MD03G1071500.v1.1

Belongs to the UPP synthase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
5821209 .. 5824159
2951 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1071500.v1.1.491

Sequence Viewer

Length: 1086 bp
ATGAGAAAGTTTCCAGAAAAACTACATATTGTAATAATTCTCCCGCTAAATTGGCCTCTGCGTACGAGTGTCCAAGTGTCTTCCAACGCTGCGAGGCTTAACGTTCAAACTCACGGAGGAGACGACGACGTAACAGTCCGCAGCATCATGTTCCTATCCCTGAGCTCTCCTATCTCAATCGAGAACGCCCTCATTCCCTTCAAACCGAGGTCCTCCCGCTCCCAAACACCCGGAATCCGATCACATCCACTCCCCTCAAATCCACTCTCTCTTCCTCGCTCAGCAGCAGCTGCTGCGGCTTTCAAGGAAGAGACGAGACAGTTTGCCCCTGGCGGAGACTTCCCGCCGGATGAGGAGTCGCTGCCCGCGGGTCTCCGGCGAGATTTGATGCCGAGGCACGTGGCGGTGATCATGGACGGTAACGTGAGGTGGGAGAAGCGGAGGGGGTTGCCGGCTGGGTCCGGTCACCAGGCCGGTGTACGGTCGGTGAGAGAGCTCATTGAGCTGAGCTCCAAATGGGGAATTGGAGTTCTCACTGTTTTTGCCTTTTCGTATGATAATTGGAATCGGTCCAAGATGGAGGTTGGATTTTTGATGACATTGTTCAAGAAGATGATTACCACCGAAATCGACAATTTGGCAAGGGACGGTGTCCGAATATCGATCATCGGAGATTCATCAAAGCTCCCAAAGTCTTTACAAAAAGTGATAAGTGACGCGGAGGAGAGAACGAAAGACAACTCTAGGCTCCACCTTATTGTGGCAGTGAGCTACAGCGGAAAATACGACGTTGTGCAAGCATGCAAAAGTATTTGTCATAAGGTAAAAGATGGCCTTGTTCAGGTGGACGATATCAATGAAAGCCTCGTCGAGCAAGAACTCGAAACTAACTGTACCGAGTTTCCCTACCCCGATCTTCTCATACGAACTGGTGGCGATATTCGAGTCAGCAACTTCTTGCTGTGGCAGTTGGCCTACACGGAACTTTTCTTTGTATCTGCTCTTTGGCCTGATTTCGGGAAAGCTGAGTTTGCGGAGGCTTTGACTTCGTTTCAGCGGAGGCAGAGGCGTTACGGTGGAAGATGA

Protein Analysis

362

Amino Acids

40.44

Weight (kDa)

9.18

Isoelectric Point (pI)

