pycom03g05770

Belongs to the UPP synthase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
4564549 .. 4568071
3523 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g05770.4

Sequence Viewer

Length: 1257 bp
ATGTGGTGGATAGCGGCCCCTCACAAGGGAGATGTTACTAATACAGTACAGTTAGGTGTGGACTTTGTTTATTATTCTCTTGCCATTTGGTCAGACCGCCACGGCCCCAATTTTTCATCAACACAGCAATATATATGGGTCCCACCAATAATATTTTTTGTACTTTATAGCGTGAGAAAGTTTCCAGAAAAACTACAAATTGTAATAATTCTCTCGCTAAATTGGCCTCTGCGTACGATTGTCCGAGTGTCTTCCAACTCTGCGAGGCTTAACGTTCAAACTCACGGAGGAGACGACGACGCAACAGTCCGCAGCATCATGTTCCTATCCCTGAGCTCTCCTATCCCAATCGAGAACGCCCTCATTCCCTTCAAACCGAGGTCCTCCCGCTCCCAAACACTCAGAATCCGAGCACATCCACTCCCCTCAAATCCACTATCTCTTCCTAGCTCAGCAGCAGCTGCTCCGGCTTTCAAGGAAGAGACGAGACAGTTTGCCCCTGGCGGAGACTTCCCGCTGGACGAGGAGTCGCTGCCCGCGGGTCTCCGGCGAGATTTGATGCCGAGGCACGTGGCGGTGATCATGGACGGTAACGTGAGGTGGGAGAAGCGGAGGGGGTTGCCGGCTGGGTCGGGTCACCAGGCCGGTGTACGGTCGGTGAGAGAGCTCATTGAGATGAGCTCCAAATGGGGGATTGGAGTTCTCACTGTTTTTGCCTTTTCGTATGATAATTGGAATCGGTCCAAGATGGAGGTTGGATTTTTGATGACATTGTTCGAGAAGATGATTACCGCCGAAATCGACAATTTGGCAAGGGACGGTGTCCGAATATCGATCATCGGAGATTCATCAAAGCTCCCAAATTCTTTACAAAAAGTGATAAGTGACGCGGAGGAGACAACGAAAGACAACTCTAGGCTCCACCTTATTGTGGCAGTGAGCTACAGCGGAAAATACGACGTTGTGCAAGCATGCAAAAGTATTTGTCATAAGGTAAAAGATGGCCTTGTTCAGGTGGACGATATCAATGAAAGCCTTGTCGAGCAAGAACTCGAAACTAACTGTACCGAGTTTCCCTACCCTGATCTTCTCATACGAACTGGGGGCGATATTCGAGTCAGCAACTTCTTGCTGTGGCAGTTGGCCTACACCGAACTTTTCTTTGTATCTGCTCTTTGGCCTGATTTCGGGAAAGCTGAGTTTGAGGAGGCTTTGACTTCGTTTCAGCGGAGGCAGAGGCGTTACGGTGGAAGATGA

Protein Analysis

419

Amino Acids

47.13

Weight (kDa)

7.74

Isoelectric Point (pI)

