Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002658.1

Orthogroup ID

OG0014104

Physical Location & Seq

Genomic Coordinates Reverse (-)

11728 .. 14813

Gene Structure 3086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002658.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ctgtgcaagtcagagctcagagctgtgctaaactttggtcctcgtatccctgaccggggatatataatgctatccctgcgatggttccctattccactccagctcagctctcacttcagctcagtccattccaaaccccaaatgagtgtctccagctcactccacaacgctgccgcaaccgcaacggattcggcctcgctcaagcacgaggtcgaagtcgaggagtttctgaatgacggatttgcccccgtccgagaagaagaggcgttgccggtgggtctgcggcgggaggcgatgccgaggcacgtggcggttatcatggacgggaacgtgaggtgggccaggcggagagggctgccgtcccggtcgggtcacgaggcgggtgcccgggcgctgagggagctcgttgacgtgagccggaaatgggggattcgggttctcaccgtcttcgcgttttcgtgtgataactgggttcgcccaaagagggaggttggttttttgatgagtttgtttgagggggtgatcaagtcagagatcaacagtcttgcaagggaaggcattcgaatatcagtcattggggattcgtcaaagctccccgattctttacagaaactgataagtgaagcagaggagaaaacaaaagacaactttagactccaacttattgtagcagtgagctacagtgggaaatacgatgtagtgcaagcatgcaaaagcatttctcagaaggtaaaagacggtctcattcaagttgaagatatcaatgaaagcgtcattgagcaggaactggaaactaattgtactgagtttccctaccctgatctactcatccgaaccagtggcgaacttagagtcagtaacttcatgttatggcagttggcctacacagaacttttattcgtaccagctctttggcctgattttgggaaggccgagtttgcggaggccttgatttcatttcagcaaaggcagagacgttatggtagacgagatttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002094 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006629 GO:0006720 GO:0006996 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009668 GO:0009987 GO:0016043 GO:0016093 GO:0016094 GO:0016740 GO:0016765 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0061024 GO:0071704 GO:0071840 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

Prenyltransf

Protein Analysis

332

Amino Acids

37.62

Weight (kDa)

7.84

Isoelectric Point (pI)

