FvH4_3g38480

Belongs to the UPP synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014104
Physical Location & Seq
Reverse (-)
32853315 .. 32855162
1848 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38480.t1

Sequence Viewer

Length: 906 bp
ATGCTATCCCTCCGCTGGTTCCCTATCCCAGTCCAGCTCAGCTCTCAGTCCAGCTCAATCCATCCCAAACCCCAATTGCGTGTCTCCAGCTCACTCCACAACGCTGCCGCAACCGCGCTGAGGCAGGAGGTCAAAGAGTGTTTAAATGACGGATTTGCCCCTGGTGAAGAGGCGTTGCCGGCGGGTCTGCGGCGGGAGGCGATGCCGAGGCACGTGGCGGTGATCATGGACGGGAACGTGAGGTGGGCCAGGCGGAGAGGGCTGCCGTCCGGGGCGGGTCACCAGGCGGGTGCCCGGGCGCTGAGGGAGCTCGTTGACTTGAGCCGGAAATGGGGGATTAGGGTTCTCACTGTCTTTGCTTTTTCGTATGATAACTGGGTTCGCCCAAAGATGGAGGTTGAATTTTTGATGAGTTTGTTTGAGGGGGTGATCAAGTCAGAGATCAACAATCTTGCCAGGGAAGGCATTCGAATATCAGTCATTGGGGATTCGTCAAAGCTCCCAGATTCTTTACAGAAACTGATAAGTGATGCACAGGAGAAAACGAAAGACAACTTCAGACTCCAACTTATTGTGGCAGTGAGCTACAGTGGGAAATACGATGTAGTGCAAGCATGCAAAAGCATCTCTCAGAAGGTAAAAGACGGCCTCATTCAAGTTGAAGATATCGATGAAAGCGTCATCGAGCAGGAACTGGAGACTAAGTGTACCGAGCTTCCTTACCCTGATCTACTCATCCGAACCAGCGGTGAGCTCAGAGTCAGTAACTTCTTGTTGTGGCAGTTGGCCTACACTGAACTTTTCTTCGTACCAGCTCTTTGGCCTGATTTTGGGAAGGCCGAGTTTGCGGAGGCGTTGATATCATTTCAGCAAAGGCTGAGACGTTATGGTAGACGAGATTTATAG

Protein Analysis

302

Amino Acids

34.04

Weight (kDa)

8.7

Isoelectric Point (pI)

