Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0014104

Physical Location & Seq

Genomic Coordinates Reverse (-)

75303157 .. 75305898

Gene Structure 2742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036047

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCTATCCCTGCGATGGTTCCCTATTCCACTCCAGCTCAGCTCTCACTTCAGCTCAGTCCATTCCAAACCCCAATTGAGTGTCTCCAGCTCACTCCACAACGCTGCCGCAACCGCAACGGATTCGGCCTCGCTCAAGCACGAGGTCAAAGTCGAGGAGTTTCTGAATGACAGATTTGCCCCCGTCCGAGAAGAAGAGGCGTTGCCGGCGGGTCTGCGGCGGGAGGCGATGCCGAGGCACGTGGCGGTTATCATGGACGGGAACGTGAGGTGGGCCAGGCGGAGAGGGCTGCCGTCCCGGTCGGGTCACGAGGCGGGTGCCCGGGCGTTGAGGGATCTCGTTGACTTGAGCCGGAAATGGGGGATTCGGGTTCTCACCGTCTTCGCGTTTTCGTGTGATAACTGGGTTCGCCCAAAGATGGAGGTTGGTTTTTTGATGAGTTTGTTTGAGGGGGTGATCAAGTCAGAGATCAACAGTCTTGCAAGGGAAGGCATTCGAATATCAGTCATAGGGGATTCGTCAAAGCTCCCCGATTCTTTACAGAAACTGATAAGTGAAGCAGAGGAGAAAACAAAAGACAACTTTAGACTCCAACTTATTATAGCAGTGAGCTACAGTGGGAAATATGATGTAGTGCAAGCATGCAAAAGCATATCTCAGAAGGTAAAAGACGGCCTCATTCAAGTTGAAGATATCAATGAAAGCGTCATCGAGCAGGAACTGGAAACTAATTGTACTGAGTTTCCCTACCCTGATCTACTCATCCGAACTAGTGGCGAACTTAGAGTCAGTAACTTCATGTTATGGCAGTTGGCCTACACAGAACTTTTATTCATACCAGCTCTTTGGCCTGATTTTGGGAAGGCCGAGTTTGCGGAGGCCTTGATTTCATTTCAGCAAAGGCAGAGACGTTATGGTAGACGAGATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002094 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006629 GO:0006720 GO:0006996 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009668 GO:0009987 GO:0016043 GO:0016093 GO:0016094 GO:0016740 GO:0016765 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0061024 GO:0071704 GO:0071840 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

Prenyltransf

Protein Analysis

311

Amino Acids

35.18

Weight (kDa)

7.74

Isoelectric Point (pI)

