Rh5DG485200

Belongs to the UPP synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0014104
Physical Location & Seq
Reverse (-)
76295940 .. 76299857
3918 bp
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UTR
Exon/CDS
Intron
Rh5DG485200.1

Sequence Viewer

Length: 546 bp
ATGCTATCCCTGCGATGGTTCCCTATTCCACTCCAGCTCAGCTCTCACTTCCGCTCAGTCCATTCCAAACCCCAATTGAGTGTCTCCAGCTCACTCCACAACGCTGCCGCAACCGCAACGGATTCGGCCTCGCTCAAGCACGAGGTCAAAGTCGAGGAGTTTCTAAATGACGGATTTGCCCCCGTCCGAGAAGAAGAGGCGTTGCCGGCGGGTCTGCGGCGGGAGGAGATGCCGAGGCACGTGGCAGTGATAATGGACGGGAACGTGAGGTGGGCCAGGCGGAGAGGGCTGCCGTCCTGGTCGGGTCACGAGGCGGGTGCCCGGGCGCTGAGGGAGCTCGTTGACCTCAGCCGGAAATGGGGGATTCGGGTTCTCACTGTCTTCGCGTTTTCGTGTGATAACTGGGTTCGCCCAAAGGTCAGTACTTTAAACCCAAGAAAAGTGCTTTCTAGTTTCTGCTTTTTACAAAAGCACTTTTTTTTTTTTGGTCTGTGTGTGTGTTTTTGTGGAATGACTTGGTTTGGTTATAGTGTAGATGGAGGTTGA

Protein Analysis

181

Amino Acids

20.48

Weight (kDa)

9.54

Isoelectric Point (pI)

