MD02G1007800.v1.1

Methyladenine glycosylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0015324
Physical Location & Seq
Forward (+)
490983 .. 495330
4348 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1007800.v1.1.491

Sequence Viewer

Length: 1137 bp
ATGTCAGGAGCTCCAAGAGTAAGGTCTATCAATGTGGCTGATTCAGAGTCAAGGCCAGTGCTTGGACCTGCTGGGAACAAGGCAGGGACGTTCAGTGCGCGAAAACCGGCTTCAAAACCACTGAGAAAGGCTGAGAAATTCGGCGAGGAGGTTTCATCAGCTGAAGAGAAGAAAACCCGTCAATCTCCAATGCTTACTACCTCTCCTCAACCGCATTCACCCAAGGTTCATTCAGTGCTTCGTCGGCACGAGCAGCTATTGCACTCTAATCTTTCGCTAAATGCATCTTGTTCATCGGATGCCTCTACGGATTCGTTTCATAGTAGATCATCCACGGGTAGGCTGATTCGATCAAATAGTGTAGGGAGTGGGAGGAAGCAGTATGTTTCAAAGCCGAGAAGTGTTGTTTCTGATGGTGGATTGGACTCTCCTCATGATGGTTCACAGTCTAAGAAGAGATGCGCTTGGGTGACGCCAAATACTGATCCATGTTATGCTGCTTTTCATGATGAAGAATGGGGGCTTCCAGTACACGATGATAAGAAACTGTTTGAGCTTCTGGTCCTATCAGGTGCTTTGGCTGAGCTTTCATGGCCTGCCATTTTAAGCAAAAAACACATCTTTAGGGAAGTTTTTGCACATTTTGATCCCATTGCCGTTTCAAAATTGAATGAGAAGAAGCTAATAGCACCAGGAAGTGCTGCGAGTTCCCTATTGTCTGAACCGAAGTTGCGTGCTGTCATTGAGAATGCACGTCAAACAACCAAGGTCATAGAGGAATTTGGGTCATTTGACAAGTATATCTGGAGCTTTGTGAATAACAAGCCCATCGTCAGCCGATTCCGGTATCCTCGGCAGGTTCCGGCAAAAACTCCAAAAGCAGACGTCATAAGCAAAGACCTTGTAAGAAGAGGGTTCCGGAGTGTGGGGCCCACTGTCGTTTACTCTTTCATGCAGGTCGCCGGAATCACCAACGACCACCTCATTGGTTGCTTCAGATTCCAGGAGTGCGTAAACGCCGCGGAAGGGAAGGGAGAGAACGGCACCAAGGATGAGGCTGGAAAGAAAACGGAGAACGGGATAGAATCGGAGTTATCGGTTGCCATAGACGAGTTGAGTTTCTCGTCGGACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
Adenine_glyco

Protein Analysis

379

Amino Acids

41.39

Weight (kDa)

9.36

Isoelectric Point (pI)

