TCCGGA 1 cut(s) 918
Bsp143I GATC 2 cut(s) 484, 646
BspACI CCGC 2 cut(s) 212, 1022
BspANI GGCC 5 cut(s) 38, 55, 581, 595, 931
BspCNI CTCAG 3 cut(s) 114, 124, 1107
BspEI TCCGGA 1 cut(s) 918
BspFNI CGCG 1 cut(s) 100
BspHI TCATGA 1 cut(s) 505
BspLI GGNNCC 3 cut(s) 861, 917, 931
BspMI ACCTGC 3 cut(s) 76, 847, 946
BspPI GGATC 2 cut(s) 479, 641
BsrDI GCAATG 1 cut(s) 651
BsrFI RCCGGY 1 cut(s) 106
BsrI ACTGG 2 cut(s) 56, 527
BssAI RCCGGY 1 cut(s) 106
BssECI CCNNGG 3 cut(s) 222, 765, 851
BssMI GATC 2 cut(s) 484, 646
BssNI GRCGYC 2 cut(s) 473, 885
BssT1I CCWWGG 2 cut(s) 222, 765
Bst2UI CCWGG 2 cut(s) 693, 1004
Bst4CI ACNGT 3 cut(s) 447, 549, 937
Bst6I CTCTTC 3 cut(s) 159, 449, 904
BstACI GRCGYC 2 cut(s) 473, 885
BstAPI GCANNNNNTGC 1 cut(s) 259
BstC8I GCNNGC 2 cut(s) 597, 735
BstDEI CTNAG 4 cut(s) 122, 132, 450, 1115
BstFNI CGCG 1 cut(s) 100
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 2 cut(s) 487, 649
BstMAI GTCTC 1 cut(s) 664
BstMBI GATC 2 cut(s) 484, 646
BstMWI GCNNNNNNNGC 4 cut(s) 244, 253, 259, 592
BstNI CCWGG 2 cut(s) 693, 1004
BstSCI CCNGG 2 cut(s) 691, 1002
BstSLI GKGCMC 1 cut(s) 933
BstUI CGCG 1 cut(s) 100
BstV1I GCAGC 4 cut(s) 265, 484, 688, 1006
BsuI GTATCC 1 cut(s) 858
BsuRI GGCC 5 cut(s) 38, 55, 581, 595, 931
BtrI CACGTC 1 cut(s) 755
BtsIMutI CAGTG 5 cut(s) 63, 100, 119, 240, 933
BveI ACCTGC 3 cut(s) 76, 847, 946
Cac8I GCNNGC 2 cut(s) 597, 735
CciI TCATGA 1 cut(s) 505
CfoI GCGC 1 cut(s) 100
Cfr10I RCCGGY 1 cut(s) 106
Cfr13I GGNCC 4 cut(s) 65, 562, 929, 930
CseI GACGC 1 cut(s) 481
Csp6I GTAC 2 cut(s) 530, 799
CspCI CAANNNNNGTGG 2 cut(s) 384, 419
CviAII CATG 5 cut(s) 248, 489, 506, 591, 952
CviQI GTAC 2 cut(s) 530, 799
DdeI CTNAG 4 cut(s) 122, 132, 450, 1115
DpnI GATC 2 cut(s) 486, 648
DpnII GATC 2 cut(s) 484, 646
EaeI YGGCCR 2 cut(s) 36, 579
Eam1104I CTCTTC 3 cut(s) 159, 449, 904
EarI CTCTTC 3 cut(s) 159, 449, 904
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 2 cut(s) 222, 765
Eco24I GRGCYC 2 cut(s) 13, 933
Eco47I GGWCC 2 cut(s) 65, 562
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 2 cut(s) 183, 979
EcoICRI GAGCTC 1 cut(s) 11
EcoRII CCWGG 2 cut(s) 691, 1002
EcoT14I CCWWGG 2 cut(s) 222, 765
EcoT38I GRGCYC 2 cut(s) 13, 933
ErhI CCWWGG 2 cut(s) 222, 765
Esp3I CGTCTC 1 cut(s) 664
FaeI CATG 5 cut(s) 251, 492, 509, 594, 955
FalI AAGNNNNNCTT 2 cut(s) 605, 637
FaqI GGGAC 1 cut(s) 100
FatI CATG 5 cut(s) 247, 488, 505, 590, 951
Fnu4HI GCNGC 4 cut(s) 254, 498, 702, 1020
FriOI GRGCYC 2 cut(s) 13, 933
Fsp4HI GCNGC 4 cut(s) 254, 498, 702, 1020
GlaI GCGC 1 cut(s) 99
GluI GCNGC 4 cut(s) 254, 498, 702, 1020
GsaI CCCAGC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 826
HaeIII GGCC 5 cut(s) 38, 55, 581, 595, 931
HapII CCGG 4 cut(s) 107, 863, 919, 963
HgaI GACGC 1 cut(s) 481
HhaI GCGC 1 cut(s) 100
Hin1I GRCGYC 2 cut(s) 473, 885
Hin1II CATG 5 cut(s) 251, 492, 509, 594, 955
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HindIII AAGCTT 1 cut(s) 680
HinfI GANTC 9 cut(s) 41, 47, 311, 346, 425, 840, 966, 999, 1085
HpaII CCGG 4 cut(s) 107, 863, 919, 963
HphI GGTGA 3 cut(s) 210, 481, 681
Hpy166II GTNNAC 3 cut(s) 443, 532, 1015
Hpy188I TCNGA 7 cut(s) 46, 298, 412, 721, 998, 1090, 1129
Hpy188III TCNNGA 6 cut(s) 6, 434, 506, 805, 832, 919
