Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0014104

Physical Location & Seq

Genomic Coordinates Forward (+)

5817126 .. 5819192

Gene Structure 2067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1071400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGCTATCCCTCCGCTTCCCTGTTCCAATCCAGAACGCTCTCACTCCCTCCAATCCCAGATTCTCGCGCAATCAAACACCCAGAAGAATCCGATCACATCCGCGCCTATCCAACTCTCTCTCTCTTCATTGCGCAACCGCAACCGATGCGGTTGTTCACAGGGAAGAGAGCAGAGAGCAATTTAATGACCGATTTGCCCCTGGTGTACACTTCCGGCCGGATGACGAGCCGTTGCCGGCGGGCCTACGGAGAGAGTTGATGCCAAGACACGTGGCCGTGATCATGGACGGCAACGTGAGGTGGGAGAGGCGGAGGGGGCTGCCGGCCGGGTCGGGTCACGAGGCGGGTGCGCATTCGCTGAGAGGGCTCGTTGAGCTGTGCTGTAAATGGGGGATTAGGGTTCTCACTGTTTTTGCGTTTTCTTTTGATAATTGGACTCGGCCAAAGGTGGAGGTTGAATTTCTGCTGGATTTGTTTGAGAAGATGATTAGCTCCGAAATTGACGATTTTGCAAGCGAAGGTATTCGAATATCAATCATTGGGGATTCGTCAAAGCTCCCTGACCCTTTACCGAAACTGATAAGTGATGCGGAGGAGAGAACGAAGGACAACTCTAGACTTCAACTAATTGTGGCAGTGAGCTACAGTGGAAAATATGATGTTGTGCAAGCATGCAAAAGTATTTCTCAAAAGGTAAAAGATGGCGTTATTGAAGTAGACGATATCAATGAAAGCCTCATTGAACAAGAACTAGAAACTAACTGTACCGAGTTTCCCTACCCTGATCTGCTAATACGAACAAGTGGCGAACTCAGAGTCAGTAACTTCTTGTTGTGGCAGTTGGCCTACACGGAACTTTTCTTTGCATCGGCACTTTGGCCTGATTTTGGGAAGTCTGAGTTTGTGGAGGCCTTGGTTTCCTTTCAGCAGAGGCAGAGGCGTTATGGTGGAAGAGATCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002094 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006629 GO:0006720 GO:0006996 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009668 GO:0009987 GO:0016043 GO:0016093 GO:0016094 GO:0016740 GO:0016765 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0061024 GO:0071704 GO:0071840 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

Prenyltransf

Protein Analysis

321

Amino Acids

36.46

Weight (kDa)

6.04

Isoelectric Point (pI)

