Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0014104

Physical Location & Seq

Genomic Coordinates Forward (+)

4061805 .. 4066158

Gene Structure 4354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G058100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGCTTTCCCTACGCTTCCCTATTTCATTCGAGAACTCTCTGATCACTCCCTTCAAACCCAGACCCTCGCGCTTCCAAACACCCACAGTCCAATCACTTCCACGCCTCTCAAGCTCACTCTCTCTTCCTCGCGCAACCACAGCTGGCGTGGTTCTCAAGGAAGAGGACAGAGAGTTATCAAATAACCGATTTGCCCCTCGCGGAGACTTCCCGCCAGGCGGCGAGCCTTTGCCGGCCGGTCTCCAGCGAGAGCTGATGCCGAGGCACGTGGCGGTGATCATGGACGGTAACGTGAGGTGGGAGAGGCGGAGAGGGTTGCCGGCTGGGTCGGGTCACGAGGCTGGTGCTCGGTCGTTGAGAGAGCTCGTTGAGCTCTGCTGGAAATGGGGGATTAGGGTTCTTACTGTTTTTGCGTTTTCGTATGATAATTGGGTTCGGCCCCAGGTGGAGGTTGATTTTTTGATGAATTTGTTCGAGAAGATGACAAGCTCAGAAATCGACAGTTTTGCAAGGGATGGTATTCGAATTTCGGTCATTGGGGATTTGTCAAAGCTCCCCAACTCTTTACAGAAACTGATAAGTGATGCAGAGGATAGAACGAAAGGCAACTTTAGACTCCACCTGATTGTGGCAGTGAGCTACAGTGGAAAGTACGATATTGTGCAAGCATGTAAAAATATTTCTCAGAAGGTGAAAGATGGCCTTATTCAAGTTGACGATGTCAATGAAAGCTTCATTGAACAAGAACTGGAAACTAACTGTACTGAGTTTCCATACCCTGATCTACTGATAAGAACCAGTGGAGAACTCAGAGTCAGCAACTTCTTGTTGTGGCAGTTGGCCTACACGGAATTTTTCTTCGTATCAGCTCTTTGGCCTGATTTTGGGAAAGCTGAGTTTGTTGAGGCCTTGATTTCCTTTCAGCAGCGGCAGAGGCGTTATGGTGGAAGAGATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002094 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006629 GO:0006720 GO:0006996 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009668 GO:0009987 GO:0016043 GO:0016093 GO:0016094 GO:0016740 GO:0016765 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0061024 GO:0071704 GO:0071840 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

Prenyltransf

Protein Analysis

320

Amino Acids

36.37

Weight (kDa)