56.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58770
fragaria_vesca	FvH4_3g38480
malus_domestica	MD03G1071400.v1.1 MD03G1071500.v1.1
prunus_persica	Prupe.6G058100_v2.0.a1 Prupe.6G058100_v2.0.a1 Prupe.6G058100_v2.0.a1
pyrus_communis	pycom03g05760 pycom03g05770
rosa_chinensis	RchiOBHm_Chr5g0069331
rosa_laevigata	RLG00000036047
rosa_multiflora	Rmu_sc0002658.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011570
rosa_rugosa	Rorug05G0397000
rosa_samantha	Rh5BG472800 Rh5CG495400 Rh5DG485200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	383
AccI	GTMKAC	1 cut(s)	985
AccII	CGCG	1 cut(s)	452
AciI	CCGC	8 cut(s)	174, 180, 283, 286, 311, 346, 380, 941
AcuI	CTGAAG	1 cut(s)	100
AcvI	CACGTG	1 cut(s)	307
AfaI	GTAC	2 cut(s)	802, 903
AfiI	CCNNNNNNNGG	6 cut(s)	55, 56, 81, 424, 484, 923
AgsI	TTSAA	2 cut(s)	749, 755
AjiI	CACGTC	1 cut(s)	412
AjnI	CCWGG	1 cut(s)	341
Alw21I	GWGCWC	2 cut(s)	18, 405
Alw26I	GTCTC	3 cut(s)	154, 746, 967
AlwNI	CAGNNNCTG	2 cut(s)	613, 787
Ama87I	CYCGRG	1 cut(s)	387
AoxI	GGCC	6 cut(s)	192, 339, 879, 914, 930, 945
ApeKI	GCWGC	2 cut(s)	170, 355
ArsI	GACNNNNNNTTYG	2 cut(s)	837, 869
Asp700I	GAANNNNTTC	1 cut(s)	558
AspLEI	GCGC	1 cut(s)	394
AspS9I	GGNCC	2 cut(s)	38, 339
AsuC2I	CCSGG	4 cut(s)	56, 364, 388, 389
AsuHPI	GGTGA	2 cut(s)	433, 532
AsuII	TTCGAA	1 cut(s)	562
AvaI	CYCGRG	1 cut(s)	387
AvaII	GGWCC	1 cut(s)	38
BaeGI	GKGCMC	1 cut(s)	388
BanI	GGYRCC	1 cut(s)	383
BanII	GRGCYC	2 cut(s)	18, 405
BauI	CACGAG	2 cut(s)	206, 374
BbrPI	CACGTG	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	439
Bbv12I	GWGCWC	2 cut(s)	18, 405
BbvCI	CCTCAGC	1 cut(s)	395
BbvI	GCAGC	2 cut(s)	157, 342
BccI	CCATC	1 cut(s)	75
BceAI	ACGGC	1 cut(s)	343
BcgI	CGANNNNNNTGC	4 cut(s)	171, 205, 365, 399
BciT130I	CCWGG	1 cut(s)	343
BciVI	GTATCC	1 cut(s)	56
BclI	TGATCA	1 cut(s)	522
BcnI	CCSGG	4 cut(s)	56, 364, 388, 389
BcoDI	GTCTC	3 cut(s)	154, 746, 967
BfmI	CTRYAG	1 cut(s)	679
BfoI	RGCGCY	1 cut(s)	395
BfuI	GTATCC	1 cut(s)	56
BisI	GCNGC	4 cut(s)	171, 174, 284, 356
BlpI	GCTNAGC	1 cut(s)	104
BlsI	GCNGC	4 cut(s)	172, 175, 285, 357
Bme1390I	CCNGG	5 cut(s)	56, 343, 364, 388, 389
Bme18I	GGWCC	1 cut(s)	38
BmeT110I	CYCGRG	1 cut(s)	387
BmgBI	CACGTC	1 cut(s)	412
BmgT120I	GGNCC	2 cut(s)	38, 339
BmiI	GGNNCC	2 cut(s)	86, 385
BmrFI	CCNGG	5 cut(s)	56, 343, 364, 388, 389
BmrI	ACTGGG	1 cut(s)	478
BmsI	GCATC	1 cut(s)	285
BmuI	ACTGGG	1 cut(s)	478
BpiI	GAAGAC	1 cut(s)	439
BpmI	CTGGAG	2 cut(s)	83, 136
Bpu10I	CCTNAGC	1 cut(s)	395
Bpu1102I	GCTNAGC	1 cut(s)	104
Bpu14I	TTCGAA	1 cut(s)	562
BpuEI	CTTGAG	1 cut(s)	185
BpuMI	CCSGG	4 cut(s)	56, 364, 388, 389
BsaAI	YACGTR	1 cut(s)	307
BsaI	GGTCTC	1 cut(s)	746