52.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014104)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 305
AccBSI CCGCTC 1 cut(s) 390
AccII CGCG 2 cut(s) 539, 890
AclI AACGTT 1 cut(s) 273
AcsI RAATTY 1 cut(s) 862
AcvI CACGTG 1 cut(s) 571
AfaI GTAC 5 cut(s) 48, 162, 235, 651, 1066
AfiI CCNNNNNNNGG 7 cut(s) 25, 26, 651, 690, 931, 1012, 1187
AgsI TTSAA 3 cut(s) 278, 373, 475
AhdI GACNNNNNGTC 1 cut(s) 526
AjnI CCWGG 2 cut(s) 499, 639
AluBI AGCT 8 cut(s) 336, 450, 461, 667, 681, 856, 942, 1196
AluI AGCT 8 cut(s) 336, 450, 461, 667, 681, 856, 942, 1196
Alw21I GWGCWC 4 cut(s) 338, 415, 669, 683
Alw26I GTCTC 6 cut(s) 285, 476, 481, 501, 548, 890
AlwNI CAGNNNCTG 1 cut(s) 461
AoxI GGCC 7 cut(s) 15, 103, 224, 642, 1003, 1143, 1178
ApeKI GCWGC 5 cut(s) 312, 455, 458, 461, 532
ApoI RAATTY 1 cut(s) 862
AspS9I GGNCC 5 cut(s) 16, 104, 139, 381, 741
AsuHPI GGTGA 3 cut(s) 589, 629, 670
AvaII GGWCC 3 cut(s) 139, 381, 741
BanII GRGCYC 3 cut(s) 338, 669, 683
BbrPI CACGTG 1 cut(s) 571
BbsI GAAGAC 1 cut(s) 243
Bbv12I GWGCWC 4 cut(s) 338, 415, 669, 683
BbvI GCAGC 5 cut(s) 324, 448, 467, 470, 519
BccI CCATC 2 cut(s) 742, 995
BceAI ACGGC 1 cut(s) 118
BciT130I CCWGG 2 cut(s) 501, 641
BclI TGATCA 1 cut(s) 579
BcoDI GTCTC 6 cut(s) 285, 476, 481, 501, 548, 890
BfaI CTAG 2 cut(s) 447, 915
BfmI CTRYAG 1 cut(s) 943
BisI GCNGC 6 cut(s) 15, 313, 456, 459, 462, 533
BlpI GCTNAGC 1 cut(s) 451
BlsI GCNGC 6 cut(s) 16, 314, 457, 460, 463, 534
Bme1390I CCNGG 2 cut(s) 501, 641
Bme18I GGWCC 3 cut(s) 139, 381, 741
BmeRI GACNNNNNGTC 1 cut(s) 526
BmgT120I GGNCC 5 cut(s) 16, 104, 139, 381, 741
BmiI GGNNCC 5 cut(s) 18, 106, 140, 141, 920
BmrFI CCNGG 2 cut(s) 501, 641
BmrI ACTGGG 1 cut(s) 1110
BmsI GCATC 2 cut(s) 324, 549
BmuI ACTGGG 1 cut(s) 1110
BpiI GAAGAC 1 cut(s) 243
BplI GAGNNNNNCTC 2 cut(s) 665, 697
Bpu10I CCTNAGC 1 cut(s) 332
Bpu1102I GCTNAGC 1 cut(s) 451
Bsa29I ATCGAT 1 cut(s) 833
BsaAI YACGTR 1 cut(s) 571
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 5 cut(s) 100, 377, 499, 537, 563
BsaXI ACNNNNNCTCC 2 cut(s) 405, 435
Bsc4I CCNNNNNNNGG 7 cut(s) 25, 26, 651, 690, 931, 1012, 1187
Bse118I RCCGGY 2 cut(s) 622, 644
Bse1I ACTGG 1 cut(s) 1105
BseBI CCWGG 2 cut(s) 501, 641
BseCI ATCGAT 1 cut(s) 833
BseDI CCNNGG 5 cut(s) 100, 377, 499, 537, 563
BseGI GGATG 1 cut(s) 415
BseLI CCNNNNNNNGG 7 cut(s) 25, 26, 651, 690, 931, 1012, 1187
BseMII CTCAG 4 cut(s) 323, 415, 465, 1188
BseNI ACTGG 1 cut(s) 1105
BseRI GAGGAG 4 cut(s) 303, 539, 908, 1220
BseXI GCAGC 5 cut(s) 324, 448, 467, 470, 519
BseYI CCCAGC 1 cut(s) 626
Bsh1236I CGCG 2 cut(s) 539, 890
Bsh1285I CGRYCG 1 cut(s) 656
BshFI GGCC 7 cut(s) 17, 105, 226, 644, 1005, 1145, 1180
BshVI ATCGAT 1 cut(s) 833
BsiEI CGRYCG 1 cut(s) 656