57.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltransf	PF01255	84 - 306	1.6e-79	Putative undecaprenyl diphosphate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58770
fragaria_vesca	FvH4_3g38480
malus_domestica	MD03G1071400.v1.1 MD03G1071500.v1.1
prunus_persica	Prupe.6G058100_v2.0.a1 Prupe.6G058100_v2.0.a1 Prupe.6G058100_v2.0.a1
pyrus_communis	pycom03g05760 pycom03g05770
rosa_chinensis	RchiOBHm_Chr5g0069331
rosa_laevigata	RLG00000036047
rosa_multiflora	Rmu_sc0002658.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011570
rosa_rugosa	Rorug05G0397000
rosa_samantha	Rh5BG472800 Rh5CG495400 Rh5DG485200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	317
AccI	GTMKAC	1 cut(s)	919
AccII	CGCG	1 cut(s)	386
AciI	CCGC	9 cut(s)	108, 114, 209, 217, 220, 245, 280, 314, 875
AclWI	GGATC	1 cut(s)	342
AcuI	CTGAAG	1 cut(s)	34
AcvI	CACGTG	1 cut(s)	241
AfaI	GTAC	1 cut(s)	736
AfiI	CCNNNNNNNGG	4 cut(s)	15, 358, 418, 857
AgsI	TTSAA	2 cut(s)	683, 689
AhlI	ACTAGT	1 cut(s)	770
AjnI	CCWGG	1 cut(s)	275
AluBI	AGCT	7 cut(s)	37, 42, 54, 90, 526, 612, 842
AluI	AGCT	7 cut(s)	37, 42, 54, 90, 526, 612, 842
Alw26I	GTCTC	2 cut(s)	88, 901
AlwI	GGATC	1 cut(s)	342
AlwNI	CAGNNNCTG	2 cut(s)	547, 721
Ama87I	CYCGRG	1 cut(s)	321
AoxI	GGCC	7 cut(s)	126, 273, 673, 813, 848, 864, 879
ApeKI	GCWGC	2 cut(s)	104, 289
ArsI	GACNNNNNNTTYG	2 cut(s)	771, 803
Asp700I	GAANNNNTTC	1 cut(s)	492
AspS9I	GGNCC	1 cut(s)	273
AsuC2I	CCSGG	3 cut(s)	298, 322, 323
AsuHPI	GGTGA	2 cut(s)	367, 466
AsuII	TTCGAA	1 cut(s)	496
AvaI	CYCGRG	1 cut(s)	321
BaeGI	GKGCMC	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	317
BauI	CACGAG	2 cut(s)	140, 308
BbrPI	CACGTG	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	373
BbvI	GCAGC	2 cut(s)	91, 276
BccI	CCATC	2 cut(s)	9, 412
BceAI	ACGGC	2 cut(s)	277, 688
BcgI	CGANNNNNNTGC	4 cut(s)	105, 139, 299, 333
BciT130I	CCWGG	1 cut(s)	277
BclI	TGATCA	1 cut(s)	456
BcnI	CCSGG	3 cut(s)	298, 322, 323
BcoDI	GTCTC	2 cut(s)	88, 901
BcuI	ACTAGT	1 cut(s)	770
BfaI	CTAG	1 cut(s)	771
BfmI	CTRYAG	1 cut(s)	613
BisI	GCNGC	4 cut(s)	105, 108, 218, 290
BlpI	GCTNAGC	1 cut(s)	38
BlsI	GCNGC	4 cut(s)	106, 109, 219, 291
Bme1390I	CCNGG	4 cut(s)	277, 298, 322, 323
BmeT110I	CYCGRG	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	2 cut(s)	20, 319
BmrFI	CCNGG	4 cut(s)	277, 298, 322, 323
BmrI	ACTGGG	1 cut(s)	412
BmsI	GCATC	1 cut(s)	219
BmuI	ACTGGG	1 cut(s)	412
BpiI	GAAGAC	1 cut(s)	373
BpmI	CTGGAG	2 cut(s)	17, 70
Bpu1102I	GCTNAGC	1 cut(s)	38
Bpu14I	TTCGAA	1 cut(s)	496
BpuEI	CTTGAG	2 cut(s)	119, 367
BpuMI	CCSGG	3 cut(s)	298, 322, 323