53.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prenyltransf PF01255 84 - 140 2e-19 Putative undecaprenyl diphosphate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014104)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58770
fragaria_vesca FvH4_3g38480
malus_domestica MD03G1071400.v1.1 MD03G1071500.v1.1
prunus_persica Prupe.6G058100_v2.0.a1 Prupe.6G058100_v2.0.a1 Prupe.6G058100_v2.0.a1
pyrus_communis pycom03g05760 pycom03g05770
rosa_chinensis RchiOBHm_Chr5g0069331
rosa_laevigata RLG00000036047
rosa_multiflora Rmu_sc0002658.1_g000003
rosa_roxburghii Rroxscaffold_1G00011570
rosa_rugosa Rorug05G0397000
rosa_samantha Rh5BG472800 Rh5CG495400 Rh5DG485200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 317
AccBSI CCGCTC 1 cut(s) 54
AccII CGCG 1 cut(s) 386
AciI CCGC 8 cut(s) 52, 108, 114, 209, 217, 220, 280, 314
AcvI CACGTG 1 cut(s) 241
AfaI GTAC 1 cut(s) 424
AfiI CCNNNNNNNGG 2 cut(s) 15, 358
AjnI CCWGG 2 cut(s) 275, 296
AluBI AGCT 4 cut(s) 37, 42, 90, 337
AluI AGCT 4 cut(s) 37, 42, 90, 337
Alw21I GWGCWC 1 cut(s) 339
Alw26I GTCTC 1 cut(s) 88
Ama87I CYCGRG 1 cut(s) 321
AoxI GGCC 2 cut(s) 126, 273
ApeKI GCWGC 2 cut(s) 104, 289
AspLEI GCGC 1 cut(s) 328
AspS9I GGNCC 1 cut(s) 273
AsuC2I CCSGG 2 cut(s) 322, 323
AvaI CYCGRG 1 cut(s) 321
BaeGI GKGCMC 1 cut(s) 322
BanI GGYRCC 1 cut(s) 317
BanII GRGCYC 1 cut(s) 339
BauI CACGAG 2 cut(s) 140, 308
BbrPI CACGTG 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 373
Bbv12I GWGCWC 1 cut(s) 339
BbvCI CCTCAGC 2 cut(s) 329, 347
BbvI GCAGC 2 cut(s) 91, 276
BccI CCATC 2 cut(s) 9, 530
BceAI ACGGC 1 cut(s) 277
BcgI CGANNNNNNTGC 4 cut(s) 105, 139, 299, 333
BciT130I CCWGG 2 cut(s) 277, 298
BcnI CCSGG 2 cut(s) 322, 323
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 1 cut(s) 450
BfoI RGCGCY 1 cut(s) 329
BisI GCNGC 4 cut(s) 105, 108, 218, 290
BlpI GCTNAGC 1 cut(s) 38
BlsI GCNGC 4 cut(s) 106, 109, 219, 291
BmcAI AGTACT 1 cut(s) 424
Bme1390I CCNGG 4 cut(s) 277, 298, 322, 323
BmeT110I CYCGRG 1 cut(s) 321
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 2 cut(s) 20, 319
BmrFI CCNGG 4 cut(s) 277, 298, 322, 323
BmrI ACTGGG 1 cut(s) 412
BmsI GCATC 1 cut(s) 219
BmuI ACTGGG 1 cut(s) 412
BpiI GAAGAC 1 cut(s) 373
BpmI CTGGAG 2 cut(s) 17, 70
Bpu10I CCTNAGC 2 cut(s) 329, 347
Bpu1102I GCTNAGC 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 119
BpuMI CCSGG 2 cut(s) 322, 323
BsaAI YACGTR 1 cut(s) 241
BsaJI CCNNGG 2 cut(s) 233, 321
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 358
Bse118I RCCGGY 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 407
BseBI CCWGG 2 cut(s) 277, 298
BseDI CCNNGG 2 cut(s) 233, 321
BseLI CCNNNNNNNGG 2 cut(s) 15, 358
BseMII CTCAG 4 cut(s) 52, 69, 320, 361
BseNI ACTGG 1 cut(s) 407
BseRI GAGGAG 2 cut(s) 170, 239
BseSI GKGCMC 1 cut(s) 322
BseXI GCAGC 2 cut(s) 91, 276
Bsh1236I CGCG 1 cut(s) 386
BshFI GGCC 2 cut(s) 128, 275
BshNI GGYRCC 1 cut(s) 317
BsiHKAI GWGCWC 1 cut(s) 339
BsiHKCI CYCGRG 1 cut(s) 321
BsiSI CCGG 3 cut(s) 206, 322, 352
BslI CCNNNNNNNGG 2 cut(s) 15, 358
BsmAI GTCTC 1 cut(s) 88
BsnI GGCC 2 cut(s) 128, 275
BsoBI CYCGRG 1 cut(s) 321
Bsp1286I GDGCHC 2 cut(s) 322, 339
Bsp1720I GCTNAGC 1 cut(s) 38
BspACI CCGC 8 cut(s) 52, 108, 114, 209, 217, 220, 280, 314
BspANI GGCC 2 cut(s) 128, 275
BspCNI CTCAG 4 cut(s) 51, 68, 321, 360
BspFNI CGCG 1 cut(s) 386
BspLI GGNNCC 2 cut(s) 20, 319
BspT107I GGYRCC 1 cut(s) 317
BsrBI CCGCTC 1 cut(s) 54
BsrFI RCCGGY 1 cut(s) 205
BsrI ACTGG 1 cut(s) 407
BssAI RCCGGY 1 cut(s) 205
BssECI CCNNGG 2 cut(s) 233, 321
BssSI CACGAG 2 cut(s) 140, 308
Bst2BI CACGAG 2 cut(s) 140, 308
Bst2UI CCWGG 2 cut(s) 277, 298
Bst4CI ACNGT 1 cut(s) 379
Bst6I CTCTTC 1 cut(s) 189
BstBAI YACGTR 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 4 cut(s) 38, 55, 329, 347
BstFNI CGCG 1 cut(s) 386
BstH2I RGCGCY 1 cut(s) 329
BstHHI GCGC 1 cut(s) 328
BstMAI GTCTC 1 cut(s) 88
BstMWI GCNNNNNNNGC 5 cut(s) 10, 113, 206, 286, 334
BstNI CCWGG 2 cut(s) 277, 298
BstSCI CCNGG 4 cut(s) 275, 296, 320, 321
BstSLI GKGCMC 1 cut(s) 322