BsaJI	CCNNGG	3 cut(s)	55, 299, 387
Bsc4I	CCNNNNNNNGG	6 cut(s)	55, 56, 81, 424, 484, 923
Bse118I	RCCGGY	1 cut(s)	271
Bse1I	ACTGG	3 cut(s)	473, 792, 837
BseBI	CCWGG	1 cut(s)	343
BseDI	CCNNGG	3 cut(s)	55, 299, 387
BseGI	GGATG	1 cut(s)	828
BseLI	CCNNNNNNNGG	6 cut(s)	55, 56, 81, 424, 484, 923
BseMII	CTCAG	6 cut(s)	31, 118, 135, 386, 737, 795
BseNI	ACTGG	3 cut(s)	473, 792, 837
BseRI	GAGGAG	2 cut(s)	236, 644
BseSI	GKGCMC	1 cut(s)	388
BseXI	GCAGC	2 cut(s)	157, 342
Bsh1236I	CGCG	1 cut(s)	452
Bsh1285I	CGRYCG	1 cut(s)	368
BshFI	GGCC	6 cut(s)	194, 341, 881, 916, 932, 947
BshNI	GGYRCC	1 cut(s)	383
BsiEI	CGRYCG	1 cut(s)	368
BsiHKAI	GWGCWC	2 cut(s)	18, 405
BsiHKCI	CYCGRG	1 cut(s)	387
BsiSI	CCGG	5 cut(s)	55, 272, 364, 388, 418
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	6 cut(s)	55, 56, 81, 424, 484, 923
BsmAI	GTCTC	3 cut(s)	154, 746, 967
BsmBI	CGTCTC	1 cut(s)	967
BsmFI	GGGAC	1 cut(s)	346
BsmI	GAATGC	1 cut(s)	558
BsnI	GGCC	6 cut(s)	194, 341, 881, 916, 932, 947
Bso31I	GGTCTC	1 cut(s)	746
BsoBI	CYCGRG	1 cut(s)	387
Bsp119I	TTCGAA	1 cut(s)	562
Bsp1286I	GDGCHC	3 cut(s)	18, 388, 405
Bsp143I	GATC	3 cut(s)	522, 534, 820
Bsp1720I	GCTNAGC	1 cut(s)	104
BspACI	CCGC	8 cut(s)	174, 180, 283, 286, 311, 346, 380, 941
BspANI	GGCC	6 cut(s)	194, 341, 881, 916, 932, 947
BspCNI	CTCAG	6 cut(s)	30, 117, 134, 387, 736, 796
BspFNI	CGCG	1 cut(s)	452
BspLI	GGNNCC	2 cut(s)	86, 385
BspT104I	TTCGAA	1 cut(s)	562
BspT107I	GGYRCC	1 cut(s)	383
BspTNI	GGTCTC	1 cut(s)	746
BsrFI	RCCGGY	1 cut(s)	271
BsrI	ACTGG	3 cut(s)	473, 792, 837
BssAI	RCCGGY	1 cut(s)	271
BssECI	CCNNGG	3 cut(s)	55, 299, 387
BssMI	GATC	3 cut(s)	522, 534, 820
BssSI	CACGAG	2 cut(s)	206, 374
Bst2BI	CACGAG	2 cut(s)	206, 374
Bst2UI	CCWGG	1 cut(s)	343
Bst4CI	ACNGT	4 cut(s)	445, 542, 683, 740
Bst6I	CTCTTC	1 cut(s)	255
BstBAI	YACGTR	1 cut(s)	307
BstBI	TTCGAA	1 cut(s)	562
BstC8I	GCNNGC	2 cut(s)	705, 709
BstDEI	CTNAG	7 cut(s)	17, 104, 121, 395, 723, 804, 848
BstF5I	GGATG	1 cut(s)	828
BstFNI	CGCG	1 cut(s)	452
BstH2I	RGCGCY	1 cut(s)	395
BstHHI	GCGC	1 cut(s)	394
BstKTI	GATC	3 cut(s)	525, 537, 823
BstMAI	GTCTC	3 cut(s)	154, 746, 967
BstMBI	GATC	3 cut(s)	522, 534, 820
BstMCI	CGRYCG	1 cut(s)	368
BstMWI	GCNNNNNNNGC	5 cut(s)	76, 179, 352, 400, 938
BstNI	CCWGG	1 cut(s)	343
BstNSI	RCATGY	1 cut(s)	711
BstSCI	CCNGG	5 cut(s)	54, 341, 362, 386, 387
BstSFI	CTRYAG	1 cut(s)	679
BstSLI	GKGCMC	1 cut(s)	388
BstUI	CGCG	1 cut(s)	452
BstV1I	GCAGC	2 cut(s)	157, 342
BstV2I	GAAGAC	1 cut(s)	439
BstXI	CCANNNNNNTGG	1 cut(s)	912
BsuI	GTATCC	1 cut(s)	56
BsuRI	GGCC	6 cut(s)	194, 341, 881, 916, 932, 947
BtgZI	GCGATG	2 cut(s)	94, 308
BtrI	CACGTC	1 cut(s)	412
BtsCI	GGATG	1 cut(s)	828
BtsI	GCAGTG	1 cut(s)	678