BsaAI	YACGTR	1 cut(s)	241
BsaJI	CCNNGG	2 cut(s)	233, 321
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 358, 418, 857
Bse118I	RCCGGY	1 cut(s)	205
Bse1I	ACTGG	2 cut(s)	407, 726
BseBI	CCWGG	1 cut(s)	277
BseDI	CCNNGG	2 cut(s)	233, 321
BseGI	GGATG	1 cut(s)	762
BseLI	CCNNNNNNNGG	4 cut(s)	15, 358, 418, 857
BseMII	CTCAG	4 cut(s)	52, 69, 671, 729
BseNI	ACTGG	2 cut(s)	407, 726
BseRI	GAGGAG	2 cut(s)	170, 578
BseSI	GKGCMC	1 cut(s)	322
BseXI	GCAGC	2 cut(s)	91, 276
Bsh1236I	CGCG	1 cut(s)	386
Bsh1285I	CGRYCG	1 cut(s)	302
BshFI	GGCC	7 cut(s)	128, 275, 675, 815, 850, 866, 881
BshNI	GGYRCC	1 cut(s)	317
BsiEI	CGRYCG	1 cut(s)	302
BsiHKCI	CYCGRG	1 cut(s)	321
BsiSI	CCGG	4 cut(s)	206, 298, 322, 352
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	4 cut(s)	15, 358, 418, 857
BsmAI	GTCTC	2 cut(s)	88, 901
BsmBI	CGTCTC	1 cut(s)	901
BsmFI	GGGAC	1 cut(s)	280
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	7 cut(s)	128, 275, 675, 815, 850, 866, 881
BsoBI	CYCGRG	1 cut(s)	321
Bsp119I	TTCGAA	1 cut(s)	496
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	4 cut(s)	334, 456, 468, 754
Bsp1720I	GCTNAGC	1 cut(s)	38
BspACI	CCGC	9 cut(s)	108, 114, 209, 217, 220, 245, 280, 314, 875
BspANI	GGCC	7 cut(s)	128, 275, 675, 815, 850, 866, 881
BspCNI	CTCAG	4 cut(s)	51, 68, 670, 730
BspFNI	CGCG	1 cut(s)	386
BspLI	GGNNCC	2 cut(s)	20, 319
BspPI	GGATC	1 cut(s)	342
BspT104I	TTCGAA	1 cut(s)	496
BspT107I	GGYRCC	1 cut(s)	317
BsrFI	RCCGGY	1 cut(s)	205
BsrI	ACTGG	2 cut(s)	407, 726
BssAI	RCCGGY	1 cut(s)	205
BssECI	CCNNGG	2 cut(s)	233, 321
BssMI	GATC	4 cut(s)	334, 456, 468, 754
BssSI	CACGAG	2 cut(s)	140, 308
Bst2BI	CACGAG	2 cut(s)	140, 308
Bst2UI	CCWGG	1 cut(s)	277
Bst4CI	ACNGT	3 cut(s)	379, 476, 617
Bst6I	CTCTTC	1 cut(s)	189
BstBAI	YACGTR	1 cut(s)	241
BstBI	TTCGAA	1 cut(s)	496
BstC8I	GCNNGC	3 cut(s)	207, 639, 643
BstDEI	CTNAG	5 cut(s)	38, 55, 657, 738, 782
BstF5I	GGATG	1 cut(s)	762
BstFNI	CGCG	1 cut(s)	386
BstKTI	GATC	4 cut(s)	337, 459, 471, 757
BstMAI	GTCTC	2 cut(s)	88, 901
BstMBI	GATC	4 cut(s)	334, 456, 468, 754
BstMCI	CGRYCG	1 cut(s)	302
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 113, 206, 286, 872
BstNI	CCWGG	1 cut(s)	277
BstNSI	RCATGY	1 cut(s)	645
BstSCI	CCNGG	4 cut(s)	275, 296, 320, 321
BstSFI	CTRYAG	1 cut(s)	613
BstSLI	GKGCMC	1 cut(s)	322
BstUI	CGCG	1 cut(s)	386
BstV1I	GCAGC	2 cut(s)	91, 276
BstV2I	GAAGAC	1 cut(s)	373
BstX2I	RGATCY	1 cut(s)	334
BstXI	CCANNNNNNTGG	1 cut(s)	846
BstYI	RGATCY	1 cut(s)	334
BsuRI	GGCC	7 cut(s)	128, 275, 675, 815, 850, 866, 881
BtgZI	GCGATG	2 cut(s)	28, 242
BtsCI	GGATG	1 cut(s)	762