49.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltransf	PF01255	94 - 316	2.1e-77	Putative undecaprenyl diphosphate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58770
fragaria_vesca	FvH4_3g38480
malus_domestica	MD03G1071400.v1.1 MD03G1071500.v1.1
prunus_persica	Prupe.6G058100_v2.0.a1 Prupe.6G058100_v2.0.a1 Prupe.6G058100_v2.0.a1
pyrus_communis	pycom03g05760 pycom03g05770
rosa_chinensis	RchiOBHm_Chr5g0069331
rosa_laevigata	RLG00000036047
rosa_multiflora	Rmu_sc0002658.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011570
rosa_rugosa	Rorug05G0397000
rosa_samantha	Rh5BG472800 Rh5CG495400 Rh5DG485200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	133, 351
AccI	GTMKAC	1 cut(s)	717
AccII	CGCG	2 cut(s)	67, 103
AciI	CCGC	8 cut(s)	13, 101, 138, 149, 239, 310, 344, 590
AcoI	YGGCCR	4 cut(s)	215, 273, 324, 440
AcsI	RAATTY	1 cut(s)	458
AcvI	CACGTG	1 cut(s)	271
AfaI	GTAC	2 cut(s)	207, 766
AfiI	CCNNNNNNNGG	1 cut(s)	887
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	4 cut(s)	458, 623, 713, 743
AjnI	CCWGG	1 cut(s)	199
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	4 cut(s)	376, 492, 556, 642
AluI	AGCT	4 cut(s)	376, 492, 556, 642
AoxI	GGCC	8 cut(s)	215, 241, 273, 324, 440, 843, 878, 909
ApeKI	GCWGC	1 cut(s)	319
ApoI	RAATTY	1 cut(s)	458
ArsI	GACNNNNNNTTYG	2 cut(s)	801, 833
Asp700I	GAANNNNTTC	1 cut(s)	522
AspLEI	GCGC	4 cut(s)	69, 105, 134, 352
AspS9I	GGNCC	1 cut(s)	241
AsuC2I	CCSGG	1 cut(s)	328
AsuII	TTCGAA	1 cut(s)	526
BanII	GRGCYC	1 cut(s)	369
BauI	CACGAG	1 cut(s)	338
BbrPI	CACGTG	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	306
BccI	CCATC	1 cut(s)	695
BceAI	ACGGC	3 cut(s)	214, 260, 304
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BciT130I	CCWGG	1 cut(s)	201
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	328
BfaI	CTAG	2 cut(s)	615, 752
BfmI	CTRYAG	1 cut(s)	643
BglII	AGATCT	1 cut(s)	955
BisI	GCNGC	1 cut(s)	320
BlsI	GCNGC	1 cut(s)	321
Bme1390I	CCNGG	2 cut(s)	201, 328
BmgT120I	GGNCC	1 cut(s)	241
BmrFI	CCNGG	2 cut(s)	201, 328
BmsI	GCATC	4 cut(s)	136, 249, 577, 875
Bpu14I	TTCGAA	1 cut(s)	526
BpuMI	CCSGG	1 cut(s)	328
BsaAI	YACGTR	1 cut(s)	271
BsaJI	CCNNGG	2 cut(s)	199, 912
Bsc4I	CCNNNNNNNGG	1 cut(s)	887
Bse118I	RCCGGY	2 cut(s)	235, 322
Bse3DI	GCAATG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	2 cut(s)	199, 912
BseGI	GGATG	2 cut(s)	97, 226
BseLI	CCNNNNNNNGG	1 cut(s)	887
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	3 cut(s)	350, 826, 888
BseRI	GAGGAG	1 cut(s)	608
BseX3I	CGGCCG	2 cut(s)	215, 324
BseXI	GCAGC	1 cut(s)	306
Bsh1236I	CGCG	2 cut(s)	67, 103
Bsh1285I	CGRYCG	2 cut(s)	218, 327
BshFI	GGCC	8 cut(s)	217, 243, 275, 326, 442, 845, 880, 911
BsiEI	CGRYCG	2 cut(s)	218, 327
BsiSI	CCGG	5 cut(s)	214, 218, 236, 323, 327
BslI	CCNNNNNNNGG	1 cut(s)	887
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	8 cut(s)	217, 243, 275, 326, 442, 845, 880, 911
Bsp119I	TTCGAA	1 cut(s)	526
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp1407I	TGTACA	1 cut(s)	205
Bsp143I	GATC	4 cut(s)	92, 279, 784, 955
BspACI	CCGC	8 cut(s)	13, 101, 138, 149, 239, 310, 344, 590
BspANI	GGCC	8 cut(s)	217, 243, 275, 326, 442, 845, 880, 911
BspCNI	CTCAG	3 cut(s)	351, 825, 889
BspFNI	CGCG	2 cut(s)	67, 103
BspT104I	TTCGAA	1 cut(s)	526