60.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prenyltransf PF01255 75 - 297 3.4e-79 Putative undecaprenyl diphosphate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014104)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58770
fragaria_vesca FvH4_3g38480
malus_domestica MD03G1071400.v1.1 MD03G1071500.v1.1
prunus_persica Prupe.6G058100_v2.0.a1 Prupe.6G058100_v2.0.a1 Prupe.6G058100_v2.0.a1
pyrus_communis pycom03g05760 pycom03g05770
rosa_chinensis RchiOBHm_Chr5g0069331
rosa_laevigata RLG00000036047
rosa_multiflora Rmu_sc0002658.1_g000003
rosa_roxburghii Rroxscaffold_1G00011570
rosa_rugosa Rorug05G0397000
rosa_samantha Rh5BG472800 Rh5CG495400 Rh5DG485200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 290
AccI GTMKAC 1 cut(s) 892
AccII CGCG 1 cut(s) 116
AcsI RAATTY 1 cut(s) 401
AcuI CTGAAG 1 cut(s) 541
AcvI CACGTG 1 cut(s) 214
AfaI GTAC 2 cut(s) 709, 810
AfiI CCNNNNNNNGG 5 cut(s) 15, 120, 331, 391, 830
AgsI TTSAA 3 cut(s) 401, 656, 662
AjnI CCWGG 4 cut(s) 160, 248, 282, 455
Alw21I GWGCWC 2 cut(s) 312, 756
Alw26I GTCTC 3 cut(s) 88, 692, 874
AlwNI CAGNNNCTG 2 cut(s) 520, 694
Ama87I CYCGRG 1 cut(s) 294
AoxI GGCC 5 cut(s) 246, 646, 786, 821, 837
ApeKI GCWGC 2 cut(s) 104, 262
ApoI RAATTY 1 cut(s) 401
Asp700I GAANNNNTTC 1 cut(s) 465
AspLEI GCGC 2 cut(s) 118, 301
AspS9I GGNCC 1 cut(s) 246
AsuC2I CCSGG 3 cut(s) 271, 295, 296
AsuHPI GGTGA 5 cut(s) 176, 232, 272, 439, 761
AsuII TTCGAA 1 cut(s) 469
AvaI CYCGRG 1 cut(s) 294
BaeGI GKGCMC 1 cut(s) 295
BanI GGYRCC 1 cut(s) 290
BanII GRGCYC 2 cut(s) 312, 756
BbrPI CACGTG 1 cut(s) 214
Bbv12I GWGCWC 2 cut(s) 312, 756
BbvCI CCTCAGC 2 cut(s) 119, 302
BbvI GCAGC 2 cut(s) 91, 249
BccI CCATC 2 cut(s) 69, 385
BceAI ACGGC 2 cut(s) 250, 661
BciT130I CCWGG 4 cut(s) 162, 250, 284, 457
BclI TGATCA 2 cut(s) 222, 429
BcnI CCSGG 3 cut(s) 271, 295, 296
BcoDI GTCTC 3 cut(s) 88, 692, 874
BfmI CTRYAG 1 cut(s) 586
BfoI RGCGCY 1 cut(s) 302
BisI GCNGC 4 cut(s) 105, 108, 191, 263
BlpI GCTNAGC 1 cut(s) 38
BlsI GCNGC 4 cut(s) 106, 109, 192, 264
Bme1390I CCNGG 7 cut(s) 162, 250, 271, 284, 295, 296, 457
BmeT110I CYCGRG 1 cut(s) 294
BmgT120I GGNCC 1 cut(s) 246
BmiI GGNNCC 2 cut(s) 20, 292
BmrFI CCNGG 7 cut(s) 162, 250, 271, 284, 295, 296, 457
BmrI ACTGGG 2 cut(s) 23, 385
BmsI GCATC 3 cut(s) 192, 520, 633
BmuI ACTGGG 2 cut(s) 23, 385
BpmI CTGGAG 2 cut(s) 70, 716
Bpu10I CCTNAGC 2 cut(s) 119, 302
Bpu1102I GCTNAGC 1 cut(s) 38
Bpu14I TTCGAA 1 cut(s) 469
BpuEI CTTGAG 1 cut(s) 340
BpuMI CCSGG 3 cut(s) 271, 295, 296
Bsa29I ATCGAT 1 cut(s) 669
BsaAI YACGTR 1 cut(s) 214
BsaJI CCNNGG 5 cut(s) 160, 206, 270, 294, 456
BsaXI ACNNNNNCTCC 2 cut(s) 689, 719
Bsc4I CCNNNNNNNGG 5 cut(s) 15, 120, 331, 391, 830