BsiHKAI GWGCWC 4 cut(s) 338, 415, 669, 683
BsiSI CCGG 4 cut(s) 467, 547, 623, 645
BsiWI CGTACG 1 cut(s) 233
BslFI GGGAC 2 cut(s) 125, 830
BslI CCNNNNNNNGG 7 cut(s) 25, 26, 651, 690, 931, 1012, 1187
BsmAI GTCTC 6 cut(s) 285, 476, 481, 501, 548, 890
BsmBI CGTCTC 2 cut(s) 285, 476
BsmFI GGGAC 2 cut(s) 125, 830
BsnI GGCC 7 cut(s) 17, 105, 226, 644, 1005, 1145, 1180
Bso31I GGTCTC 1 cut(s) 548
Bsp1286I GDGCHC 4 cut(s) 338, 415, 669, 683
Bsp143I GATC 3 cut(s) 579, 834, 1084
Bsp1720I GCTNAGC 1 cut(s) 451
BspANI GGCC 7 cut(s) 17, 105, 226, 644, 1005, 1145, 1180
BspCNI CTCAG 4 cut(s) 324, 414, 464, 1189
BspDI ATCGAT 1 cut(s) 833
BspFNI CGCG 2 cut(s) 539, 890
BspLI GGNNCC 5 cut(s) 18, 106, 140, 141, 920
BspTNI GGTCTC 1 cut(s) 548
BsrBI CCGCTC 1 cut(s) 390
BsrFI RCCGGY 2 cut(s) 622, 644
BsrI ACTGG 1 cut(s) 1105
BssAI RCCGGY 2 cut(s) 622, 644
BssECI CCNNGG 5 cut(s) 100, 377, 499, 537, 563
BssMI GATC 3 cut(s) 579, 834, 1084
Bst2UI CCWGG 2 cut(s) 501, 641
Bst6I CTCTTC 2 cut(s) 447, 474
BstAPI GCANNNNNTGC 1 cut(s) 461
BstBAI YACGTR 1 cut(s) 571
BstC8I GCNNGC 4 cut(s) 537, 624, 969, 973
BstDEI CTNAG 4 cut(s) 332, 401, 451, 1197
BstDSI CCRYGG 2 cut(s) 100, 537
BstEII GGTNACC 1 cut(s) 635
BstENI CCTNNNNNAGG 1 cut(s) 1010
BstF5I GGATG 1 cut(s) 415
BstFNI CGCG 2 cut(s) 539, 890
BstKTI GATC 3 cut(s) 582, 837, 1087
BstMAI GTCTC 6 cut(s) 285, 476, 481, 501, 548, 890
BstMBI GATC 3 cut(s) 579, 834, 1084
BstMCI CGRYCG 1 cut(s) 656
BstMWI GCNNNNNNNGC 3 cut(s) 223, 461, 467
BstNI CCWGG 2 cut(s) 501, 641
BstNSI RCATGY 1 cut(s) 975
BstPI GGTNACC 1 cut(s) 635
BstSCI CCNGG 2 cut(s) 499, 639
BstSFI CTRYAG 1 cut(s) 943
BstUI CGCG 2 cut(s) 539, 890
BstV1I GCAGC 5 cut(s) 324, 448, 467, 470, 519
BstV2I GAAGAC 1 cut(s) 243
Bsu15I ATCGAT 1 cut(s) 833
BsuRI GGCC 7 cut(s) 17, 105, 226, 644, 1005, 1145, 1180
BsuTUI ATCGAT 1 cut(s) 833
BtgI CCRYGG 2 cut(s) 100, 537
BtsCI GGATG 1 cut(s) 415
BtsI GCAGTG 1 cut(s) 942
BtsIMutI CAGTG 2 cut(s) 705, 942
Cac8I GCNNGC 4 cut(s) 537, 624, 969, 973
CaiI CAGNNNCTG 1 cut(s) 461
Cfr10I RCCGGY 2 cut(s) 622, 644
Cfr13I GGNCC 5 cut(s) 16, 104, 139, 381, 741
Cfr42I CCGCGG 1 cut(s) 540
ClaI ATCGAT 1 cut(s) 833
CseI GACGC 2 cut(s) 308, 896
Csp6I GTAC 5 cut(s) 47, 161, 234, 650, 1065
CviAII CATG 3 cut(s) 319, 583, 972
CviQI GTAC 5 cut(s) 47, 161, 234, 650, 1065
DdeI CTNAG 4 cut(s) 332, 401, 451, 1197
DpnI GATC 3 cut(s) 581, 836, 1086
DpnII GATC 3 cut(s) 579, 834, 1084
DrdI GACNNNNNNGTC 1 cut(s) 305
DriI GACNNNNNGTC 1 cut(s) 526
DseDI GACNNNNNNGTC 1 cut(s) 305
Eam1104I CTCTTC 2 cut(s) 447, 474
Eam1105I GACNNNNNGTC 1 cut(s) 526
EarI CTCTTC 2 cut(s) 447, 474
EciI GGCGGA 1 cut(s) 519
Ecl136II GAGCTC 3 cut(s) 336, 667, 681
Eco24I GRGCYC 3 cut(s) 338, 669, 683