BtsIMutI	CAGTG	3 cut(s)	678, 688, 844
Cac8I	GCNNGC	2 cut(s)	705, 709
CaiI	CAGNNNCTG	2 cut(s)	613, 787
CfoI	GCGC	1 cut(s)	394
Cfr10I	RCCGGY	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	38, 339
Cfr9I	CCCGGG	1 cut(s)	387
CseI	GACGC	1 cut(s)	760
Csp6I	GTAC	2 cut(s)	801, 902
CviAII	CATG	3 cut(s)	319, 708, 865
CviQI	GTAC	2 cut(s)	801, 902
DdeI	CTNAG	7 cut(s)	17, 104, 121, 395, 723, 804, 848
DpnI	GATC	3 cut(s)	524, 536, 822
DpnII	GATC	3 cut(s)	522, 534, 820
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
EciI	GGCGGA	1 cut(s)	361
Ecl136II	GAGCTC	2 cut(s)	16, 403
Eco147I	AGGCCT	1 cut(s)	947
Eco24I	GRGCYC	2 cut(s)	18, 405
Eco31I	GGTCTC	1 cut(s)	746
Eco32I	GATATC	1 cut(s)	760
Eco47I	GGWCC	1 cut(s)	38
Eco53kI	GAGCTC	2 cut(s)	16, 403
Eco57I	CTGAAG	1 cut(s)	100
Eco72I	CACGTG	1 cut(s)	307
Eco88I	CYCGRG	1 cut(s)	387
EcoICRI	GAGCTC	2 cut(s)	16, 403
EcoRII	CCWGG	1 cut(s)	341
EcoRV	GATATC	1 cut(s)	760
EcoT38I	GRGCYC	2 cut(s)	18, 405
Esp3I	CGTCTC	1 cut(s)	967
FaeI	CATG	3 cut(s)	322, 711, 868
FaiI	YATR	8 cut(s)	63, 65, 320, 709, 866, 871, 981, 997
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	3 cut(s)	318, 707, 864
FauI	CCCGC	2 cut(s)	279, 373
FbaI	TGATCA	1 cut(s)	522
FblI	GTMKAC	1 cut(s)	985
Fnu4HI	GCNGC	4 cut(s)	171, 174, 284, 356
FokI	GGATG	1 cut(s)	815
FriOI	GRGCYC	2 cut(s)	18, 405
Fsp4HI	GCNGC	4 cut(s)	171, 174, 284, 356
GlaI	GCGC	1 cut(s)	393
GluI	GCNGC	4 cut(s)	171, 174, 284, 356
GsuI	CTGGAG	2 cut(s)	83, 136
HaeII	RGCGCY	1 cut(s)	395
HaeIII	GGCC	6 cut(s)	194, 341, 881, 916, 932, 947
HapII	CCGG	5 cut(s)	55, 272, 364, 388, 418
HgaI	GACGC	1 cut(s)	760
HhaI	GCGC	1 cut(s)	394
Hin1II	CATG	3 cut(s)	322, 711, 868
Hin6I	GCGC	1 cut(s)	392
HinP1I	GCGC	1 cut(s)	392
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HinfI	GANTC	6 cut(s)	188, 430, 581, 599, 654, 852
HpaII	CCGG	5 cut(s)	55, 272, 364, 388, 418
HphI	GGTGA	2 cut(s)	433, 532
Hpy166II	GTNNAC	2 cut(s)	409, 986
Hpy188I	TCNGA	7 cut(s)	13, 20, 231, 254, 532, 726, 833
Hpy188III	TCNNGA	1 cut(s)	374
Hpy8I	GTNNAC	2 cut(s)	409, 986
HpyAV	CCTTC	3 cut(s)	548, 721, 922
HpyCH4III	ACNGT	4 cut(s)	445, 542, 683, 740
HpyCH4IV	ACGT	4 cut(s)	306, 330, 411, 976
HpyCH4V	TGCA	4 cut(s)	6, 548, 703, 711
HpyF10VI	GCNNNNNNNGC	5 cut(s)	76, 179, 352, 400, 938
HpyF3I	CTNAG	7 cut(s)	17, 104, 121, 395, 723, 804, 848
HpySE526I	ACGT	4 cut(s)	306, 330, 411, 976
Hsp92II	CATG	3 cut(s)	322, 711, 868
HspAI	GCGC	1 cut(s)	392
Ksp22I	TGATCA	1 cut(s)	522
Kzo9I	GATC	3 cut(s)	522, 534, 820
LmnI	GCTCC	2 cut(s)	400, 597
Lsp1109I	GCAGC	2 cut(s)	157, 342
LweI	GCATC	1 cut(s)	285
MaeII	ACGT	4 cut(s)	306, 330, 411, 976
MaeIII	GTNAC	2 cut(s)	371, 857
MalI	GATC	3 cut(s)	524, 536, 822