BsrDI	GCAATG	1 cut(s)	127
BsrFI	RCCGGY	2 cut(s)	235, 322
BsrGI	TGTACA	1 cut(s)	205
BssAI	RCCGGY	2 cut(s)	235, 322
BssECI	CCNNGG	2 cut(s)	199, 912
BssMI	GATC	4 cut(s)	92, 279, 784, 955
BssSI	CACGAG	1 cut(s)	338
BssT1I	CCWWGG	1 cut(s)	912
Bst2BI	CACGAG	1 cut(s)	338
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	3 cut(s)	409, 647, 764
Bst6I	CTCTTC	3 cut(s)	129, 159, 946
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstAUI	TGTACA	1 cut(s)	205
BstBAI	YACGTR	1 cut(s)	271
BstBI	TTCGAA	1 cut(s)	526
BstC8I	GCNNGC	6 cut(s)	237, 241, 324, 514, 669, 673
BstDEI	CTNAG	3 cut(s)	359, 812, 897
BstF5I	GGATG	2 cut(s)	97, 226
BstFNI	CGCG	2 cut(s)	67, 103
BstHHI	GCGC	4 cut(s)	69, 105, 134, 352
BstKTI	GATC	4 cut(s)	95, 282, 787, 958
BstMBI	GATC	4 cut(s)	92, 279, 784, 955
BstMCI	CGRYCG	2 cut(s)	218, 327
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 316, 364, 373
BstNI	CCWGG	1 cut(s)	201
BstNSI	RCATGY	1 cut(s)	675
BstSCI	CCNGG	2 cut(s)	199, 326
BstSFI	CTRYAG	1 cut(s)	643
BstUI	CGCG	2 cut(s)	67, 103
BstV1I	GCAGC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	955
BstYI	RGATCY	1 cut(s)	955
BstZI	CGGCCG	2 cut(s)	215, 324
BsuRI	GGCC	8 cut(s)	217, 243, 275, 326, 442, 845, 880, 911
BtsCI	GGATG	2 cut(s)	97, 226
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	3 cut(s)	405, 642, 652
Cac8I	GCNNGC	6 cut(s)	237, 241, 324, 514, 669, 673
CfoI	GCGC	4 cut(s)	69, 105, 134, 352
Cfr10I	RCCGGY	2 cut(s)	235, 322
Cfr13I	GGNCC	1 cut(s)	241
Csp6I	GTAC	2 cut(s)	206, 765
CspCI	CAANNNNNGTGG	2 cut(s)	252, 287
CviAII	CATG	2 cut(s)	283, 672
CviQI	GTAC	2 cut(s)	206, 765
DdeI	CTNAG	3 cut(s)	359, 812, 897
DpnI	GATC	4 cut(s)	94, 281, 786, 957
DpnII	GATC	4 cut(s)	92, 279, 784, 955
EaeI	YGGCCR	4 cut(s)	215, 273, 324, 440
EagI	CGGCCG	2 cut(s)	215, 324
Eam1104I	CTCTTC	3 cut(s)	129, 159, 946
EarI	CTCTTC	3 cut(s)	129, 159, 946
EciI	GGCGGA	1 cut(s)	325
EclXI	CGGCCG	2 cut(s)	215, 324
Eco130I	CCWWGG	1 cut(s)	912
Eco147I	AGGCCT	1 cut(s)	911
Eco24I	GRGCYC	1 cut(s)	369
Eco32I	GATATC	1 cut(s)	724
Eco52I	CGGCCG	2 cut(s)	215, 324
Eco72I	CACGTG	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	199
EcoRV	GATATC	1 cut(s)	724
EcoT14I	CCWWGG	1 cut(s)	912
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	912
FaeI	CATG	2 cut(s)	286, 675
FaiI	YATR	5 cut(s)	284, 657, 673, 945, 961
FatI	CATG	2 cut(s)	282, 671
FauI	CCCGC	2 cut(s)	232, 337
FbaI	TGATCA	1 cut(s)	279
FblI	GTMKAC	1 cut(s)	717
Fnu4HI	GCNGC	1 cut(s)	320
FokI	GGATG	2 cut(s)	84, 233
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	1 cut(s)	320
FspAI	RTGCGCAY	1 cut(s)	351
FspBI	CTAG	2 cut(s)	615, 752
FspI	TGCGCA	2 cut(s)	133, 351
GlaI	GCGC	4 cut(s)	68, 104, 133, 351
GluI	GCNGC	1 cut(s)	320
HaeIII	GGCC	8 cut(s)	217, 243, 275, 326, 442, 845, 880, 911
HapII	CCGG	5 cut(s)	214, 218, 236, 323, 327
HhaI	GCGC	4 cut(s)	69, 105, 134, 352
Hin1II	CATG	2 cut(s)	286, 675
Hin6I	GCGC	4 cut(s)	67, 103, 132, 350
HinP1I	GCGC	4 cut(s)	67, 103, 132, 350
HinfI	GANTC	5 cut(s)	60, 87, 436, 545, 816
HpaII	CCGG	5 cut(s)	214, 218, 236, 323, 327
Hpy166II	GTNNAC	4 cut(s)	157, 206, 208, 718
Hpy188I	TCNGA	4 cut(s)	92, 496, 815, 898
Hpy188III	TCNNGA	3 cut(s)	31, 338, 615
Hpy8I	GTNNAC	4 cut(s)	157, 206, 208, 718
HpyAV	CCTTC	2 cut(s)	512, 598
HpyCH4III	ACNGT	3 cut(s)	409, 647, 764