6.87

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58770
fragaria_vesca	FvH4_3g38480
malus_domestica	MD03G1071400.v1.1 MD03G1071500.v1.1
prunus_persica	Prupe.6G058100_v2.0.a1 Prupe.6G058100_v2.0.a1 Prupe.6G058100_v2.0.a1
pyrus_communis	pycom03g05760 pycom03g05770
rosa_chinensis	RchiOBHm_Chr5g0069331
rosa_laevigata	RLG00000036047
rosa_multiflora	Rmu_sc0002658.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011570
rosa_rugosa	Rorug05G0397000
rosa_samantha	Rh5BG472800 Rh5CG495400 Rh5DG485200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	958
AccII	CGCG	3 cut(s)	70, 132, 201
AciI	CCGC	6 cut(s)	201, 212, 219, 272, 307, 928
AcoI	YGGCCR	1 cut(s)	234
AcsI	RAATTY	3 cut(s)	466, 525, 851
AcvI	CACGTG	1 cut(s)	268
AfaI	GTAC	2 cut(s)	653, 763
AfiI	CCNNNNNNNGG	4 cut(s)	218, 448, 628, 884
AgsI	TTSAA	3 cut(s)	55, 710, 740
AjnI	CCWGG	2 cut(s)	214, 441
Alw21I	GWGCWC	3 cut(s)	349, 366, 375
Alw26I	GTCTC	2 cut(s)	198, 245
AlwNI	CAGNNNCTG	1 cut(s)	574
AoxI	GGCC	6 cut(s)	234, 437, 700, 840, 875, 906
ApeKI	GCWGC	1 cut(s)	925
ApoI	RAATTY	3 cut(s)	466, 525, 851
Asp700I	GAANNNNTTC	1 cut(s)	470
AspLEI	GCGC	2 cut(s)	72, 134
AspS9I	GGNCC	1 cut(s)	438
AsuHPI	GGTGA	2 cut(s)	286, 703
AsuII	TTCGAA	1 cut(s)	523
BanII	GRGCYC	2 cut(s)	366, 375
BauI	CACGAG	1 cut(s)	335
BbrPI	CACGTG	1 cut(s)	268
Bbv12I	GWGCWC	3 cut(s)	349, 366, 375
BbvI	GCAGC	1 cut(s)	937
BccI	CCATC	2 cut(s)	509, 692
BcgI	CGANNNNNNTGC	4 cut(s)	326, 360, 488, 522
BciT130I	CCWGG	2 cut(s)	216, 443
BclI	TGATCA	2 cut(s)	42, 276
BcoDI	GTCTC	2 cut(s)	198, 245
BfmI	CTRYAG	1 cut(s)	640
BisI	GCNGC	3 cut(s)	220, 926, 929
BlsI	GCNGC	3 cut(s)	221, 927, 930
Bme1390I	CCNGG	2 cut(s)	216, 443
BmgT120I	GGNCC	1 cut(s)	438
BmiI	GGNNCC	1 cut(s)	440
BmrFI	CCNGG	2 cut(s)	216, 443
BmsI	GCATC	2 cut(s)	246, 574
BpmI	CTGGAG	1 cut(s)	227
Bpu14I	TTCGAA	1 cut(s)	523
BpuEI	CTTGAG	2 cut(s)	94, 140
BsaAI	YACGTR	1 cut(s)	268
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	2 cut(s)	260, 441
Bsc4I	CCNNNNNNNGG	4 cut(s)	218, 448, 628, 884
Bse118I	RCCGGY	3 cut(s)	232, 236, 319
Bse1I	ACTGG	2 cut(s)	753, 798
BseBI	CCWGG	2 cut(s)	216, 443
BseDI	CCNNGG	2 cut(s)	260, 441
BseGI	GGATG	1 cut(s)	520
BseLI	CCNNNNNNNGG	4 cut(s)	218, 448, 628, 884
BseMII	CTCAG	5 cut(s)	504, 698, 756, 823, 885
BseNI	ACTGG	2 cut(s)	753, 798
BseX3I	CGGCCG	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	937
