Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014104

Physical Location & Seq

Genomic Coordinates Forward (+)

23734273 .. 23735767

Gene Structure 1495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G58770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGTTATCTCTACGAGTTCCTACTCCCACTTCCTTCGATTTCCGGCGATATCAAGCCGGAGATTTAGAGCGGCGATGGCGGTTAAGTAGAGATAGCTTTCTCTCTTTCTCGCCAAAATTCGAGGAAAACAGAGGATTCCGATTCGGAGTCAAATCTTCCAAATCGGATGTTTCGTTTACGGCGGCGGAGGAAGAAGAAACTCTGCCGGAAGAGCTACATGCAGAGCTGATGCCGAAACATGTGGCGATTATAATGGACGGAAACGGAAGATGGGCGAAGAATCGTGGTCTTCAACCTTGGGATGGTCACAGAGCTGGCGTTGAAGCTTTGAAAGAGATCGTTGAGCTTTGTGGTAAATGGGGAATTCAAGTCCTTACAGTTTTCGCTTTCTCTACTGATAATTGGATTAGACCAAGAATTGAGATTGATTTCTTGTTTAGTTTATTTGAGAGATCACTCAAAACAGAATTTCAGAACTTAGCCAAGAACAATGTTCGGATATCGATCATTGGAGATTCCTCGAAACTTCCGAAATCTCTTTTAAGAGTGATTAACGAAGTTGAGGAAGTTACAAAGAACAACACGAGGCTTCAGCTAATCGTAGCGGTTGGTTACAGTGGGAAATACGATGTTTTACAAGCGTGTAGAGGTATCGCGAGGAGAGTGAAAGATGGCGAAATCGAAGTTGAGGAGATAGACGAGAGACTGATTGAGGAAGAATTGGAGACGAATTGTACTGAGTTTCCTTACCCGGATTTACTTATAAGAACGAGTGGTGAGCTTAGAGTGAGTAACTTCTTGTTGTGGCAATTGGCTTATACAGAGCTTTTCTTTGCTCAAGAACTTTGGCCTGATTTTGGGAGAAGCGGTTTTATCGAAGCTTTGATGTCGTTTCAGCAGAGACAACGACGCTTTGGTGGTCGTAAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002094 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006066 GO:0006629 GO:0006720 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009668 GO:0009987 GO:0012505 GO:0016043 GO:0016093 GO:0016094 GO:0016740 GO:0016765 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0050267 GO:0050896 GO:0061024 GO:0071704 GO:0071840 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

Prenyltransf

Protein Analysis

310

Amino Acids

35.94

Weight (kDa)

5.88

Isoelectric Point (pI)