51.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adenine_glyco PF03352 160 - 333 2.7e-65 Methyladenine glycosylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57970 AT5G57970
fragaria_vesca FvH4_1g00950 FvH4_1g00950
malus_domestica MD02G1007800.v1.1
prunus_persica Prupe.7G262700_v2.0.a1
pyrus_communis pycom02g00670 pycom15g13660
rosa_chinensis RchiOBHm_Chr2g0085681
rosa_laevigata RLG00000015711
rosa_multiflora Rmu_sc0007631.1_g000006
rosa_roxburghii Rroxscaffold_2G00155130
rosa_rugosa Rorug01G0462200
rosa_samantha Rh2BG011900 Rh2CG012700
rosa_wichuraiana Rw2G001010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 888
Acc36I ACCTGC 3 cut(s) 76, 847, 946
AccB1I GGYRCC 1 cut(s) 1043
AccB7I CCANNNNNTGG 1 cut(s) 62
AccII CGCG 2 cut(s) 100, 1022
AccIII TCCGGA 1 cut(s) 918
AciI CCGC 3 cut(s) 212, 1020, 1022
AclWI GGATC 2 cut(s) 479, 641
AcsI RAATTY 2 cut(s) 137, 779
AcuI CTGAAG 2 cut(s) 183, 979
AcyI GRCGYC 2 cut(s) 473, 885
AfaI GTAC 1 cut(s) 531
AfiI CCNNNNNNNGG 5 cut(s) 62, 339, 437, 925, 1026
AgsI TTSAA 4 cut(s) 114, 390, 663, 670
AjiI CACGTC 1 cut(s) 755
AjnI CCWGG 2 cut(s) 691, 1002
AluBI AGCT 7 cut(s) 11, 161, 256, 556, 586, 682, 810
AluI AGCT 7 cut(s) 11, 161, 256, 556, 586, 682, 810
Alw21I GWGCWC 1 cut(s) 13
AlwI GGATC 2 cut(s) 479, 641
Aor13HI TCCGGA 1 cut(s) 918
AoxI GGCC 3 cut(s) 53, 593, 929
ApaI GGGCCC 1 cut(s) 933
ApeKI GCWGC 3 cut(s) 253, 497, 701
ApoI RAATTY 2 cut(s) 137, 779
AspLEI GCGC 2 cut(s) 100, 464
AspS9I GGNCC 4 cut(s) 65, 562, 929, 930
AsuHPI GGTGA 3 cut(s) 210, 481, 961
AvaII GGWCC 2 cut(s) 65, 562
BaeGI GKGCMC 1 cut(s) 933
BanI GGYRCC 1 cut(s) 1043
BanII GRGCYC 2 cut(s) 13, 933
BauI CACGAG 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 3 cut(s) 265, 484, 688
BccI CCATC 3 cut(s) 407, 431, 836
BceAI ACGGC 2 cut(s) 641, 1057
BciT130I CCWGG 2 cut(s) 693, 1004
BciVI GTATCC 1 cut(s) 858
BfuAI ACCTGC 3 cut(s) 76, 847, 946
BfuI GTATCC 1 cut(s) 858
BisI GCNGC 4 cut(s) 254, 498, 702, 1020
BlpI GCTNAGC 1 cut(s) 582
BlsI GCNGC 4 cut(s) 255, 499, 703, 1021
Bme1390I CCNGG 2 cut(s) 693, 1004
Bme18I GGWCC 2 cut(s) 65, 562
BmgBI CACGTC 1 cut(s) 755
BmgT120I GGNCC 4 cut(s) 65, 562, 929, 930
BmiI GGNNCC 5 cut(s) 861, 917, 930, 931, 1045
BmrFI CCNGG 2 cut(s) 693, 1004
BmsI GCATC 3 cut(s) 289, 293, 449
BpmI CTGGAG 1 cut(s) 826
Bpu1102I GCTNAGC 1 cut(s) 582
BsaHI GRCGYC 2 cut(s) 473, 885
BsaJI CCNNGG 6 cut(s) 222, 333, 765, 851, 1020, 1047
BsaWI WCCGGW 2 cut(s) 843, 918
BsaXI ACNNNNNCTCC 2 cut(s) 187, 217
Bsc4I CCNNNNNNNGG 5 cut(s) 62, 339, 437, 925, 1026
Bse118I RCCGGY 1 cut(s) 106
Bse1I ACTGG 2 cut(s) 56, 527