BseYI	CCCAGC	1 cut(s)	323
Bsh1236I	CGCG	3 cut(s)	70, 132, 201
Bsh1285I	CGRYCG	2 cut(s)	237, 353
BshFI	GGCC	6 cut(s)	236, 439, 702, 842, 877, 908
BsiEI	CGRYCG	2 cut(s)	237, 353
BsiHKAI	GWGCWC	3 cut(s)	349, 366, 375
BsiSI	CCGG	3 cut(s)	233, 237, 320
BslI	CCNNNNNNNGG	4 cut(s)	218, 448, 628, 884
BsmAI	GTCTC	2 cut(s)	198, 245
BsnI	GGCC	6 cut(s)	236, 439, 702, 842, 877, 908
Bso31I	GGTCTC	1 cut(s)	245
Bsp119I	TTCGAA	1 cut(s)	523
Bsp1286I	GDGCHC	3 cut(s)	349, 366, 375
Bsp143I	GATC	3 cut(s)	42, 276, 781
BspACI	CCGC	6 cut(s)	201, 212, 219, 272, 307, 928
BspANI	GGCC	6 cut(s)	236, 439, 702, 842, 877, 908
BspCNI	CTCAG	5 cut(s)	503, 697, 757, 822, 886
BspFNI	CGCG	3 cut(s)	70, 132, 201
BspLI	GGNNCC	1 cut(s)	440
BspT104I	TTCGAA	1 cut(s)	523
BspTNI	GGTCTC	1 cut(s)	245
BsrFI	RCCGGY	3 cut(s)	232, 236, 319
BsrI	ACTGG	2 cut(s)	753, 798
BssAI	RCCGGY	3 cut(s)	232, 236, 319
BssECI	CCNNGG	2 cut(s)	260, 441
BssMI	GATC	3 cut(s)	42, 276, 781
BssSI	CACGAG	1 cut(s)	335
Bst2BI	CACGAG	1 cut(s)	335
Bst2UI	CCWGG	2 cut(s)	216, 443
Bst4CI	ACNGT	6 cut(s)	88, 287, 406, 503, 644, 761
Bst6I	CTCTTC	3 cut(s)	129, 156, 943
BstBAI	YACGTR	1 cut(s)	268
BstBI	TTCGAA	1 cut(s)	523
BstC8I	GCNNGC	5 cut(s)	145, 224, 234, 321, 666
BstDEI	CTNAG	5 cut(s)	490, 684, 765, 809, 894
BstF5I	GGATG	1 cut(s)	520
BstFNI	CGCG	3 cut(s)	70, 132, 201
BstHHI	GCGC	2 cut(s)	72, 134
BstKTI	GATC	3 cut(s)	45, 279, 784
BstMAI	GTCTC	2 cut(s)	198, 245
BstMBI	GATC	3 cut(s)	42, 276, 781
BstMCI	CGRYCG	2 cut(s)	237, 353
BstMWI	GCNNNNNNNGC	4 cut(s)	111, 140, 370, 934
BstNI	CCWGG	2 cut(s)	216, 443
BstNSI	RCATGY	1 cut(s)	672
BstSCI	CCNGG	2 cut(s)	214, 441
BstSFI	CTRYAG	1 cut(s)	640
BstUI	CGCG	3 cut(s)	70, 132, 201
BstV1I	GCAGC	1 cut(s)	937
BstZI	CGGCCG	1 cut(s)	234
BsuRI	GGCC	6 cut(s)	236, 439, 702, 842, 877, 908
BtsCI	GGATG	1 cut(s)	520
BtsI	GCAGTG	1 cut(s)	639
BtsIMutI	CAGTG	3 cut(s)	639, 649, 805
Cac8I	GCNNGC	5 cut(s)	145, 224, 234, 321, 666
CaiI	CAGNNNCTG	1 cut(s)	574
CfoI	GCGC	2 cut(s)	72, 134
Cfr10I	RCCGGY	3 cut(s)	232, 236, 319
Cfr13I	GGNCC	1 cut(s)	438
Csp6I	GTAC	2 cut(s)	652, 762
CviAII	CATG	2 cut(s)	280, 669
CviQI	GTAC	2 cut(s)	652, 762
DdeI	CTNAG	5 cut(s)	490, 684, 765, 809, 894
DpnI	GATC	3 cut(s)	44, 278, 783
DpnII	GATC	3 cut(s)	42, 276, 781
EaeI	YGGCCR	1 cut(s)	234
EagI	CGGCCG	1 cut(s)	234