MboI	GATC	3 cut(s)	522, 534, 820
MboII	GAAGA	4 cut(s)	269, 272, 439, 767
MhlI	GDGCHC	3 cut(s)	18, 388, 405
MluCI	AATT	1 cut(s)	796
MlyI	GAGTC	2 cut(s)	648, 861
MmeI	TCCRAC	1 cut(s)	682
MroXI	GAANNNNTTC	1 cut(s)	558
MspI	CCGG	5 cut(s)	55, 272, 364, 388, 418
MspR9I	CCNGG	5 cut(s)	56, 343, 364, 388, 389
Mva1269I	GAATGC	1 cut(s)	558
MvaI	CCWGG	1 cut(s)	343
MvnI	CGCG	1 cut(s)	452
MwoI	GCNNNNNNNGC	5 cut(s)	76, 179, 352, 400, 938
NciI	CCSGG	4 cut(s)	56, 364, 388, 389
NdeII	GATC	3 cut(s)	522, 534, 820
NlaIII	CATG	3 cut(s)	322, 711, 868
NlaIV	GGNNCC	2 cut(s)	86, 385
NmeAIII	GCCGAG	2 cut(s)	324, 958
NmuCI	GTSAC	1 cut(s)	371
NspI	RCATGY	1 cut(s)	711
NspV	TTCGAA	1 cut(s)	562
PaeI	GCATGC	1 cut(s)	711
PceI	AGGCCT	1 cut(s)	947
PctI	GAATGC	1 cut(s)	558
PdmI	GAANNNNTTC	1 cut(s)	558
PfeI	GAWTC	4 cut(s)	188, 430, 581, 599
PkrI	GCNGC	4 cut(s)	172, 175, 285, 357
PleI	GAGTC	2 cut(s)	648, 860
PmaCI	CACGTG	1 cut(s)	307
PmlI	CACGTG	1 cut(s)	307
PpsI	GAGTC	2 cut(s)	648, 860
Ppu21I	YACGTR	1 cut(s)	307
Psp124BI	GAGCTC	2 cut(s)	18, 405
Psp6I	CCWGG	1 cut(s)	341
PspCI	CACGTG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	341
PspN4I	GGNNCC	2 cut(s)	86, 385
PspPI	GGNCC	2 cut(s)	38, 339
PstNI	CAGNNNCTG	2 cut(s)	613, 787
RsaI	GTAC	2 cut(s)	802, 903
RsaNI	GTAC	2 cut(s)	801, 902
SacI	GAGCTC	2 cut(s)	18, 405
SatI	GCNGC	4 cut(s)	171, 174, 284, 356
Sau3AI	GATC	3 cut(s)	522, 534, 820
Sau96I	GGNCC	2 cut(s)	38, 339
SchI	GAGTC	2 cut(s)	648, 861
ScrFI	CCNGG	5 cut(s)	56, 343, 364, 388, 389
SduI	GDGCHC	3 cut(s)	18, 388, 405
SfaNI	GCATC	1 cut(s)	285
SfcI	CTRYAG	1 cut(s)	679
SfuI	TTCGAA	1 cut(s)	562
SinI	GGWCC	1 cut(s)	38
SmaI	CCCGGG	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
SphI	GCATGC	1 cut(s)	711
SrfI	GCCCGGGC	1 cut(s)	389
Sse9I	AATT	1 cut(s)	796
SseBI	AGGCCT	1 cut(s)	947
SsiI	CCGC	8 cut(s)	174, 180, 283, 286, 311, 346, 380, 941
SstI	GAGCTC	2 cut(s)	18, 405
StuI	AGGCCT	1 cut(s)	947
StyD4I	CCNGG	5 cut(s)	54, 341, 362, 386, 387
TaaI	ACNGT	4 cut(s)	445, 542, 683, 740
TaiI	ACGT	4 cut(s)	309, 333, 414, 979
TaqI	TCGA	3 cut(s)	213, 219, 562
TasI	AATT	1 cut(s)	796
TatI	WGTACW	1 cut(s)	800
TauI	GCSGC	2 cut(s)	176, 286
TfiI	GAWTC	4 cut(s)	188, 430, 581, 599
TscAI	CASTG	3 cut(s)	678, 688, 844
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	2 cut(s)	170, 355
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	3 cut(s)	780, 853, 945
TspGWI	ACGGA	2 cut(s)	200, 252
TspMI	CCCGGG	1 cut(s)	387
TspRI	CASTG	3 cut(s)	678, 688, 844
VpaK11BI	GGWCC	1 cut(s)	38
XceI	RCATGY	1 cut(s)	711
XmaI	CCCGGG	1 cut(s)	387
XmiI	GTMKAC	1 cut(s)	985
XmnI	GAANNNNTTC	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.