Bse3DI GCAATG 1 cut(s) 651
BseAI TCCGGA 1 cut(s) 918
BseBI CCWGG 2 cut(s) 693, 1004
BseDI CCNNGG 6 cut(s) 222, 333, 765, 851, 1020, 1047
BseGI GGATG 3 cut(s) 304, 329, 1057
BseLI CCNNNNNNNGG 5 cut(s) 62, 339, 437, 925, 1026
BseMI GCAATG 1 cut(s) 651
BseMII CTCAG 3 cut(s) 113, 123, 573
BseNI ACTGG 2 cut(s) 56, 527
BseRI GAGGAG 3 cut(s) 161, 195, 420
BseSI GKGCMC 1 cut(s) 933
BseXI GCAGC 3 cut(s) 265, 484, 688
BseYI CCCAGC 1 cut(s) 71
Bsh1236I CGCG 2 cut(s) 100, 1022
BshFI GGCC 3 cut(s) 55, 595, 931
BshNI GGYRCC 1 cut(s) 1043
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 5 cut(s) 107, 844, 863, 919, 963
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 5 cut(s) 62, 339, 437, 925, 1026
BsmFI GGGAC 1 cut(s) 100
BsmI GAATGC 2 cut(s) 214, 754
BsnI GGCC 3 cut(s) 55, 595, 931
Bsp120I GGGCCC 1 cut(s) 929
Bsp1286I GDGCHC 2 cut(s) 13, 933
Bsp13I TCCGGA 1 cut(s) 918
Bsp143I GATC 4 cut(s) 326, 350, 484, 646
Bsp1720I GCTNAGC 1 cut(s) 582
BspACI CCGC 3 cut(s) 212, 1020, 1022
BspANI GGCC 3 cut(s) 55, 595, 931
BspCNI CTCAG 3 cut(s) 114, 124, 574
BspEI TCCGGA 1 cut(s) 918
BspFNI CGCG 2 cut(s) 100, 1022
BspHI TCATGA 2 cut(s) 433, 505
BspLI GGNNCC 5 cut(s) 861, 917, 930, 931, 1045
BspMI ACCTGC 3 cut(s) 76, 847, 946
BspPI GGATC 2 cut(s) 479, 641
BspT107I GGYRCC 1 cut(s) 1043
BsrDI GCAATG 1 cut(s) 651
BsrFI RCCGGY 1 cut(s) 106
BsrI ACTGG 2 cut(s) 56, 527
BssAI RCCGGY 1 cut(s) 106
BssECI CCNNGG 6 cut(s) 222, 333, 765, 851, 1020, 1047
BssMI GATC 4 cut(s) 326, 350, 484, 646
BssNI GRCGYC 2 cut(s) 473, 885
BssSI CACGAG 1 cut(s) 248
BssT1I CCWWGG 3 cut(s) 222, 765, 1047
Bst2BI CACGAG 1 cut(s) 248
Bst2UI CCWGG 2 cut(s) 693, 1004
Bst4CI ACNGT 3 cut(s) 447, 549, 937
Bst6I CTCTTC 3 cut(s) 159, 449, 904
BstACI GRCGYC 2 cut(s) 473, 885
BstAPI GCANNNNNTGC 1 cut(s) 259
BstC8I GCNNGC 2 cut(s) 597, 735
BstDEI CTNAG 4 cut(s) 122, 132, 450, 582
BstDSI CCRYGG 2 cut(s) 333, 1020
BstF5I GGATG 3 cut(s) 304, 329, 1057
BstFNI CGCG 2 cut(s) 100, 1022
BstHHI GCGC 2 cut(s) 100, 464
BstKTI GATC 4 cut(s) 329, 353, 487, 649
BstMBI GATC 4 cut(s) 326, 350, 484, 646
BstMWI GCNNNNNNNGC 4 cut(s) 244, 253, 259, 592
BstNI CCWGG 2 cut(s) 693, 1004
BstSCI CCNGG 2 cut(s) 691, 1002
BstSLI GKGCMC 1 cut(s) 933
BstUI CGCG 2 cut(s) 100, 1022
BstV1I GCAGC 3 cut(s) 265, 484, 688
BstXI CCANNNNNNTGG 1 cut(s) 986
BsuI GTATCC 1 cut(s) 858
BsuRI GGCC 3 cut(s) 55, 595, 931
BtgI CCRYGG 2 cut(s) 333, 1020
BtrI CACGTC 1 cut(s) 755
BtsCI GGATG 3 cut(s) 304, 329, 1057
BtsIMutI CAGTG 5 cut(s) 63, 100, 119, 240, 933
BveI ACCTGC 3 cut(s) 76, 847, 946
Cac8I GCNNGC 2 cut(s) 597, 735
CciI TCATGA 2 cut(s) 433, 505