Bse118I RCCGGY 1 cut(s) 178
Bse1I ACTGG 3 cut(s) 29, 380, 699
BseBI CCWGG 4 cut(s) 162, 250, 284, 457
BseCI ATCGAT 1 cut(s) 669
BseDI CCNNGG 5 cut(s) 160, 206, 270, 294, 456
BseGI GGATG 2 cut(s) 61, 735
BseLI CCNNNNNNNGG 5 cut(s) 15, 120, 331, 391, 830
BseMII CTCAG 7 cut(s) 52, 59, 110, 293, 644, 769, 869
BseNI ACTGG 3 cut(s) 29, 380, 699
BseSI GKGCMC 1 cut(s) 295
BseXI GCAGC 2 cut(s) 91, 249
Bsh1236I CGCG 1 cut(s) 116
BshFI GGCC 5 cut(s) 248, 648, 788, 823, 839
BshNI GGYRCC 1 cut(s) 290
BshVI ATCGAT 1 cut(s) 669
BsiHKAI GWGCWC 2 cut(s) 312, 756
BsiHKCI CYCGRG 1 cut(s) 294
BsiSI CCGG 4 cut(s) 179, 270, 295, 325
BslI CCNNNNNNNGG 5 cut(s) 15, 120, 331, 391, 830
BsmAI GTCTC 3 cut(s) 88, 692, 874
BsmBI CGTCTC 1 cut(s) 874
BsmI GAATGC 1 cut(s) 465
BsnI GGCC 5 cut(s) 248, 648, 788, 823, 839
BsoBI CYCGRG 1 cut(s) 294
Bsp119I TTCGAA 1 cut(s) 469
Bsp1286I GDGCHC 3 cut(s) 295, 312, 756
Bsp143I GATC 4 cut(s) 222, 429, 441, 727
Bsp1720I GCTNAGC 1 cut(s) 38
BspANI GGCC 5 cut(s) 248, 648, 788, 823, 839
BspCNI CTCAG 7 cut(s) 51, 58, 111, 294, 643, 768, 870
BspDI ATCGAT 1 cut(s) 669
BspFNI CGCG 1 cut(s) 116
BspLI GGNNCC 2 cut(s) 20, 292
BspT104I TTCGAA 1 cut(s) 469
BspT107I GGYRCC 1 cut(s) 290
BsrFI RCCGGY 1 cut(s) 178
BsrI ACTGG 3 cut(s) 29, 380, 699
BssAI RCCGGY 1 cut(s) 178
BssECI CCNNGG 5 cut(s) 160, 206, 270, 294, 456
BssMI GATC 4 cut(s) 222, 429, 441, 727
Bst2UI CCWGG 4 cut(s) 162, 250, 284, 457
Bst4CI ACNGT 2 cut(s) 352, 590
Bst6I CTCTTC 1 cut(s) 162
BstBAI YACGTR 1 cut(s) 214
BstBI TTCGAA 1 cut(s) 469
BstC8I GCNNGC 3 cut(s) 180, 612, 616
BstDEI CTNAG 8 cut(s) 38, 45, 119, 302, 630, 702, 755, 878
BstEII GGTNACC 1 cut(s) 278
BstF5I GGATG 2 cut(s) 61, 735
BstFNI CGCG 1 cut(s) 116
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 2 cut(s) 118, 301
BstKTI GATC 4 cut(s) 225, 432, 444, 730
BstMAI GTCTC 3 cut(s) 88, 692, 874
BstMBI GATC 4 cut(s) 222, 429, 441, 727
BstMWI GCNNNNNNNGC 5 cut(s) 113, 179, 259, 307, 845
BstNI CCWGG 4 cut(s) 162, 250, 284, 457
BstNSI RCATGY 1 cut(s) 618
BstPI GGTNACC 1 cut(s) 278
BstSCI CCNGG 7 cut(s) 160, 248, 269, 282, 293, 294, 455
BstSFI CTRYAG 1 cut(s) 586
BstSLI GKGCMC 1 cut(s) 295
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 2 cut(s) 91, 249
BstXI CCANNNNNNTGG 1 cut(s) 819
Bsu15I ATCGAT 1 cut(s) 669
BsuRI GGCC 5 cut(s) 248, 648, 788, 823, 839
BsuTUI ATCGAT 1 cut(s) 669
BtgZI GCGATG 1 cut(s) 215
BtsCI GGATG 2 cut(s) 61, 735
BtsI GCAGTG 1 cut(s) 585
BtsIMutI CAGTG 4 cut(s) 348, 585, 595, 792
Cac8I GCNNGC 3 cut(s) 180, 612, 616
CaiI CAGNNNCTG 2 cut(s) 520, 694
CfoI GCGC 2 cut(s) 118, 301
Cfr10I RCCGGY 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 246
Cfr9I CCCGGG 1 cut(s) 294