Hpy8I GTNNAC 3 cut(s) 443, 532, 1015
Hpy99I CGWCG 3 cut(s) 246, 1103, 1129
HpyAV CCTTC 2 cut(s) 958, 1019
HpyCH4III ACNGT 3 cut(s) 447, 549, 937
HpyCH4IV ACGT 3 cut(s) 89, 754, 885
HpyCH4V TGCA 5 cut(s) 262, 638, 704, 752, 955
HpyF10VI GCNNNNNNNGC 4 cut(s) 244, 253, 259, 592
HpyF3I CTNAG 4 cut(s) 122, 132, 450, 1115
HpySE526I ACGT 3 cut(s) 89, 754, 885
Hsp92I GRCGYC 2 cut(s) 473, 885
Hsp92II CATG 5 cut(s) 251, 492, 509, 594, 955
HspAI GCGC 1 cut(s) 98
Kpn2I TCCGGA 1 cut(s) 918
Kzo9I GATC 2 cut(s) 484, 646
LmnI GCTCC 3 cut(s) 8, 16, 807
Lsp1109I GCAGC 4 cut(s) 265, 484, 688, 1006
LweI GCATC 3 cut(s) 289, 338, 1053
MaeII ACGT 3 cut(s) 89, 754, 885
MaeIII GTNAC 1 cut(s) 469
MalI GATC 2 cut(s) 486, 648
MboI GATC 2 cut(s) 484, 646
MboII GAAGA 6 cut(s) 176, 181, 466, 524, 688, 921
MhlI GDGCHC 2 cut(s) 13, 933
MluCI AATT 4 cut(s) 137, 268, 665, 728
MlyI GAGTC 2 cut(s) 56, 419
MmeI TCCRAC 1 cut(s) 1107
MroI TCCGGA 1 cut(s) 918
MseI TTAA 2 cut(s) 605, 867
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 4 cut(s) 107, 863, 919, 963
MspR9I CCNGG 2 cut(s) 693, 1004
Mva1269I GAATGC 3 cut(s) 214, 286, 754
MvaI CCWGG 2 cut(s) 693, 1004
MvnI CGCG 1 cut(s) 100
MwoI GCNNNNNNNGC 4 cut(s) 244, 253, 259, 592
NdeII GATC 2 cut(s) 484, 646
NlaIII CATG 5 cut(s) 251, 492, 509, 594, 955
NlaIV GGNNCC 3 cut(s) 861, 917, 931
NmeAIII GCCGAG 2 cut(s) 607, 832
NmuCI GTSAC 1 cut(s) 469
PagI TCATGA 1 cut(s) 505
PctI GAATGC 3 cut(s) 214, 286, 754
PfeI GAWTC 7 cut(s) 41, 311, 346, 840, 966, 999, 1085
PflMI CCANNNNNTGG 1 cut(s) 62
PfoI TCCNGGA 1 cut(s) 1002
PkrI GCNGC 4 cut(s) 255, 499, 703, 1021
PleI GAGTC 2 cut(s) 55, 419
PpsI GAGTC 2 cut(s) 55, 419
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 691, 1002
PspFI CCCAGC 1 cut(s) 71
PspGI CCWGG 2 cut(s) 691, 1002
PspN4I GGNNCC 3 cut(s) 861, 917, 931
PspOMI GGGCCC 1 cut(s) 929
PspPI GGNCC 4 cut(s) 65, 562, 929, 930
PvuII CAGCTG 1 cut(s) 161
RsaI GTAC 2 cut(s) 531, 800
RsaNI GTAC 2 cut(s) 530, 799
SacI GAGCTC 1 cut(s) 13
SaqAI TTAA 2 cut(s) 605, 867
SatI GCNGC 4 cut(s) 254, 498, 702, 1020
Sau3AI GATC 2 cut(s) 484, 646
Sau96I GGNCC 4 cut(s) 65, 562, 929, 930
SchI GAGTC 2 cut(s) 56, 419
ScrFI CCNGG 2 cut(s) 693, 1004
SduI GDGCHC 2 cut(s) 13, 933
SfaNI GCATC 3 cut(s) 289, 338, 1053
SinI GGWCC 2 cut(s) 65, 562
Sse9I AATT 4 cut(s) 137, 268, 665, 728
SsiI CCGC 2 cut(s) 212, 1022
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 2 cut(s) 691, 1002
StyI CCWWGG 2 cut(s) 222, 765
TaaI ACNGT 3 cut(s) 447, 549, 937
TaiI ACGT 3 cut(s) 92, 757, 888
TaqI TCGA 1 cut(s) 831
TaqII GACCGA 1 cut(s) 339
TasI AATT 4 cut(s) 137, 268, 665, 728
TatI WGTACW 2 cut(s) 529, 798
TfiI GAWTC 7 cut(s) 41, 311, 346, 840, 966, 999, 1085
Tru1I TTAA 2 cut(s) 605, 867
Tru9I TTAA 2 cut(s) 605, 867
TscAI CASTG 5 cut(s) 63, 100, 126, 240, 940
TseFI GTSAC 1 cut(s) 469
TseI GCWGC 4 cut(s) 253, 497, 701, 1019
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 7 cut(s) 144, 218, 282, 494, 525, 579, 940
TspGWI ACGGA 4 cut(s) 323, 1047, 1085, 1087
TspRI CASTG 5 cut(s) 63, 100, 126, 240, 940
Van91I CCANNNNNTGG 1 cut(s) 62
VpaK11BI GGWCC 2 cut(s) 65, 562
XapI RAATTY 1 cut(s) 137
ZraI GACGTC 1 cut(s) 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.