Eco31I GGTCTC 1 cut(s) 548
Eco32I GATATC 1 cut(s) 1024
Eco47I GGWCC 3 cut(s) 139, 381, 741
Eco53kI GAGCTC 3 cut(s) 336, 667, 681
Eco72I CACGTG 1 cut(s) 571
Eco91I GGTNACC 1 cut(s) 635
EcoICRI GAGCTC 3 cut(s) 336, 667, 681
EcoNI CCTNNNNNAGG 1 cut(s) 1010
EcoO109I RGGNCCY 2 cut(s) 139, 381
EcoO65I GGTNACC 1 cut(s) 635
EcoRII CCWGG 2 cut(s) 499, 639
EcoRV GATATC 1 cut(s) 1024
EcoT38I GRGCYC 3 cut(s) 338, 669, 683
Esp3I CGTCTC 2 cut(s) 285, 476
FaeI CATG 3 cut(s) 322, 586, 975
FalI AAGNNNNNCTT 2 cut(s) 990, 1022
FaqI GGGAC 2 cut(s) 125, 830
FatI CATG 3 cut(s) 318, 582, 971
FauI CCCGC 4 cut(s) 395, 522, 532, 544
FbaI TGATCA 1 cut(s) 579
Fnu4HI GCNGC 6 cut(s) 15, 313, 456, 459, 462, 533
FokI GGATG 1 cut(s) 402
FriOI GRGCYC 3 cut(s) 338, 669, 683
Fsp4HI GCNGC 6 cut(s) 15, 313, 456, 459, 462, 533
FspBI CTAG 2 cut(s) 447, 915
GluI GCNGC 6 cut(s) 15, 313, 456, 459, 462, 533
GsaI CCCAGC 1 cut(s) 630
HaeIII GGCC 7 cut(s) 17, 105, 226, 644, 1005, 1145, 1180
HapII CCGG 4 cut(s) 467, 547, 623, 645
HgaI GACGC 2 cut(s) 308, 896
Hin1II CATG 3 cut(s) 322, 586, 975
HinfI GANTC 5 cut(s) 405, 527, 736, 845, 1116
HpaII CCGG 4 cut(s) 467, 547, 623, 645
HphI GGTGA 3 cut(s) 589, 629, 670
Hpy166II GTNNAC 3 cut(s) 61, 650, 1018
Hpy188I TCNGA 6 cut(s) 94, 245, 404, 410, 827, 842
Hpy188III TCNNGA 4 cut(s) 185, 352, 778, 1189
Hpy8I GTNNAC 3 cut(s) 61, 650, 1018
Hpy99I CGWCG 3 cut(s) 299, 302, 962
HpyAV CCTTC 1 cut(s) 379
HpyCH4IV ACGT 4 cut(s) 273, 570, 594, 960
HpyCH4V TGCA 2 cut(s) 967, 975
HpyF10VI GCNNNNNNNGC 3 cut(s) 223, 461, 467
HpyF3I CTNAG 4 cut(s) 332, 401, 451, 1197
HpySE526I ACGT 4 cut(s) 273, 570, 594, 960
Hsp92II CATG 3 cut(s) 322, 586, 975
KflI GGGWCCC 1 cut(s) 139
KroI GCCGGC 1 cut(s) 622
KroNI GCCGGC 1 cut(s) 624
Ksp22I TGATCA 1 cut(s) 579
KspI CCGCGG 1 cut(s) 540
Kzo9I GATC 3 cut(s) 579, 834, 1084
LmnI GCTCC 5 cut(s) 395, 469, 686, 861, 924
Lsp1109I GCAGC 5 cut(s) 324, 448, 467, 470, 519
LweI GCATC 2 cut(s) 324, 549
MaeI CTAG 2 cut(s) 447, 915
MaeII ACGT 4 cut(s) 273, 570, 594, 960
MaeIII GTNAC 5 cut(s) 34, 590, 635, 884, 1241
MalI GATC 3 cut(s) 581, 836, 1086
MbiI CCGCTC 1 cut(s) 390
MboI GATC 3 cut(s) 579, 834, 1084
MboII GAAGA 5 cut(s) 243, 434, 491, 793, 1079
MhlI GDGCHC 4 cut(s) 338, 415, 669, 683
MluCI AATT 7 cut(s) 109, 198, 207, 220, 730, 805, 862
MlyI GAGTC 2 cut(s) 536, 1125
MmeI TCCRAC 2 cut(s) 279, 736
MroNI GCCGGC 1 cut(s) 622
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 1 cut(s) 674
MspA1I CMGCKG 5 cut(s) 461, 517, 539, 948, 1228
MspI CCGG 4 cut(s) 467, 547, 623, 645
MspR9I CCNGG 2 cut(s) 501, 641
MvaI CCWGG 2 cut(s) 501, 641
MvnI CGCG 2 cut(s) 539, 890
MwoI GCNNNNNNNGC 3 cut(s) 223, 461, 467
NaeI GCCGGC 1 cut(s) 624