56.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prenyltransf PF01255 137 - 359 4.6e-78 Putative undecaprenyl diphosphate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014104)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 134
AccBSI CCGCTC 1 cut(s) 219
AccII CGCG 2 cut(s) 368, 719
AclI AACGTT 1 cut(s) 102
AcvI CACGTG 1 cut(s) 400
AfaI GTAC 3 cut(s) 64, 480, 895
AfiI CCNNNNNNNGG 4 cut(s) 480, 760, 841, 1016
AgsI TTSAA 4 cut(s) 107, 202, 304, 607
AjnI CCWGG 2 cut(s) 328, 468
AloI GAACNNNNNNTCC 2 cut(s) 513, 545
AluBI AGCT 8 cut(s) 165, 290, 496, 505, 510, 685, 771, 1025
AluI AGCT 8 cut(s) 165, 290, 496, 505, 510, 685, 771, 1025
Alw21I GWGCWC 3 cut(s) 167, 498, 512
Alw26I GTCTC 5 cut(s) 114, 305, 310, 330, 377
AlwNI CAGNNNCTG 2 cut(s) 290, 293
AoxI GGCC 5 cut(s) 53, 471, 832, 972, 1007
ApeKI GCWGC 7 cut(s) 89, 141, 284, 287, 290, 293, 361
AspS9I GGNCC 3 cut(s) 210, 459, 570
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 3 cut(s) 418, 458, 499
AvaII GGWCC 3 cut(s) 210, 459, 570
BanII GRGCYC 3 cut(s) 167, 498, 512
BbrPI CACGTG 1 cut(s) 400
BbsI GAAGAC 1 cut(s) 72
Bbv12I GWGCWC 3 cut(s) 167, 498, 512
BbvI GCAGC 7 cut(s) 76, 153, 277, 280, 296, 299, 348
BccI CCATC 2 cut(s) 571, 824
BciT130I CCWGG 2 cut(s) 330, 470
BclI TGATCA 1 cut(s) 408
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 5 cut(s) 114, 305, 310, 330, 377
BfaI CTAG 1 cut(s) 744
BfmI CTRYAG 1 cut(s) 772
BisI GCNGC 8 cut(s) 90, 142, 285, 288, 291, 294, 297, 362
BlpI GCTNAGC 2 cut(s) 280, 506
BlsI GCNGC 8 cut(s) 91, 143, 286, 289, 292, 295, 298, 363
Bme1390I CCNGG 3 cut(s) 231, 330, 470
Bme18I GGWCC 3 cut(s) 210, 459, 570
BmgT120I GGNCC 3 cut(s) 210, 459, 570
BmiI GGNNCC 2 cut(s) 460, 749
BmrFI CCNGG 3 cut(s) 231, 330, 470
BmsI GCATC 2 cut(s) 153, 378
BpiI GAAGAC 1 cut(s) 72
BplI GAGNNNNNCTC 2 cut(s) 494, 526
Bpu10I CCTNAGC 1 cut(s) 161
Bpu1102I GCTNAGC 2 cut(s) 280, 506
BpuMI CCSGG 1 cut(s) 231
Bsa29I ATCGAT 1 cut(s) 662
BsaAI YACGTR 1 cut(s) 400
BsaI GGTCTC 1 cut(s) 377
BsaJI CCNNGG 4 cut(s) 206, 328, 366, 392
BsaWI WCCGGW 1 cut(s) 461
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bsc4I CCNNNNNNNGG 4 cut(s) 480, 760, 841, 1016
Bse118I RCCGGY 2 cut(s) 451, 473
Bse1I ACTGG 1 cut(s) 934
BseBI CCWGG 2 cut(s) 330, 470
BseCI ATCGAT 1 cut(s) 662
BseDI CCNNGG 4 cut(s) 206, 328, 366, 392
BseGI GGATG 2 cut(s) 244, 355
BseLI CCNNNNNNNGG 4 cut(s) 480, 760, 841, 1016
BseMII CTCAG 4 cut(s) 152, 294, 497, 1017
BseNI ACTGG 1 cut(s) 934
BseRI GAGGAG 3 cut(s) 132, 368, 737
BseXI GCAGC 7 cut(s) 76, 153, 277, 280, 296, 299, 348
BseYI CCCAGC 1 cut(s) 455
Bsh1236I CGCG 2 cut(s) 368, 719
Bsh1285I CGRYCG 1 cut(s) 485
BshFI GGCC 5 cut(s) 55, 473, 834, 974, 1009