ClaI ATCGAT 1 cut(s) 669
CseI GACGC 1 cut(s) 667
Csp6I GTAC 2 cut(s) 708, 809
CviAII CATG 2 cut(s) 226, 615
CviQI GTAC 2 cut(s) 708, 809
DdeI CTNAG 8 cut(s) 38, 45, 119, 302, 630, 702, 755, 878
DpnI GATC 4 cut(s) 224, 431, 443, 729
DpnII GATC 4 cut(s) 222, 429, 441, 727
DraI TTTAAA 1 cut(s) 144
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
EciI GGCGGA 1 cut(s) 268
Ecl136II GAGCTC 2 cut(s) 310, 754
Eco24I GRGCYC 2 cut(s) 312, 756
Eco32I GATATC 2 cut(s) 667, 861
Eco53kI GAGCTC 2 cut(s) 310, 754
Eco57I CTGAAG 1 cut(s) 541
Eco72I CACGTG 1 cut(s) 214
Eco88I CYCGRG 1 cut(s) 294
Eco91I GGTNACC 1 cut(s) 278
EcoICRI GAGCTC 2 cut(s) 310, 754
EcoO65I GGTNACC 1 cut(s) 278
EcoRII CCWGG 4 cut(s) 160, 248, 282, 455
EcoRV GATATC 2 cut(s) 667, 861
EcoT38I GRGCYC 2 cut(s) 312, 756
Esp3I CGTCTC 1 cut(s) 874
FaeI CATG 2 cut(s) 229, 618
FaiI YATR 5 cut(s) 227, 369, 616, 888, 904
FatI CATG 2 cut(s) 225, 614
FauI CCCGC 4 cut(s) 175, 186, 268, 280
FbaI TGATCA 2 cut(s) 222, 429
FblI GTMKAC 1 cut(s) 892
Fnu4HI GCNGC 4 cut(s) 105, 108, 191, 263
FokI GGATG 2 cut(s) 48, 722
FriOI GRGCYC 2 cut(s) 312, 756
Fsp4HI GCNGC 4 cut(s) 105, 108, 191, 263
GlaI GCGC 2 cut(s) 117, 300
GluI GCNGC 4 cut(s) 105, 108, 191, 263
GsuI CTGGAG 2 cut(s) 70, 716
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 5 cut(s) 248, 648, 788, 823, 839
HapII CCGG 4 cut(s) 179, 270, 295, 325
HgaI GACGC 1 cut(s) 667
HhaI GCGC 2 cut(s) 118, 301
Hin1II CATG 2 cut(s) 229, 618
Hin6I GCGC 2 cut(s) 116, 299
HinP1I GCGC 2 cut(s) 116, 299
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 4 cut(s) 488, 506, 561, 759
HpaII CCGG 4 cut(s) 179, 270, 295, 325
HphI GGTGA 5 cut(s) 176, 232, 272, 439, 761
Hpy166II GTNNAC 3 cut(s) 316, 708, 893
Hpy188I TCNGA 5 cut(s) 439, 560, 633, 740, 758
Hpy8I GTNNAC 3 cut(s) 316, 708, 893
HpyAV CCTTC 3 cut(s) 455, 628, 829
HpyCH4III ACNGT 2 cut(s) 352, 590
HpyCH4IV ACGT 3 cut(s) 213, 237, 883
HpyCH4V TGCA 3 cut(s) 533, 610, 618
HpyF10VI GCNNNNNNNGC 5 cut(s) 113, 179, 259, 307, 845
HpyF3I CTNAG 8 cut(s) 38, 45, 119, 302, 630, 702, 755, 878
HpySE526I ACGT 3 cut(s) 213, 237, 883
Hsp92II CATG 2 cut(s) 229, 618
HspAI GCGC 2 cut(s) 116, 299
KroI GCCGGC 1 cut(s) 178
KroNI GCCGGC 1 cut(s) 180
Ksp22I TGATCA 2 cut(s) 222, 429
Kzo9I GATC 4 cut(s) 222, 429, 441, 727
LmnI GCTCC 2 cut(s) 307, 504
Lsp1109I GCAGC 2 cut(s) 91, 249
LweI GCATC 3 cut(s) 192, 520, 633
MaeII ACGT 3 cut(s) 213, 237, 883
MaeIII GTNAC 2 cut(s) 278, 764
MalI GATC 4 cut(s) 224, 431, 443, 729
MboI GATC 4 cut(s) 222, 429, 441, 727
MboII GAAGA 3 cut(s) 179, 674, 796
MfeI CAATTG 1 cut(s) 74
MhlI GDGCHC 3 cut(s) 295, 312, 756
MluCI AATT 2 cut(s) 74, 401
MlyI GAGTC 2 cut(s) 555, 768