NdeII GATC 3 cut(s) 579, 834, 1084
NgoMIV GCCGGC 1 cut(s) 622
NlaIII CATG 3 cut(s) 322, 586, 975
NlaIV GGNNCC 5 cut(s) 18, 106, 140, 141, 920
NmeAIII GCCGAG 1 cut(s) 588
NmuCI GTSAC 2 cut(s) 635, 884
NspI RCATGY 1 cut(s) 975
PaeI GCATGC 1 cut(s) 975
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PdiI GCCGGC 1 cut(s) 624
PfeI GAWTC 3 cut(s) 405, 736, 845
Pfl23II CGTACG 1 cut(s) 233
PflFI GACNNNGTC 1 cut(s) 821
PkrI GCNGC 6 cut(s) 16, 314, 457, 460, 463, 534
PleI GAGTC 2 cut(s) 535, 1124
PmaCI CACGTG 1 cut(s) 571
PmlI CACGTG 1 cut(s) 571
PpsI GAGTC 2 cut(s) 535, 1124
Ppu21I YACGTR 1 cut(s) 571
PpuMI RGGWCCY 2 cut(s) 139, 381
Psp124BI GAGCTC 3 cut(s) 338, 669, 683
Psp1406I AACGTT 1 cut(s) 273
Psp5II RGGWCCY 2 cut(s) 139, 381
Psp6I CCWGG 2 cut(s) 499, 639
PspCI CACGTG 1 cut(s) 571
PspEI GGTNACC 1 cut(s) 635
PspFI CCCAGC 1 cut(s) 626
PspGI CCWGG 2 cut(s) 499, 639
PspLI CGTACG 1 cut(s) 233
PspN4I GGNNCC 5 cut(s) 18, 106, 140, 141, 920
PspPI GGNCC 5 cut(s) 16, 104, 139, 381, 741
PspPPI RGGWCCY 2 cut(s) 139, 381
PstNI CAGNNNCTG 1 cut(s) 461
PsyI GACNNNGTC 1 cut(s) 821
PvuII CAGCTG 1 cut(s) 461
RsaI GTAC 5 cut(s) 48, 162, 235, 651, 1066
RsaNI GTAC 5 cut(s) 47, 161, 234, 650, 1065
RseI CAYNNNNRTG 1 cut(s) 674
SacI GAGCTC 3 cut(s) 338, 669, 683
SacII CCGCGG 1 cut(s) 540
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 6 cut(s) 15, 313, 456, 459, 462, 533
Sau3AI GATC 3 cut(s) 579, 834, 1084
Sau96I GGNCC 5 cut(s) 16, 104, 139, 381, 741
SchI GAGTC 2 cut(s) 536, 1125
ScrFI CCNGG 2 cut(s) 501, 641
SduI GDGCHC 4 cut(s) 338, 415, 669, 683
SfaNI GCATC 2 cut(s) 324, 549
SfcI CTRYAG 1 cut(s) 943
Sfr303I CCGCGG 1 cut(s) 540
SgrBI CCGCGG 1 cut(s) 540
SinI GGWCC 3 cut(s) 139, 381, 741
SmiMI CAYNNNNRTG 1 cut(s) 674
SphI GCATGC 1 cut(s) 975
Sse9I AATT 7 cut(s) 109, 198, 207, 220, 730, 805, 862
SspI AATATT 1 cut(s) 153
SspMI CTAG 2 cut(s) 447, 915
SstI GAGCTC 3 cut(s) 338, 669, 683
StyD4I CCNGG 2 cut(s) 499, 639
TaiI ACGT 4 cut(s) 276, 573, 597, 963
TaqI TCGA 7 cut(s) 351, 777, 801, 833, 1041, 1053, 1114
TaqII GACCGA 1 cut(s) 729
TasI AATT 7 cut(s) 109, 198, 207, 220, 730, 805, 862
TatI WGTACW 2 cut(s) 46, 160
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 3 cut(s) 405, 736, 845
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 2 cut(s) 712, 942
TseFI GTSAC 2 cut(s) 635, 884
TseI GCWGC 5 cut(s) 312, 455, 458, 461, 532
Tsp45I GTSAC 2 cut(s) 635, 884
TspDTI ATGAA 3 cut(s) 105, 837, 1044
TspGWI ACGGA 1 cut(s) 300
TspRI CASTG 2 cut(s) 712, 942
Tth111I GACNNNGTC 1 cut(s) 821
VpaK11BI GGWCC 3 cut(s) 139, 381, 741
XagI CCTNNNNNAGG 1 cut(s) 1010
XapI RAATTY 1 cut(s) 862
XceI RCATGY 1 cut(s) 975
XspI CTAG 2 cut(s) 447, 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.