Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004603

Physical Location & Seq

Genomic Coordinates Reverse (-)

23808461 .. 23811292

Gene Structure 2832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G58970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCGGATTTCAAACCAAGGATCGAGATTTCGTTCCTTGAAACCTTCATTTGCAGCGCTTTCGCTGCTTGTTTTGCTGAGTTATGTACTATACCGTTGGACACAGCCAAAGTTAGACTTCAGCTTCAAAGAAAGATTCCCACTGGAGATGGTGAGAATTTGCCCAAGTATAGAGGATCAATTGGTACTCTAGCTACCATAGCTAGAGAAGAAGGTATTTCAGGTCTTTGGAAAGGTGTTATTGCAGGACTTCATCGCCAATGTATCTATGGTGGCTTAAGGATTGGGTTATATGAGCCTGTGAAGACACTTTTGGTTGGAAGTGACTTTATTGGCGATATTCCTTTATATCAAAAGATTCTTGCAGCTTTGTTAACTGGAGCTATAGCTATTATTGTAGCTAATCCAACTGATCTTGTTAAAGTTCGGCTTCAATCAGAAGGAAAGTTACCGGCTGGGGTTCCTAGGCGTTATGCAGGAGCTGTAGACGCTTATTTCACCATTGTGAAGCTGGAAGGAGTTAGTGCGCTATGGACTGGACTTGGTCCCAATATTGCCCGGAATGCTATTGTAAATGCTGCAGAGTTAGCTAGTTATGATCAAATAAAGGAGACAATTATGAAAATTCCGTTCTTCAGAGACAGTGTTTTAACTCATCTACTAGCTGGTTTAGCTGCAGGCTTCTTCGCTGTCTGCATCGGTTCTCCAATTGATGTGGTGAAATCTAGAATGATGGGAGACTCTACTTACCGAAACACAGTCGATTGCTTCATCAAAACGATGAAGACCGAGGGGATTATGGCATTCTACAAAGGATTTCTCCCGAATTTTACACGGCTAGGAACCTGGAATGCCATTATGTTCCTCACATTAGAACAAGTGAAAAAAGTGTTTCTAAGAGAAGTCTTGTACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0006950 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009628 GO:0012505 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:1902600 GO:1903825 GO:1905039 GO:1990542 GO:1990845

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

305

Amino Acids

33.44

Weight (kDa)

9.05

Isoelectric Point (pI)