Eam1104I	CTCTTC	3 cut(s)	129, 156, 943
EarI	CTCTTC	3 cut(s)	129, 156, 943
EciI	GGCGGA	1 cut(s)	322
Ecl136II	GAGCTC	2 cut(s)	364, 373
EclXI	CGGCCG	1 cut(s)	234
Eco147I	AGGCCT	1 cut(s)	908
Eco24I	GRGCYC	2 cut(s)	366, 375
Eco31I	GGTCTC	1 cut(s)	245
Eco52I	CGGCCG	1 cut(s)	234
Eco53kI	GAGCTC	2 cut(s)	364, 373
Eco72I	CACGTG	1 cut(s)	268
EcoICRI	GAGCTC	2 cut(s)	364, 373
EcoRII	CCWGG	2 cut(s)	214, 441
EcoT38I	GRGCYC	2 cut(s)	366, 375
FaeI	CATG	2 cut(s)	283, 672
FaiI	YATR	6 cut(s)	281, 423, 670, 775, 942, 958
FalI	AAGNNNNNCTT	2 cut(s)	687, 719
FatI	CATG	2 cut(s)	279, 668
FauI	CCCGC	1 cut(s)	219
FbaI	TGATCA	2 cut(s)	42, 276
Fnu4HI	GCNGC	3 cut(s)	220, 926, 929
FokI	GGATG	1 cut(s)	527
FriOI	GRGCYC	2 cut(s)	366, 375
Fsp4HI	GCNGC	3 cut(s)	220, 926, 929
GlaI	GCGC	2 cut(s)	71, 133
GluI	GCNGC	3 cut(s)	220, 926, 929
GsaI	CCCAGC	1 cut(s)	327
GsuI	CTGGAG	1 cut(s)	227
HaeIII	GGCC	6 cut(s)	236, 439, 702, 842, 877, 908
HapII	CCGG	3 cut(s)	233, 237, 320
HhaI	GCGC	2 cut(s)	72, 134
Hin1II	CATG	2 cut(s)	283, 672
Hin6I	GCGC	2 cut(s)	70, 132
HinP1I	GCGC	2 cut(s)	70, 132
HincII	GTYRAC	1 cut(s)	715
HindII	GTYRAC	1 cut(s)	715
HindIII	AAGCTT	1 cut(s)	730
HinfI	GANTC	2 cut(s)	615, 813
HpaII	CCGG	3 cut(s)	233, 237, 320
HphI	GGTGA	2 cut(s)	286, 703
Hpy166II	GTNNAC	1 cut(s)	715
Hpy188I	TCNGA	4 cut(s)	42, 493, 687, 812
Hpy188III	TCNNGA	3 cut(s)	31, 335, 475
Hpy8I	GTNNAC	1 cut(s)	715
HpyAV	CCTTC	2 cut(s)	61, 682
HpyCH4III	ACNGT	6 cut(s)	88, 287, 406, 503, 644, 761
HpyCH4IV	ACGT	2 cut(s)	267, 291
HpyCH4V	TGCA	3 cut(s)	509, 587, 664
HpyF10VI	GCNNNNNNNGC	4 cut(s)	111, 140, 370, 934
HpyF3I	CTNAG	5 cut(s)	490, 684, 765, 809, 894
HpySE526I	ACGT	2 cut(s)	267, 291
Hsp92II	CATG	2 cut(s)	283, 672
HspAI	GCGC	2 cut(s)	70, 132
KroI	GCCGGC	2 cut(s)	232, 319
KroNI	GCCGGC	2 cut(s)	234, 321
Ksp22I	TGATCA	2 cut(s)	42, 276
Kzo9I	GATC	3 cut(s)	42, 276, 781
LmnI	GCTCC	1 cut(s)	558
Lsp1109I	GCAGC	1 cut(s)	937
LweI	GCATC	2 cut(s)	246, 574
MaeII	ACGT	2 cut(s)	267, 291
MaeIII	GTNAC	2 cut(s)	287, 332
MalI	GATC	3 cut(s)	44, 278, 783
MboI	GATC	3 cut(s)	42, 276, 781
MboII	GAAGA	5 cut(s)	116, 173, 490, 850, 960
MhlI	GDGCHC	3 cut(s)	349, 366, 375
MluCI	AATT	4 cut(s)	427, 466, 525, 851
MlyI	GAGTC	2 cut(s)	609, 822
MroNI	GCCGGC	2 cut(s)	232, 319
MroXI	GAANNNNTTC	1 cut(s)	470
MspA1I	CMGCKG	2 cut(s)	143, 928
MspI	CCGG	3 cut(s)	233, 237, 320