MmeI TCCRAC 1 cut(s) 589
MroNI GCCGGC 1 cut(s) 178
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 1 cut(s) 143
MspA1I CMGCKG 2 cut(s) 15, 747
MspI CCGG 4 cut(s) 179, 270, 295, 325
MspR9I CCNGG 7 cut(s) 162, 250, 271, 284, 295, 296, 457
MunI CAATTG 1 cut(s) 74
Mva1269I GAATGC 1 cut(s) 465
MvaI CCWGG 4 cut(s) 162, 250, 284, 457
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 5 cut(s) 113, 179, 259, 307, 845
NaeI GCCGGC 1 cut(s) 180
NciI CCSGG 3 cut(s) 271, 295, 296
NdeII GATC 4 cut(s) 222, 429, 441, 727
NgoMIV GCCGGC 1 cut(s) 178
NlaIII CATG 2 cut(s) 229, 618
NlaIV GGNNCC 2 cut(s) 20, 292
NmeAIII GCCGAG 2 cut(s) 231, 865
NmuCI GTSAC 1 cut(s) 278
NspI RCATGY 1 cut(s) 618
NspV TTCGAA 1 cut(s) 469
PaeI GCATGC 1 cut(s) 618
PcsI WCGNNNNNNNCGW 1 cut(s) 675
PctI GAATGC 1 cut(s) 465
PdiI GCCGGC 1 cut(s) 180
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 2 cut(s) 488, 506
PkrI GCNGC 4 cut(s) 106, 109, 192, 264
PleI GAGTC 2 cut(s) 555, 767
PmaCI CACGTG 1 cut(s) 214
PmlI CACGTG 1 cut(s) 214
PpsI GAGTC 2 cut(s) 555, 767
Ppu21I YACGTR 1 cut(s) 214
Psp124BI GAGCTC 2 cut(s) 312, 756
Psp6I CCWGG 4 cut(s) 160, 248, 282, 455
PspCI CACGTG 1 cut(s) 214
PspEI GGTNACC 1 cut(s) 278
PspGI CCWGG 4 cut(s) 160, 248, 282, 455
PspN4I GGNNCC 2 cut(s) 20, 292
PspPI GGNCC 1 cut(s) 246
PstNI CAGNNNCTG 2 cut(s) 520, 694
RsaI GTAC 2 cut(s) 709, 810
RsaNI GTAC 2 cut(s) 708, 809
SacI GAGCTC 2 cut(s) 312, 756
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 4 cut(s) 105, 108, 191, 263
Sau3AI GATC 4 cut(s) 222, 429, 441, 727
Sau96I GGNCC 1 cut(s) 246
SchI GAGTC 2 cut(s) 555, 768
ScrFI CCNGG 7 cut(s) 162, 250, 271, 284, 295, 296, 457
SduI GDGCHC 3 cut(s) 295, 312, 756
SfaNI GCATC 3 cut(s) 192, 520, 633
SfcI CTRYAG 1 cut(s) 586
SfuI TTCGAA 1 cut(s) 469
SmaI CCCGGG 1 cut(s) 296
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
SphI GCATGC 1 cut(s) 618
SrfI GCCCGGGC 1 cut(s) 296
Sse9I AATT 2 cut(s) 74, 401
SstI GAGCTC 2 cut(s) 312, 756
StyD4I CCNGG 7 cut(s) 160, 248, 269, 282, 293, 294, 455
TaaI ACNGT 2 cut(s) 352, 590
TaiI ACGT 3 cut(s) 216, 240, 886
TaqI TCGA 3 cut(s) 469, 669, 684
TasI AATT 2 cut(s) 74, 401
TauI GCSGC 2 cut(s) 110, 193
TfiI GAWTC 2 cut(s) 488, 506
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TscAI CASTG 4 cut(s) 355, 585, 595, 799
TseFI GTSAC 1 cut(s) 278
TseI GCWGC 2 cut(s) 104, 262
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 1 cut(s) 687
TspGWI ACGGA 1 cut(s) 165
TspMI CCCGGG 1 cut(s) 294
TspRI CASTG 4 cut(s) 355, 585, 595, 799
XapI RAATTY 1 cut(s) 401
XceI RCATGY 1 cut(s) 618
XmaI CCCGGG 1 cut(s) 294
XmiI GTMKAC 1 cut(s) 892
XmnI GAANNNNTTC 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.