CfoI GCGC 2 cut(s) 100, 464
Cfr10I RCCGGY 1 cut(s) 106
Cfr13I GGNCC 4 cut(s) 65, 562, 929, 930
Cfr42I CCGCGG 1 cut(s) 1023
CseI GACGC 1 cut(s) 481
Csp6I GTAC 1 cut(s) 530
CviAII CATG 5 cut(s) 434, 489, 506, 591, 952
CviQI GTAC 1 cut(s) 530
DdeI CTNAG 4 cut(s) 122, 132, 450, 582
DpnI GATC 4 cut(s) 328, 352, 486, 648
DpnII GATC 4 cut(s) 326, 350, 484, 646
Eam1104I CTCTTC 3 cut(s) 159, 449, 904
EarI CTCTTC 3 cut(s) 159, 449, 904
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 3 cut(s) 222, 765, 1047
Eco24I GRGCYC 2 cut(s) 13, 933
Eco47I GGWCC 2 cut(s) 65, 562
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 2 cut(s) 183, 979
EcoICRI GAGCTC 1 cut(s) 11
EcoO109I RGGNCCY 1 cut(s) 929
EcoRII CCWGG 2 cut(s) 691, 1002
EcoT14I CCWWGG 3 cut(s) 222, 765, 1047
EcoT22I ATGCAT 1 cut(s) 286
EcoT38I GRGCYC 2 cut(s) 13, 933
ErhI CCWWGG 3 cut(s) 222, 765, 1047
FaeI CATG 5 cut(s) 437, 492, 509, 594, 955
FaqI GGGAC 1 cut(s) 100
FatI CATG 5 cut(s) 433, 488, 505, 590, 951
Fnu4HI GCNGC 4 cut(s) 254, 498, 702, 1020
FokI GGATG 3 cut(s) 311, 316, 1064
FriOI GRGCYC 2 cut(s) 13, 933
Fsp4HI GCNGC 4 cut(s) 254, 498, 702, 1020
GlaI GCGC 2 cut(s) 99, 463
GluI GCNGC 4 cut(s) 254, 498, 702, 1020
GsaI CCCAGC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 826
HaeIII GGCC 3 cut(s) 55, 595, 931
HapII CCGG 5 cut(s) 107, 844, 863, 919, 963
HgaI GACGC 1 cut(s) 481
HhaI GCGC 2 cut(s) 100, 464
Hin1I GRCGYC 2 cut(s) 473, 885
Hin1II CATG 5 cut(s) 437, 492, 509, 594, 955
Hin6I GCGC 2 cut(s) 98, 462
HinP1I GCGC 2 cut(s) 98, 462
HinfI GANTC 9 cut(s) 41, 47, 311, 346, 425, 840, 966, 999, 1085
HpaII CCGG 5 cut(s) 107, 844, 863, 919, 963
HphI GGTGA 3 cut(s) 210, 481, 961
Hpy166II GTNNAC 4 cut(s) 443, 532, 943, 1015
Hpy188I TCNGA 7 cut(s) 46, 298, 412, 721, 998, 1090, 1129
Hpy188III TCNNGA 5 cut(s) 6, 434, 506, 805, 919
Hpy8I GTNNAC 4 cut(s) 443, 532, 943, 1015
Hpy99I CGWCG 2 cut(s) 246, 1129
HpyAV CCTTC 2 cut(s) 1019, 1024
HpyCH4III ACNGT 3 cut(s) 447, 549, 937
HpyCH4IV ACGT 3 cut(s) 89, 754, 885
HpyCH4V TGCA 5 cut(s) 262, 284, 638, 752, 955
HpyF10VI GCNNNNNNNGC 4 cut(s) 244, 253, 259, 592
HpyF3I CTNAG 4 cut(s) 122, 132, 450, 582
HpySE526I ACGT 3 cut(s) 89, 754, 885
Hsp92I GRCGYC 2 cut(s) 473, 885
Hsp92II CATG 5 cut(s) 437, 492, 509, 594, 955
HspAI GCGC 2 cut(s) 98, 462
Kpn2I TCCGGA 1 cut(s) 918
KspI CCGCGG 1 cut(s) 1023
Kzo9I GATC 4 cut(s) 326, 350, 484, 646
LmnI GCTCC 3 cut(s) 8, 16, 807
Lsp1109I GCAGC 3 cut(s) 265, 484, 688
LweI GCATC 3 cut(s) 289, 293, 449
MaeII ACGT 3 cut(s) 89, 754, 885
MaeIII GTNAC 1 cut(s) 469
MalI GATC 4 cut(s) 328, 352, 486, 648
MboI GATC 4 cut(s) 326, 350, 484, 646