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	2 cut(s)	612, 622
Cac8I	GCNNGC	3 cut(s)	207, 639, 643
CaiI	CAGNNNCTG	2 cut(s)	547, 721
Cfr10I	RCCGGY	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	273
Cfr9I	CCCGGG	1 cut(s)	321
CseI	GACGC	1 cut(s)	694
Csp6I	GTAC	1 cut(s)	735
CviAII	CATG	3 cut(s)	253, 642, 799
CviQI	GTAC	1 cut(s)	735
DdeI	CTNAG	5 cut(s)	38, 55, 657, 738, 782
DpnI	GATC	4 cut(s)	336, 458, 470, 756
DpnII	GATC	4 cut(s)	334, 456, 468, 754
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
EciI	GGCGGA	1 cut(s)	295
Eco147I	AGGCCT	1 cut(s)	881
Eco32I	GATATC	1 cut(s)	694
Eco57I	CTGAAG	1 cut(s)	34
Eco72I	CACGTG	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	275
EcoRV	GATATC	1 cut(s)	694
Esp3I	CGTCTC	1 cut(s)	901
FaeI	CATG	3 cut(s)	256, 645, 802
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	3 cut(s)	252, 641, 798
FauI	CCCGC	3 cut(s)	202, 213, 307
FbaI	TGATCA	1 cut(s)	456
FblI	GTMKAC	1 cut(s)	919
Fnu4HI	GCNGC	4 cut(s)	105, 108, 218, 290
FokI	GGATG	1 cut(s)	749
Fsp4HI	GCNGC	4 cut(s)	105, 108, 218, 290
FspBI	CTAG	1 cut(s)	771
GluI	GCNGC	4 cut(s)	105, 108, 218, 290
GsuI	CTGGAG	2 cut(s)	17, 70
HaeIII	GGCC	7 cut(s)	128, 275, 675, 815, 850, 866, 881
HapII	CCGG	4 cut(s)	206, 298, 322, 352
HgaI	GACGC	1 cut(s)	694
Hin1II	CATG	3 cut(s)	256, 645, 802
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	6 cut(s)	122, 364, 515, 533, 588, 786
HpaII	CCGG	4 cut(s)	206, 298, 322, 352
HphI	GGTGA	2 cut(s)	367, 466
Hpy166II	GTNNAC	2 cut(s)	343, 920
Hpy188I	TCNGA	5 cut(s)	165, 188, 466, 660, 767
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	2 cut(s)	343, 920
HpyAV	CCTTC	3 cut(s)	482, 655, 856
HpyCH4III	ACNGT	3 cut(s)	379, 476, 617
HpyCH4IV	ACGT	3 cut(s)	240, 264, 910
HpyCH4V	TGCA	3 cut(s)	482, 637, 645
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 113, 206, 286, 872
HpyF3I	CTNAG	5 cut(s)	38, 55, 657, 738, 782
HpySE526I	ACGT	3 cut(s)	240, 264, 910
Hsp92II	CATG	3 cut(s)	256, 645, 802
KroI	GCCGGC	1 cut(s)	205
KroNI	GCCGGC	1 cut(s)	207
Ksp22I	TGATCA	1 cut(s)	456
Kzo9I	GATC	4 cut(s)	334, 456, 468, 754
LmnI	GCTCC	1 cut(s)	531
Lsp1109I	GCAGC	2 cut(s)	91, 276
LweI	GCATC	1 cut(s)	219
MaeI	CTAG	1 cut(s)	771
MaeII	ACGT	3 cut(s)	240, 264, 910
MaeIII	GTNAC	2 cut(s)	305, 791
MalI	GATC	4 cut(s)	336, 458, 470, 756
MboI	GATC	4 cut(s)	334, 456, 468, 754
MboII	GAAGA	4 cut(s)	203, 206, 373, 701
MfeI	CAATTG	1 cut(s)	74
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	322
MluCI	AATT	2 cut(s)	74, 730
MlyI	GAGTC	2 cut(s)	582, 795
MmeI	TCCRAC	1 cut(s)	616
MroNI	GCCGGC	1 cut(s)	205