57.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltransf	PF01255	84 - 306	4.8e-81	Putative undecaprenyl diphosphate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58770
fragaria_vesca	FvH4_3g38480
malus_domestica	MD03G1071400.v1.1 MD03G1071500.v1.1
prunus_persica	Prupe.6G058100_v2.0.a1 Prupe.6G058100_v2.0.a1 Prupe.6G058100_v2.0.a1
pyrus_communis	pycom03g05760 pycom03g05770
rosa_chinensis	RchiOBHm_Chr5g0069331
rosa_laevigata	RLG00000036047
rosa_multiflora	Rmu_sc0002658.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011570
rosa_rugosa	Rorug05G0397000
rosa_samantha	Rh5BG472800 Rh5CG495400 Rh5DG485200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	251, 764
AccBSI	CCGCTC	1 cut(s)	70
AccII	CGCG	1 cut(s)	656
AciI	CCGC	6 cut(s)	70, 79, 182, 185, 605, 867
AcsI	RAATTY	3 cut(s)	116, 363, 467
AcuI	CTGAAG	1 cut(s)	575
AfaI	GTAC	1 cut(s)	736
AfiI	CCNNNNNNNGG	2 cut(s)	302, 857
AflIII	ACRYGT	1 cut(s)	238
AgsI	TTSAA	4 cut(s)	293, 323, 331, 368
Alw26I	GTCTC	3 cut(s)	697, 719, 895
AoxI	GGCC	1 cut(s)	848
ApoI	RAATTY	3 cut(s)	116, 363, 467
AsuC2I	CCSGG	1 cut(s)	752
AsuHPI	GGTGA	1 cut(s)	788
BauI	CACGAG	1 cut(s)	583
BbsI	GAAGAC	1 cut(s)	281
BccI	CCATC	4 cut(s)	69, 264, 296, 665
BceAI	ACGGC	1 cut(s)	195
BcnI	CCSGG	1 cut(s)	752
BcoDI	GTCTC	3 cut(s)	697, 719, 895
BisI	GCNGC	2 cut(s)	71, 183
BlsI	GCNGC	2 cut(s)	72, 184
Bme1390I	CCNGG	1 cut(s)	752
BmrFI	CCNGG	1 cut(s)	752
BmsI	GCATC	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	822
BpuMI	CCSGG	1 cut(s)	752
Bsa29I	ATCGAT	1 cut(s)	503
BsaBI	GATNNNNATC	1 cut(s)	503
BsaJI	CCNNGG	1 cut(s)	296
BsaXI	ACNNNNNCTCC	2 cut(s)	853, 883
Bsc4I	CCNNNNNNNGG	2 cut(s)	302, 857
Bse8I	GATNNNNATC	1 cut(s)	503
BseCI	ATCGAT	1 cut(s)	503
BseDI	CCNNGG	1 cut(s)	296
BseGI	GGATG	2 cut(s)	172, 307
BseJI	GATNNNNATC	1 cut(s)	503
BseLI	CCNNNNNNNGG	2 cut(s)	302, 857
BseMII	CTCAG	1 cut(s)	729
BseRI	GAGGAG	2 cut(s)	673, 704
Bsh1236I	CGCG	1 cut(s)	656
BshFI	GGCC	1 cut(s)	850
BshVI	ATCGAT	1 cut(s)	503
BsiSI	CCGG	4 cut(s)	43, 57, 206, 752
BslI	CCNNNNNNNGG	2 cut(s)	302, 857
BsmAI	GTCTC	3 cut(s)	697, 719, 895
BsmBI	CGTCTC	1 cut(s)	719
BsnI	GGCC	1 cut(s)	850
Bsp143I	GATC	3 cut(s)	336, 452, 504
Bsp68I	TCGCGA	1 cut(s)	656
BspACI	CCGC	6 cut(s)	70, 79, 182, 185, 605, 867
BspANI	GGCC	1 cut(s)	850
BspCNI	CTCAG	1 cut(s)	730
BspDI	ATCGAT	1 cut(s)	503
BspFNI	CGCG	1 cut(s)	656
BspQI	GCTCTTC	1 cut(s)	204
BsrBI	CCGCTC	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	3 cut(s)	336, 452, 504
BssSI	CACGAG	1 cut(s)	583
BssT1I	CCWWGG	1 cut(s)	296
Bst2BI	CACGAG	1 cut(s)	583
Bst4CI	ACNGT	2 cut(s)	379, 617
Bst6I	CTCTTC	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	3 cut(s)	478, 738, 782
BstF5I	GGATG	2 cut(s)	172, 307
BstFNI	CGCG	1 cut(s)	656
BstKTI	GATC	3 cut(s)	339, 455, 507
BstMAI	GTCTC	3 cut(s)	697, 719, 895
BstMBI	GATC	3 cut(s)	336, 452, 504
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 211
BstNSI	RCATGY	2 cut(s)	221, 242
BstSCI	CCNGG	1 cut(s)	750
BstUI	CGCG	1 cut(s)	656
BstV2I	GAAGAC	1 cut(s)	281
Bsu15I	ATCGAT	1 cut(s)	503
BsuRI	GGCC	1 cut(s)	850
BsuTUI	ATCGAT	1 cut(s)	503
BtgZI	GCGATG	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	172, 307
BtsIMutI	CAGTG	1 cut(s)	622
BtuMI	TCGCGA	1 cut(s)	656
Cac8I	GCNNGC	1 cut(s)	316
ClaI	ATCGAT	1 cut(s)	503
CseI	GACGC	1 cut(s)	918
Csp6I	GTAC	1 cut(s)	735
CviAII	CATG	2 cut(s)	218, 239
CviQI	GTAC	1 cut(s)	735
DdeI	CTNAG	3 cut(s)	478, 738, 782