MboII GAAGA 6 cut(s) 176, 181, 466, 524, 688, 921
MhlI GDGCHC 2 cut(s) 13, 933
MluCI AATT 3 cut(s) 137, 665, 779
MlyI GAGTC 2 cut(s) 56, 419
MmeI TCCRAC 1 cut(s) 1107
Mph1103I ATGCAT 1 cut(s) 286
MroI TCCGGA 1 cut(s) 918
MseI TTAA 1 cut(s) 605
MspA1I CMGCKG 2 cut(s) 161, 1022
MspI CCGG 5 cut(s) 107, 844, 863, 919, 963
MspR9I CCNGG 2 cut(s) 693, 1004
Mva1269I GAATGC 2 cut(s) 214, 754
MvaI CCWGG 2 cut(s) 693, 1004
MvnI CGCG 2 cut(s) 100, 1022
MwoI GCNNNNNNNGC 4 cut(s) 244, 253, 259, 592
NdeII GATC 4 cut(s) 326, 350, 484, 646
NlaIII CATG 5 cut(s) 437, 492, 509, 594, 955
NlaIV GGNNCC 5 cut(s) 861, 917, 930, 931, 1045
NmeAIII GCCGAG 2 cut(s) 420, 832
NmuCI GTSAC 1 cut(s) 469
NsiI ATGCAT 1 cut(s) 286
PagI TCATGA 2 cut(s) 433, 505
PctI GAATGC 2 cut(s) 214, 754
PfeI GAWTC 7 cut(s) 41, 311, 346, 840, 966, 999, 1085
PflMI CCANNNNNTGG 1 cut(s) 62
PfoI TCCNGGA 1 cut(s) 1002
PkrI GCNGC 4 cut(s) 255, 499, 703, 1021
PleI GAGTC 2 cut(s) 55, 419
PpsI GAGTC 2 cut(s) 55, 419
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 691, 1002
PspFI CCCAGC 1 cut(s) 71
PspGI CCWGG 2 cut(s) 691, 1002
PspN4I GGNNCC 5 cut(s) 861, 917, 930, 931, 1045
PspOMI GGGCCC 1 cut(s) 929
PspPI GGNCC 4 cut(s) 65, 562, 929, 930
PvuII CAGCTG 1 cut(s) 161
RsaI GTAC 1 cut(s) 531
RsaNI GTAC 1 cut(s) 530
SacI GAGCTC 1 cut(s) 13
SacII CCGCGG 1 cut(s) 1023
SaqAI TTAA 1 cut(s) 605
SatI GCNGC 4 cut(s) 254, 498, 702, 1020
Sau3AI GATC 4 cut(s) 326, 350, 484, 646
Sau96I GGNCC 4 cut(s) 65, 562, 929, 930
SchI GAGTC 2 cut(s) 56, 419
ScrFI CCNGG 2 cut(s) 693, 1004
SduI GDGCHC 2 cut(s) 13, 933
SfaNI GCATC 3 cut(s) 289, 293, 449
Sfr303I CCGCGG 1 cut(s) 1023
SgrBI CCGCGG 1 cut(s) 1023
SinI GGWCC 2 cut(s) 65, 562
Sse9I AATT 3 cut(s) 137, 665, 779
SsiI CCGC 3 cut(s) 212, 1020, 1022
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 2 cut(s) 691, 1002
StyI CCWWGG 3 cut(s) 222, 765, 1047
TaaI ACNGT 3 cut(s) 447, 549, 937
TaiI ACGT 3 cut(s) 92, 757, 888
TaqI TCGA 1 cut(s) 349
TasI AATT 3 cut(s) 137, 665, 779
TatI WGTACW 1 cut(s) 529
TauI GCSGC 1 cut(s) 1022
TfiI GAWTC 7 cut(s) 41, 311, 346, 840, 966, 999, 1085
Tru1I TTAA 1 cut(s) 605
Tru9I TTAA 1 cut(s) 605
TscAI CASTG 5 cut(s) 63, 100, 126, 240, 940
TseFI GTSAC 1 cut(s) 469
TseI GCWGC 3 cut(s) 253, 497, 701
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 8 cut(s) 144, 218, 282, 308, 494, 525, 579, 940
TspGWI ACGGA 2 cut(s) 323, 1085
TspRI CASTG 5 cut(s) 63, 100, 126, 240, 940
Van91I CCANNNNNTGG 1 cut(s) 62
VpaK11BI GGWCC 2 cut(s) 65, 562
XapI RAATTY 2 cut(s) 137, 779
ZraI GACGTC 1 cut(s) 886
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.