MroXI	GAANNNNTTC	1 cut(s)	492
MspI	CCGG	4 cut(s)	206, 298, 322, 352
MspR9I	CCNGG	4 cut(s)	277, 298, 322, 323
MunI	CAATTG	1 cut(s)	74
Mva1269I	GAATGC	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	277
MvnI	CGCG	1 cut(s)	386
MwoI	GCNNNNNNNGC	5 cut(s)	10, 113, 206, 286, 872
NaeI	GCCGGC	1 cut(s)	207
NciI	CCSGG	3 cut(s)	298, 322, 323
NdeII	GATC	4 cut(s)	334, 456, 468, 754
NgoMIV	GCCGGC	1 cut(s)	205
NlaIII	CATG	3 cut(s)	256, 645, 802
NlaIV	GGNNCC	2 cut(s)	20, 319
NmeAIII	GCCGAG	2 cut(s)	258, 892
NmuCI	GTSAC	1 cut(s)	305
NspI	RCATGY	1 cut(s)	645
NspV	TTCGAA	1 cut(s)	496
PaeI	GCATGC	1 cut(s)	645
PceI	AGGCCT	1 cut(s)	881
PctI	GAATGC	1 cut(s)	492
PdiI	GCCGGC	1 cut(s)	207
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	4 cut(s)	122, 364, 515, 533
PkrI	GCNGC	4 cut(s)	106, 109, 219, 291
PleI	GAGTC	2 cut(s)	582, 794
PmaCI	CACGTG	1 cut(s)	241
PmlI	CACGTG	1 cut(s)	241
PpsI	GAGTC	2 cut(s)	582, 794
Ppu21I	YACGTR	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	275
PspCI	CACGTG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	275
PspN4I	GGNNCC	2 cut(s)	20, 319
PspPI	GGNCC	1 cut(s)	273
PstNI	CAGNNNCTG	2 cut(s)	547, 721
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	1 cut(s)	736
RsaNI	GTAC	1 cut(s)	735
SatI	GCNGC	4 cut(s)	105, 108, 218, 290
Sau3AI	GATC	4 cut(s)	334, 456, 468, 754
Sau96I	GGNCC	1 cut(s)	273
SchI	GAGTC	2 cut(s)	582, 795
ScrFI	CCNGG	4 cut(s)	277, 298, 322, 323
SduI	GDGCHC	1 cut(s)	322
SfaNI	GCATC	1 cut(s)	219
SfcI	CTRYAG	1 cut(s)	613
SfuI	TTCGAA	1 cut(s)	496
SmaI	CCCGGG	1 cut(s)	323
SmlI	CTYRAG	2 cut(s)	134, 346
SmoI	CTYRAG	2 cut(s)	134, 346
SpeI	ACTAGT	1 cut(s)	770
SphI	GCATGC	1 cut(s)	645
SrfI	GCCCGGGC	1 cut(s)	323
Sse9I	AATT	2 cut(s)	74, 730
SseBI	AGGCCT	1 cut(s)	881
SsiI	CCGC	9 cut(s)	108, 114, 209, 217, 220, 245, 280, 314, 875
SspMI	CTAG	1 cut(s)	771
StuI	AGGCCT	1 cut(s)	881
StyD4I	CCNGG	4 cut(s)	275, 296, 320, 321
TaaI	ACNGT	3 cut(s)	379, 476, 617
TaiI	ACGT	3 cut(s)	243, 267, 913
TaqI	TCGA	3 cut(s)	153, 496, 711
TasI	AATT	2 cut(s)	74, 730
TatI	WGTACW	1 cut(s)	734
TauI	GCSGC	2 cut(s)	110, 220
TfiI	GAWTC	4 cut(s)	122, 364, 515, 533
TscAI	CASTG	2 cut(s)	612, 622
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	2 cut(s)	104, 289
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	4 cut(s)	714, 787, 823, 879
TspGWI	ACGGA	1 cut(s)	134
TspMI	CCCGGG	1 cut(s)	321
TspRI	CASTG	2 cut(s)	612, 622
XceI	RCATGY	1 cut(s)	645
XmaI	CCCGGG	1 cut(s)	321
XmiI	GTMKAC	1 cut(s)	919
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	1 cut(s)	771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.