HpyCH4IV	ACGT	2 cut(s)	270, 294
HpyCH4V	TGCA	4 cut(s)	512, 667, 675, 866
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 316, 364, 373
HpyF3I	CTNAG	3 cut(s)	359, 812, 897
HpySE526I	ACGT	2 cut(s)	270, 294
Hsp92II	CATG	2 cut(s)	286, 675
HspAI	GCGC	4 cut(s)	67, 103, 132, 350
KroI	GCCGGC	2 cut(s)	235, 322
KroNI	GCCGGC	2 cut(s)	237, 324
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	4 cut(s)	92, 279, 784, 955
LmnI	GCTCC	2 cut(s)	497, 561
Lsp1109I	GCAGC	1 cut(s)	306
LweI	GCATC	4 cut(s)	136, 249, 577, 875
MaeI	CTAG	2 cut(s)	615, 752
MaeII	ACGT	2 cut(s)	270, 294
MaeIII	GTNAC	2 cut(s)	335, 821
MalI	GATC	4 cut(s)	94, 281, 786, 957
MboI	GATC	4 cut(s)	92, 279, 784, 955
MboII	GAAGA	5 cut(s)	96, 116, 176, 493, 963
MflI	RGATCY	1 cut(s)	955
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	5 cut(s)	179, 430, 458, 498, 627
MlyI	GAGTC	2 cut(s)	430, 825
MmeI	TCCRAC	1 cut(s)	135
MroNI	GCCGGC	2 cut(s)	235, 322
MroXI	GAANNNNTTC	1 cut(s)	522
MseI	TTAA	1 cut(s)	183
MspI	CCGG	5 cut(s)	214, 218, 236, 323, 327
MspR9I	CCNGG	2 cut(s)	201, 328
Mva1269I	GAATGC	1 cut(s)	352
MvaI	CCWGG	1 cut(s)	201
MvnI	CGCG	2 cut(s)	67, 103
MwoI	GCNNNNNNNGC	4 cut(s)	146, 316, 364, 373
NaeI	GCCGGC	2 cut(s)	237, 324
NciI	CCSGG	1 cut(s)	328
NdeII	GATC	4 cut(s)	92, 279, 784, 955
NgoMIV	GCCGGC	2 cut(s)	235, 322
NlaIII	CATG	2 cut(s)	286, 675
NmeAIII	GCCGAG	1 cut(s)	418
NmuCI	GTSAC	1 cut(s)	335
NsbI	TGCGCA	2 cut(s)	133, 351
NspI	RCATGY	1 cut(s)	675
NspV	TTCGAA	1 cut(s)	526
PaeI	GCATGC	1 cut(s)	675
PceI	AGGCCT	1 cut(s)	911
PctI	GAATGC	1 cut(s)	352
PdiI	GCCGGC	2 cut(s)	237, 324
PdmI	GAANNNNTTC	1 cut(s)	522
PfeI	GAWTC	3 cut(s)	60, 87, 545
PkrI	GCNGC	1 cut(s)	321
PleI	GAGTC	2 cut(s)	430, 824
PmaCI	CACGTG	1 cut(s)	271
PmlI	CACGTG	1 cut(s)	271
PpsI	GAGTC	2 cut(s)	430, 824
Ppu21I	YACGTR	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	199
PspCI	CACGTG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	955
RsaI	GTAC	2 cut(s)	207, 766
RsaNI	GTAC	2 cut(s)	206, 765
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	1 cut(s)	320
Sau3AI	GATC	4 cut(s)	92, 279, 784, 955
Sau96I	GGNCC	1 cut(s)	241
SchI	GAGTC	2 cut(s)	430, 825
ScrFI	CCNGG	2 cut(s)	201, 328
SduI	GDGCHC	1 cut(s)	369
SfaNI	GCATC	4 cut(s)	136, 249, 577, 875
SfcI	CTRYAG	1 cut(s)	643
SfuI	TTCGAA	1 cut(s)	526
SphI	GCATGC	1 cut(s)	675
Sse9I	AATT	5 cut(s)	179, 430, 458, 498, 627
SseBI	AGGCCT	1 cut(s)	911
SsiI	CCGC	8 cut(s)	13, 101, 138, 149, 239, 310, 344, 590
SspMI	CTAG	2 cut(s)	615, 752
StuI	AGGCCT	1 cut(s)	911
StyD4I	CCNGG	2 cut(s)	199, 326
StyI	CCWWGG	1 cut(s)	912
TaaI	ACNGT	3 cut(s)	409, 647, 764
TaiI	ACGT	2 cut(s)	273, 297
TaqI	TCGA	1 cut(s)	526
TaqII	GACCGA	1 cut(s)	204
TasI	AATT	5 cut(s)	179, 430, 458, 498, 627
TatI	WGTACW	1 cut(s)	205
TfiI	GAWTC	3 cut(s)	60, 87, 545
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	3 cut(s)	412, 642, 652
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	1 cut(s)	319
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	2 cut(s)	116, 744
TspGWI	ACGGA	2 cut(s)	262, 866
TspRI	CASTG	3 cut(s)	412, 642, 652
XapI	RAATTY	1 cut(s)	458
XbaI	TCTAGA	1 cut(s)	614
XceI	RCATGY	1 cut(s)	675
XmiI	GTMKAC	1 cut(s)	717
XmnI	GAANNNNTTC	1 cut(s)	522
XspI	CTAG	2 cut(s)	615, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.