BshVI ATCGAT 1 cut(s) 662
BsiEI CGRYCG 1 cut(s) 485
BsiHKAI GWGCWC 3 cut(s) 167, 498, 512
BsiSI CCGG 6 cut(s) 231, 347, 376, 452, 462, 474
BsiWI CGTACG 1 cut(s) 62
BslFI GGGAC 1 cut(s) 659
BslI CCNNNNNNNGG 4 cut(s) 480, 760, 841, 1016
BsmAI GTCTC 5 cut(s) 114, 305, 310, 330, 377
BsmBI CGTCTC 2 cut(s) 114, 305
BsmFI GGGAC 1 cut(s) 659
BsnI GGCC 5 cut(s) 55, 473, 834, 974, 1009
Bso31I GGTCTC 1 cut(s) 377
Bsp1286I GDGCHC 3 cut(s) 167, 498, 512
Bsp143I GATC 4 cut(s) 239, 408, 663, 913
Bsp1720I GCTNAGC 2 cut(s) 280, 506
BspANI GGCC 5 cut(s) 55, 473, 834, 974, 1009
BspCNI CTCAG 4 cut(s) 153, 293, 498, 1018
BspDI ATCGAT 1 cut(s) 662
BspFNI CGCG 2 cut(s) 368, 719
BspLI GGNNCC 2 cut(s) 460, 749
BspTNI GGTCTC 1 cut(s) 377
BsrBI CCGCTC 1 cut(s) 219
BsrFI RCCGGY 2 cut(s) 451, 473
BsrI ACTGG 1 cut(s) 934
BssAI RCCGGY 2 cut(s) 451, 473
BssECI CCNNGG 4 cut(s) 206, 328, 366, 392
BssMI GATC 4 cut(s) 239, 408, 663, 913
Bst2UI CCWGG 2 cut(s) 330, 470
Bst4CI ACNGT 8 cut(s) 136, 321, 419, 483, 538, 650, 893, 1076
Bst6I CTCTTC 2 cut(s) 276, 303
BstAPI GCANNNNNTGC 2 cut(s) 290, 293
BstBAI YACGTR 1 cut(s) 400
BstC8I GCNNGC 4 cut(s) 366, 453, 798, 802
BstDEI CTNAG 4 cut(s) 161, 280, 506, 1026
BstDSI CCRYGG 1 cut(s) 366
BstEII GGTNACC 1 cut(s) 464
BstENI CCTNNNNNAGG 1 cut(s) 839
BstF5I GGATG 2 cut(s) 244, 355
BstFNI CGCG 2 cut(s) 368, 719
BstKTI GATC 4 cut(s) 242, 411, 666, 916
BstMAI GTCTC 5 cut(s) 114, 305, 310, 330, 377
BstMBI GATC 4 cut(s) 239, 408, 663, 913
BstMCI CGRYCG 1 cut(s) 485
BstMWI GCNNNNNNNGC 6 cut(s) 52, 290, 293, 296, 502, 1031
BstNI CCWGG 2 cut(s) 330, 470
BstNSI RCATGY 1 cut(s) 804
BstPI GGTNACC 1 cut(s) 464
BstSCI CCNGG 3 cut(s) 229, 328, 468
BstSFI CTRYAG 1 cut(s) 772
BstUI CGCG 2 cut(s) 368, 719
BstV1I GCAGC 7 cut(s) 76, 153, 277, 280, 296, 299, 348
BstV2I GAAGAC 1 cut(s) 72
Bsu15I ATCGAT 1 cut(s) 662
BsuRI GGCC 5 cut(s) 55, 473, 834, 974, 1009
BsuTUI ATCGAT 1 cut(s) 662
BtgI CCRYGG 1 cut(s) 366
BtsCI GGATG 2 cut(s) 244, 355
BtsI GCAGTG 1 cut(s) 771
BtsIMutI CAGTG 2 cut(s) 534, 771
Cac8I GCNNGC 4 cut(s) 366, 453, 798, 802
CaiI CAGNNNCTG 2 cut(s) 290, 293
Cfr10I RCCGGY 2 cut(s) 451, 473
Cfr13I GGNCC 3 cut(s) 210, 459, 570
Cfr42I CCGCGG 1 cut(s) 369
ClaI ATCGAT 1 cut(s) 662
CseI GACGC 1 cut(s) 725
Csp6I GTAC 3 cut(s) 63, 479, 894
CviAII CATG 3 cut(s) 148, 412, 801
CviQI GTAC 3 cut(s) 63, 479, 894
DdeI CTNAG 4 cut(s) 161, 280, 506, 1026
DpnI GATC 4 cut(s) 241, 410, 665, 915
DpnII GATC 4 cut(s) 239, 408, 663, 913
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
Eam1104I CTCTTC 2 cut(s) 276, 303
EarI CTCTTC 2 cut(s) 276, 303
EciI GGCGGA 1 cut(s) 348
Ecl136II GAGCTC 3 cut(s) 165, 496, 510
Eco24I GRGCYC 3 cut(s) 167, 498, 512