DpnI	GATC	3 cut(s)	338, 454, 506
DpnII	GATC	3 cut(s)	336, 452, 504
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
EciI	GGCGGA	1 cut(s)	200
Eco130I	CCWWGG	1 cut(s)	296
Eco32I	GATATC	2 cut(s)	50, 501
Eco57I	CTGAAG	1 cut(s)	575
EcoRI	GAATTC	1 cut(s)	363
EcoRV	GATATC	2 cut(s)	50, 501
EcoT14I	CCWWGG	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	296
Esp3I	CGTCTC	1 cut(s)	719
FaeI	CATG	2 cut(s)	221, 242
FaiI	YATR	5 cut(s)	219, 240, 251, 764, 819
FatI	CATG	2 cut(s)	217, 238
Fnu4HI	GCNGC	2 cut(s)	71, 183
FokI	GGATG	2 cut(s)	179, 314
Fsp4HI	GCNGC	2 cut(s)	71, 183
GluI	GCNGC	2 cut(s)	71, 183
HaeIII	GGCC	1 cut(s)	850
HapII	CCGG	4 cut(s)	43, 57, 206, 752
HgaI	GACGC	1 cut(s)	918
Hin1II	CATG	2 cut(s)	221, 242
HindIII	AAGCTT	2 cut(s)	324, 879
HinfI	GANTC	5 cut(s)	135, 141, 147, 280, 515
HpaII	CCGG	4 cut(s)	43, 57, 206, 752
HphI	GGTGA	1 cut(s)	788
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188I	TCNGA	6 cut(s)	140, 146, 166, 474, 498, 531
Hpy188III	TCNNGA	3 cut(s)	655, 839, 930
Hpy8I	GTNNAC	1 cut(s)	177
Hpy99I	CGWCG	1 cut(s)	912
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	2 cut(s)	379, 617
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 211
HpyF3I	CTNAG	3 cut(s)	478, 738, 782
Hsp92II	CATG	2 cut(s)	221, 242
Kzo9I	GATC	3 cut(s)	336, 452, 504
LguI	GCTCTTC	1 cut(s)	204
LpnPI	CCDG	6 cut(s)	56, 70, 219, 300, 765, 864
LweI	GCATC	1 cut(s)	219
MaeIII	GTNAC	4 cut(s)	305, 568, 611, 791
MalI	GATC	3 cut(s)	338, 454, 506
MbiI	CCGCTC	1 cut(s)	70
MboI	GATC	3 cut(s)	336, 452, 504
MboII	GAAGA	8 cut(s)	147, 203, 206, 221, 279, 281, 289, 728
MfeI	CAATTG	1 cut(s)	809
MluCI	AATT	8 cut(s)	116, 363, 400, 417, 467, 719, 730, 809
MlyI	GAGTC	1 cut(s)	156
MseI	TTAA	3 cut(s)	83, 542, 552
MspI	CCGG	4 cut(s)	43, 57, 206, 752
MspR9I	CCNGG	1 cut(s)	752
MunI	CAATTG	1 cut(s)	809
MvnI	CGCG	1 cut(s)	656
MwoI	GCNNNNNNNGC	2 cut(s)	76, 211
NciI	CCSGG	1 cut(s)	752
NdeII	GATC	3 cut(s)	336, 452, 504
NlaIII	CATG	2 cut(s)	221, 242
NmuCI	GTSAC	1 cut(s)	305
NruI	TCGCGA	1 cut(s)	656
NspI	RCATGY	2 cut(s)	221, 242
PciI	ACATGT	1 cut(s)	238
PciSI	GCTCTTC	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	2 cut(s)	170, 527
PfeI	GAWTC	4 cut(s)	135, 141, 280, 515
PkrI	GCNGC	2 cut(s)	72, 184
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PscI	ACATGT	1 cut(s)	238
PsiI	TTATAA	2 cut(s)	251, 764
RruI	TCGCGA	1 cut(s)	656
RsaI	GTAC	1 cut(s)	736
RsaNI	GTAC	1 cut(s)	735
SapI	GCTCTTC	1 cut(s)	204
SaqAI	TTAA	3 cut(s)	83, 542, 552
SatI	GCNGC	2 cut(s)	71, 183
Sau3AI	GATC	3 cut(s)	336, 452, 504
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	1 cut(s)	752
SfaNI	GCATC	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	837
SmoI	CTYRAG	1 cut(s)	837
Sse9I	AATT	8 cut(s)	116, 363, 400, 417, 467, 719, 730, 809
SsiI	CCGC	6 cut(s)	70, 79, 182, 185, 605, 867
StyD4I	CCNGG	1 cut(s)	750
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	2 cut(s)	379, 617
TaqI	TCGA	6 cut(s)	36, 120, 503, 521, 681, 876
TasI	AATT	8 cut(s)	116, 363, 400, 417, 467, 719, 730, 809
TatI	WGTACW	1 cut(s)	734
TauI	GCSGC	2 cut(s)	73, 185
TfiI	GAWTC	4 cut(s)	135, 141, 280, 515
Tru1I	TTAA	3 cut(s)	83, 542, 552
Tru9I	TTAA	3 cut(s)	83, 542, 552
TscAI	CASTG	1 cut(s)	622
TseFI	GTSAC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	305
TspGWI	ACGGA	2 cut(s)	273, 279
TspRI	CASTG	1 cut(s)	622
XapI	RAATTY	3 cut(s)	116, 363, 467
XceI	RCATGY	2 cut(s)	221, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.