BstUI CGCG 1 cut(s) 386
BstV1I GCAGC 2 cut(s) 91, 276
BstV2I GAAGAC 1 cut(s) 373
BsuRI GGCC 2 cut(s) 128, 275
BtgZI GCGATG 1 cut(s) 28
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 252, 375
Cac8I GCNNGC 1 cut(s) 207
CfoI GCGC 1 cut(s) 328
Cfr10I RCCGGY 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 273
Cfr9I CCCGGG 1 cut(s) 321
Csp6I GTAC 1 cut(s) 423
CviJI RGCY 8 cut(s) 37, 42, 90, 128, 275, 289, 337, 351
CviKI_1 RGCY 8 cut(s) 37, 42, 90, 128, 275, 289, 337, 351
CviQI GTAC 1 cut(s) 423
DdeI CTNAG 4 cut(s) 38, 55, 329, 347
DraI TTTAAA 1 cut(s) 429
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
EciI GGCGGA 1 cut(s) 295
Ecl136II GAGCTC 1 cut(s) 337
Eco24I GRGCYC 1 cut(s) 339
Eco53kI GAGCTC 1 cut(s) 337
Eco72I CACGTG 1 cut(s) 241
Eco88I CYCGRG 1 cut(s) 321
EcoICRI GAGCTC 1 cut(s) 337
EcoRII CCWGG 2 cut(s) 275, 296
EcoT38I GRGCYC 1 cut(s) 339
FaiI YATR 1 cut(s) 528
FauI CCCGC 3 cut(s) 202, 213, 307
Fnu4HI GCNGC 4 cut(s) 105, 108, 218, 290
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 4 cut(s) 105, 108, 218, 290
FspBI CTAG 1 cut(s) 450
GlaI GCGC 1 cut(s) 327
GluI GCNGC 4 cut(s) 105, 108, 218, 290
GsuI CTGGAG 2 cut(s) 17, 70
HaeII RGCGCY 1 cut(s) 329
HaeIII GGCC 2 cut(s) 128, 275
HapII CCGG 3 cut(s) 206, 322, 352
HhaI GCGC 1 cut(s) 328
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 2 cut(s) 122, 364
HpaII CCGG 3 cut(s) 206, 322, 352
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 1 cut(s) 188
Hpy188III TCNNGA 1 cut(s) 308
Hpy8I GTNNAC 1 cut(s) 343
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4IV ACGT 2 cut(s) 240, 264
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 113, 206, 286, 334
HpyF3I CTNAG 4 cut(s) 38, 55, 329, 347
HpySE526I ACGT 2 cut(s) 240, 264
HspAI GCGC 1 cut(s) 326
KroI GCCGGC 1 cut(s) 205
KroNI GCCGGC 1 cut(s) 207
LmnI GCTCC 1 cut(s) 334
Lsp1109I GCAGC 2 cut(s) 91, 276
LweI GCATC 1 cut(s) 219
MaeI CTAG 1 cut(s) 450
MaeII ACGT 2 cut(s) 240, 264
MaeIII GTNAC 1 cut(s) 305
MbiI CCGCTC 1 cut(s) 54
MboII GAAGA 3 cut(s) 203, 206, 373
MfeI CAATTG 1 cut(s) 74
MhlI GDGCHC 2 cut(s) 322, 339
MluCI AATT 1 cut(s) 74
MroNI GCCGGC 1 cut(s) 205
MseI TTAA 1 cut(s) 428
MspI CCGG 3 cut(s) 206, 322, 352
MspR9I CCNGG 4 cut(s) 277, 298, 322, 323
MunI CAATTG 1 cut(s) 74
MvaI CCWGG 2 cut(s) 277, 298
MvnI CGCG 1 cut(s) 386
MwoI GCNNNNNNNGC 5 cut(s) 10, 113, 206, 286, 334
NaeI GCCGGC 1 cut(s) 207
NciI CCSGG 2 cut(s) 322, 323
NgoMIV GCCGGC 1 cut(s) 205
NlaIV GGNNCC 2 cut(s) 20, 319
NmeAIII GCCGAG 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 305
PdiI GCCGGC 1 cut(s) 207
PfeI GAWTC 2 cut(s) 122, 364
PkrI GCNGC 4 cut(s) 106, 109, 219, 291
PmaCI CACGTG 1 cut(s) 241
PmlI CACGTG 1 cut(s) 241
Ppu21I YACGTR 1 cut(s) 241
Psp124BI GAGCTC 1 cut(s) 339
Psp6I CCWGG 2 cut(s) 275, 296
PspCI CACGTG 1 cut(s) 241
PspGI CCWGG 2 cut(s) 275, 296
PspN4I GGNNCC 2 cut(s) 20, 319
PspPI GGNCC 1 cut(s) 273
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
SacI GAGCTC 1 cut(s) 339
SaqAI TTAA 1 cut(s) 428
SatI GCNGC 4 cut(s) 105, 108, 218, 290
Sau96I GGNCC 1 cut(s) 273
ScaI AGTACT 1 cut(s) 424
ScrFI CCNGG 4 cut(s) 277, 298, 322, 323
SduI GDGCHC 2 cut(s) 322, 339
SfaNI GCATC 1 cut(s) 219
SmaI CCCGGG 1 cut(s) 323
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SrfI GCCCGGGC 1 cut(s) 323
Sse9I AATT 1 cut(s) 74
SsiI CCGC 8 cut(s) 52, 108, 114, 209, 217, 220, 280, 314
SspMI CTAG 1 cut(s) 450
SstI GAGCTC 1 cut(s) 339
StyD4I CCNGG 4 cut(s) 275, 296, 320, 321
TaaI ACNGT 1 cut(s) 379
TaiI ACGT 2 cut(s) 243, 267
TaqI TCGA 1 cut(s) 153
TasI AATT 1 cut(s) 74
TatI WGTACW 1 cut(s) 422
TauI GCSGC 2 cut(s) 110, 220
TfiI GAWTC 2 cut(s) 122, 364
Tru1I TTAA 1 cut(s) 428
Tru9I TTAA 1 cut(s) 428
TscAI CASTG 2 cut(s) 252, 382
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 2 cut(s) 104, 289
Tsp45I GTSAC 1 cut(s) 305
TspGWI ACGGA 2 cut(s) 134, 186
TspMI CCCGGG 1 cut(s) 321
TspRI CASTG 2 cut(s) 252, 382
XmaI CCCGGG 1 cut(s) 321
XspI CTAG 1 cut(s) 450
ZrmI AGTACT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.