Eco31I GGTCTC 1 cut(s) 377
Eco32I GATATC 1 cut(s) 853
Eco47I GGWCC 3 cut(s) 210, 459, 570
Eco53kI GAGCTC 3 cut(s) 165, 496, 510
Eco72I CACGTG 1 cut(s) 400
Eco91I GGTNACC 1 cut(s) 464
EcoICRI GAGCTC 3 cut(s) 165, 496, 510
EcoNI CCTNNNNNAGG 1 cut(s) 839
EcoO109I RGGNCCY 1 cut(s) 210
EcoO65I GGTNACC 1 cut(s) 464
EcoRII CCWGG 2 cut(s) 328, 468
EcoRV GATATC 1 cut(s) 853
EcoT38I GRGCYC 3 cut(s) 167, 498, 512
Esp3I CGTCTC 2 cut(s) 114, 305
FaeI CATG 3 cut(s) 151, 415, 804
FaiI YATR 7 cut(s) 27, 149, 413, 555, 802, 819, 923
FalI AAGNNNNNCTT 2 cut(s) 819, 851
FaqI GGGAC 1 cut(s) 659
FatI CATG 3 cut(s) 147, 411, 800
FauI CCCGC 5 cut(s) 51, 224, 351, 361, 373
FbaI TGATCA 1 cut(s) 408
Fnu4HI GCNGC 8 cut(s) 90, 142, 285, 288, 291, 294, 297, 362
FokI GGATG 2 cut(s) 231, 362
FriOI GRGCYC 3 cut(s) 167, 498, 512
Fsp4HI GCNGC 8 cut(s) 90, 142, 285, 288, 291, 294, 297, 362
FspBI CTAG 1 cut(s) 744
GluI GCNGC 8 cut(s) 90, 142, 285, 288, 291, 294, 297, 362
GsaI CCCAGC 1 cut(s) 459
HaeIII GGCC 5 cut(s) 55, 473, 834, 974, 1009
HapII CCGG 6 cut(s) 231, 347, 376, 452, 462, 474
HgaI GACGC 1 cut(s) 725
Hin1II CATG 3 cut(s) 151, 415, 804
HinfI GANTC 5 cut(s) 234, 356, 565, 674, 945
HpaII CCGG 6 cut(s) 231, 347, 376, 452, 462, 474
HphI GGTGA 3 cut(s) 418, 458, 499
Hpy166II GTNNAC 2 cut(s) 479, 847
Hpy188I TCNGA 3 cut(s) 239, 656, 671
Hpy188III TCNNGA 4 cut(s) 14, 181, 607, 1018
Hpy8I GTNNAC 2 cut(s) 479, 847
Hpy99I CGWCG 4 cut(s) 128, 131, 791, 872
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 8 cut(s) 136, 321, 419, 483, 538, 650, 893, 1076
HpyCH4IV ACGT 5 cut(s) 102, 129, 399, 423, 789
HpyCH4V TGCA 2 cut(s) 796, 804
HpyF10VI GCNNNNNNNGC 6 cut(s) 52, 290, 293, 296, 502, 1031
HpyF3I CTNAG 4 cut(s) 161, 280, 506, 1026
HpySE526I ACGT 5 cut(s) 102, 129, 399, 423, 789
Hsp92II CATG 3 cut(s) 151, 415, 804
KroI GCCGGC 1 cut(s) 451
KroNI GCCGGC 1 cut(s) 453
Ksp22I TGATCA 1 cut(s) 408
KspI CCGCGG 1 cut(s) 369
Kzo9I GATC 4 cut(s) 239, 408, 663, 913
LmnI GCTCC 4 cut(s) 224, 515, 690, 753
Lsp1109I GCAGC 7 cut(s) 76, 153, 277, 280, 296, 299, 348
LweI GCATC 2 cut(s) 153, 378
MaeI CTAG 1 cut(s) 744
MaeII ACGT 5 cut(s) 102, 129, 399, 423, 789
MaeIII GTNAC 5 cut(s) 130, 419, 464, 713, 1070
MalI GATC 4 cut(s) 241, 410, 665, 915
MbiI CCGCTC 1 cut(s) 219
MboI GATC 4 cut(s) 239, 408, 663, 913
MboII GAAGA 5 cut(s) 72, 263, 320, 622, 908
MhlI GDGCHC 3 cut(s) 167, 498, 512
MluCI AATT 5 cut(s) 36, 49, 522, 559, 634
MlyI GAGTC 2 cut(s) 365, 954
MmeI TCCRAC 2 cut(s) 108, 565
MroNI GCCGGC 1 cut(s) 451
MseI TTAA 1 cut(s) 99
MspA1I CMGCKG 4 cut(s) 290, 368, 777, 1057
MspI CCGG 6 cut(s) 231, 347, 376, 452, 462, 474
MspR9I CCNGG 3 cut(s) 231, 330, 470
MvaI CCWGG 2 cut(s) 330, 470
MvnI CGCG 2 cut(s) 368, 719