MspR9I	CCNGG	2 cut(s)	216, 443
MvaI	CCWGG	2 cut(s)	216, 443
MvnI	CGCG	3 cut(s)	70, 132, 201
MwoI	GCNNNNNNNGC	4 cut(s)	111, 140, 370, 934
NaeI	GCCGGC	2 cut(s)	234, 321
NdeII	GATC	3 cut(s)	42, 276, 781
NgoMIV	GCCGGC	2 cut(s)	232, 319
NlaIII	CATG	2 cut(s)	283, 672
NlaIV	GGNNCC	1 cut(s)	440
NmeAIII	GCCGAG	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	332
NspI	RCATGY	1 cut(s)	672
NspV	TTCGAA	1 cut(s)	523
PceI	AGGCCT	1 cut(s)	908
PdiI	GCCGGC	2 cut(s)	234, 321
PdmI	GAANNNNTTC	1 cut(s)	470
PflFI	GACNNNGTC	1 cut(s)	719
PkrI	GCNGC	3 cut(s)	221, 927, 930
PleI	GAGTC	2 cut(s)	609, 821
PmaCI	CACGTG	1 cut(s)	268
PmlI	CACGTG	1 cut(s)	268
PpsI	GAGTC	2 cut(s)	609, 821
Ppu21I	YACGTR	1 cut(s)	268
PsiI	TTATAA	1 cut(s)	958
Psp124BI	GAGCTC	2 cut(s)	366, 375
Psp6I	CCWGG	2 cut(s)	214, 441
PspCI	CACGTG	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	323
PspGI	CCWGG	2 cut(s)	214, 441
PspN4I	GGNNCC	1 cut(s)	440
PspPI	GGNCC	1 cut(s)	438
PstNI	CAGNNNCTG	1 cut(s)	574
PsyI	GACNNNGTC	1 cut(s)	719
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	2 cut(s)	653, 763
RsaNI	GTAC	2 cut(s)	652, 762
SacI	GAGCTC	2 cut(s)	366, 375
SatI	GCNGC	3 cut(s)	220, 926, 929
Sau3AI	GATC	3 cut(s)	42, 276, 781
Sau96I	GGNCC	1 cut(s)	438
SchI	GAGTC	2 cut(s)	609, 822
ScrFI	CCNGG	2 cut(s)	216, 443
SduI	GDGCHC	3 cut(s)	349, 366, 375
SfaNI	GCATC	2 cut(s)	246, 574
SfcI	CTRYAG	1 cut(s)	640
SfuI	TTCGAA	1 cut(s)	523
SmlI	CTYRAG	2 cut(s)	109, 155
SmoI	CTYRAG	2 cut(s)	109, 155
Sse9I	AATT	4 cut(s)	427, 466, 525, 851
SseBI	AGGCCT	1 cut(s)	908
SsiI	CCGC	6 cut(s)	201, 212, 219, 272, 307, 928
SspI	AATATT	1 cut(s)	679
SstI	GAGCTC	2 cut(s)	366, 375
StuI	AGGCCT	1 cut(s)	908
StyD4I	CCNGG	2 cut(s)	214, 441
TaaI	ACNGT	6 cut(s)	88, 287, 406, 503, 644, 761
TaiI	ACGT	2 cut(s)	270, 294
TaqI	TCGA	4 cut(s)	30, 474, 498, 523
TaqII	GACCGA	2 cut(s)	339, 520
TasI	AATT	4 cut(s)	427, 466, 525, 851
TatI	WGTACW	1 cut(s)	761
TauI	GCSGC	2 cut(s)	222, 931
TscAI	CASTG	3 cut(s)	639, 649, 805
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	1 cut(s)	925
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	4 cut(s)	15, 479, 724, 741
TspGWI	ACGGA	1 cut(s)	863
TspRI	CASTG	3 cut(s)	639, 649, 805
Tth111I	GACNNNGTC	1 cut(s)	719
XapI	RAATTY	3 cut(s)	466, 525, 851
XceI	RCATGY	1 cut(s)	672
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.