MwoI GCNNNNNNNGC 6 cut(s) 52, 290, 293, 296, 502, 1031
NaeI GCCGGC 1 cut(s) 453
NciI CCSGG 1 cut(s) 231
NdeII GATC 4 cut(s) 239, 408, 663, 913
NgoMIV GCCGGC 1 cut(s) 451
NlaIII CATG 3 cut(s) 151, 415, 804
NlaIV GGNNCC 2 cut(s) 460, 749
NmeAIII GCCGAG 1 cut(s) 417
NmuCI GTSAC 2 cut(s) 464, 713
NspI RCATGY 1 cut(s) 804
PaeI GCATGC 1 cut(s) 804
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PdiI GCCGGC 1 cut(s) 453
PfeI GAWTC 3 cut(s) 234, 565, 674
Pfl23II CGTACG 1 cut(s) 62
PflFI GACNNNGTC 1 cut(s) 650
PkrI GCNGC 8 cut(s) 91, 143, 286, 289, 292, 295, 298, 363
PleI GAGTC 2 cut(s) 364, 953
PmaCI CACGTG 1 cut(s) 400
PmlI CACGTG 1 cut(s) 400
PpsI GAGTC 2 cut(s) 364, 953
Ppu21I YACGTR 1 cut(s) 400
PpuMI RGGWCCY 1 cut(s) 210
Psp124BI GAGCTC 3 cut(s) 167, 498, 512
Psp1406I AACGTT 1 cut(s) 102
Psp5II RGGWCCY 1 cut(s) 210
Psp6I CCWGG 2 cut(s) 328, 468
PspCI CACGTG 1 cut(s) 400
PspEI GGTNACC 1 cut(s) 464
PspFI CCCAGC 1 cut(s) 455
PspGI CCWGG 2 cut(s) 328, 468
PspLI CGTACG 1 cut(s) 62
PspN4I GGNNCC 2 cut(s) 460, 749
PspPI GGNCC 3 cut(s) 210, 459, 570
PspPPI RGGWCCY 1 cut(s) 210
PstNI CAGNNNCTG 2 cut(s) 290, 293
PsyI GACNNNGTC 1 cut(s) 650
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 3 cut(s) 64, 480, 895
RsaNI GTAC 3 cut(s) 63, 479, 894
SacI GAGCTC 3 cut(s) 167, 498, 512
SacII CCGCGG 1 cut(s) 369
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 8 cut(s) 90, 142, 285, 288, 291, 294, 297, 362
Sau3AI GATC 4 cut(s) 239, 408, 663, 913
Sau96I GGNCC 3 cut(s) 210, 459, 570
SchI GAGTC 2 cut(s) 365, 954
ScrFI CCNGG 3 cut(s) 231, 330, 470
SduI GDGCHC 3 cut(s) 167, 498, 512
SfaNI GCATC 2 cut(s) 153, 378
SfcI CTRYAG 1 cut(s) 772
Sfr303I CCGCGG 1 cut(s) 369
SgrBI CCGCGG 1 cut(s) 369
SinI GGWCC 3 cut(s) 210, 459, 570
SphI GCATGC 1 cut(s) 804
Sse9I AATT 5 cut(s) 36, 49, 522, 559, 634
SspMI CTAG 1 cut(s) 744
SstI GAGCTC 3 cut(s) 167, 498, 512
StyD4I CCNGG 3 cut(s) 229, 328, 468
TaaI ACNGT 8 cut(s) 136, 321, 419, 483, 538, 650, 893, 1076
TaiI ACGT 5 cut(s) 105, 132, 402, 426, 792
TaqI TCGA 6 cut(s) 180, 630, 662, 870, 882, 943
TaqII GACCGA 1 cut(s) 558
TasI AATT 5 cut(s) 36, 49, 522, 559, 634
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 3 cut(s) 234, 565, 674
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 2 cut(s) 541, 771
TseFI GTSAC 2 cut(s) 464, 713
TseI GCWGC 7 cut(s) 89, 141, 284, 287, 290, 293, 361
Tsp45I GTSAC 2 cut(s) 464, 713
TspDTI ATGAA 2 cut(s) 666, 873
TspGWI ACGGA 2 cut(s) 129, 995
TspRI CASTG 2 cut(s) 541, 771
Tth111I GACNNNGTC 1 cut(s) 650
VpaK11BI GGWCC 3 cut(s) 210, 459, 570
XagI CCTNNNNNAGG 1 cut(s) 839
XceI RCATGY 1 cut(s) 804
XspI CTAG 1 cut(s) 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.