27.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	10 - 107	1.2e-21	Mitochondrial carrier protein
Mito_carr	PF00153	114 - 208	6.9e-22	Mitochondrial carrier protein
Mito_carr	PF00153	214 - 300	4.7e-25	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58970 AT5G58970
fragaria_vesca	FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720
malus_domestica	MD03G1078200.v1.1 MD11G1082900.v1.1
prunus_persica	Prupe.6G063200_v2.0.a1 Prupe.6G063200_v2.0.a1 Prupe.6G063200_v2.0.a1
pyrus_communis	pycom03g06250 pycom11g07100
rosa_chinensis	RchiOBHm_Chr1g0328771 RchiOBHm_Chr5g0067991
rosa_laevigata	RLG00000035950
rosa_multiflora	Rmu_sc0000435.1_g000035
rosa_roxburghii	Rroxscaffold_1G00012610 Rroxscaffold_1G00013320 Rroxscaffold_2G00133940
rosa_rugosa	Rorug05G0387100 Rorug05G0387100
rosa_samantha	Rh5AG446000 Rh5BG463500 Rh5CG485400 Rh5DG477500
rosa_wichuraiana	Rw5G041650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	486
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	29, 184
AcsI	RAATTY	3 cut(s)	157, 624, 826
AcuI	CTGAAG	2 cut(s)	104, 619
AfaI	GTAC	3 cut(s)	88, 187, 911
AfeI	AGCGCT	1 cut(s)	58
AflII	CTTAAG	1 cut(s)	277
AgsI	TTSAA	4 cut(s)	13, 41, 128, 434
AjnI	CCWGG	1 cut(s)	845
AjuI	GAANNNNNNNTTGG	2 cut(s)	296, 328
AleI	CACNNNNGTG	1 cut(s)	503
Alw26I	GTCTC	3 cut(s)	605, 633, 732
AlwI	GGATC	2 cut(s)	29, 184
AlwNI	CAGNNNCTG	1 cut(s)	482
Aor51HI	AGCGCT	1 cut(s)	58
ApeKI	GCWGC	5 cut(s)	54, 65, 365, 578, 674
ApoI	RAATTY	3 cut(s)	157, 624, 826
AspA2I	CCTAGG	1 cut(s)	464
AspLEI	GCGC	2 cut(s)	59, 529
AspS9I	GGNCC	1 cut(s)	545
AsuC2I	CCSGG	1 cut(s)	559
AsuHPI	GGTGA	3 cut(s)	164, 490, 730
AvaII	GGWCC	1 cut(s)	545
AvrII	CCTAGG	1 cut(s)	464
BarI	GAAGNNNNNNTAC	2 cut(s)	432, 464
BbsI	GAAGAC	2 cut(s)	311, 791
BbvI	GCAGC	5 cut(s)	52, 66, 377, 565, 661
BccI	CCATC	2 cut(s)	143, 727
BceAI	ACGGC	1 cut(s)	851
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	1 cut(s)	847
BclI	TGATCA	1 cut(s)	598
BcnI	CCSGG	1 cut(s)	559
BcoDI	GTCTC	3 cut(s)	605, 633, 732
BfaI	CTAG	7 cut(s)	191, 204, 465, 591, 662, 726, 839
BfmI	CTRYAG	4 cut(s)	384, 483, 579, 675
BfoI	RGCGCY	1 cut(s)	60
BfrI	CTTAAG	1 cut(s)	277
BisI	GCNGC	5 cut(s)	55, 66, 366, 579, 675
BlnI	CCTAGG	1 cut(s)	464
BlsI	GCNGC	5 cut(s)	56, 67, 367, 580, 676
Bme1390I	CCNGG	2 cut(s)	559, 847
Bme18I	GGWCC	1 cut(s)	545
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	3 cut(s)	462, 547, 844
BmrFI	CCNGG	2 cut(s)	559, 847
BmsI	GCATC	1 cut(s)	705
BpiI	GAAGAC	2 cut(s)	311, 791
BpmI	CTGGAG	2 cut(s)	165, 399
BpuMI	CCSGG	1 cut(s)	559
BsaJI	CCNNGG	3 cut(s)	17, 464, 789
Bse118I	RCCGGY	1 cut(s)	451
Bse1I	ACTGG	3 cut(s)	148, 382, 541
BseBI	CCWGG	1 cut(s)	847
BseDI	CCNNGG	3 cut(s)	17, 464, 789
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	3 cut(s)	148, 382, 541
BseXI	GCAGC	5 cut(s)	52, 66, 377, 565, 661
BseYI	CCCAGC	1 cut(s)	455
BsiSI	CCGG	2 cut(s)	452, 559
BslFI	GGGAC	1 cut(s)	531
BsmAI	GTCTC	3 cut(s)	605, 633, 732
BsmFI	GGGAC	1 cut(s)	531
BsmI	GAATGC	3 cut(s)	568, 803, 856
Bsp143I	GATC	4 cut(s)	21, 176, 412, 598
BspACI	CCGC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	70
BspLI	GGNNCC	3 cut(s)	462, 547, 844
BspMAI	CTGCAG	2 cut(s)	583, 679
BspPI	GGATC	2 cut(s)	29, 184
BspTI	CTTAAG	1 cut(s)	277
BsrFI	RCCGGY	1 cut(s)	451
BsrI	ACTGG	3 cut(s)	148, 382, 541
BssAI	RCCGGY	1 cut(s)	451
BssECI	CCNNGG	3 cut(s)	17, 464, 789
BssMI	GATC	4 cut(s)	21, 176, 412, 598
BssT1I	CCWWGG	2 cut(s)	17, 464
Bst2UI	CCWGG	1 cut(s)	847
Bst4CI	ACNGT	3 cut(s)	96, 644, 760
BstAFI	CTTAAG	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	679
BstDEI	CTNAG	2 cut(s)	78, 896
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	2 cut(s)	59, 529
BstKTI	GATC	4 cut(s)	24, 179, 415, 601
BstMAI	GTCTC	3 cut(s)	605, 633, 732
BstMBI	GATC	4 cut(s)	21, 176, 412, 598
BstMWI	GCNNNNNNNGC	7 cut(s)	65, 74, 200, 488, 563, 587, 671
BstNI	CCWGG	1 cut(s)	847
BstSCI	CCNGG	2 cut(s)	557, 845
BstSFI	CTRYAG	4 cut(s)	384, 483, 579, 675
BstV1I	GCAGC	5 cut(s)	52, 66, 377, 565, 661
BstV2I	GAAGAC	2 cut(s)	311, 791
BtgZI	GCGATG	1 cut(s)	239
BtsIMutI	CAGTG	2 cut(s)	141, 649
Cac8I	GCNNGC	1 cut(s)	679
CaiI	CAGNNNCTG	1 cut(s)	482
CfoI	GCGC	2 cut(s)	59, 529
Cfr10I	RCCGGY	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	545
CseI	GACGC	1 cut(s)	497
Csp6I	GTAC	3 cut(s)	87, 186, 910
CspCI	CAANNNNNGTGG	2 cut(s)	696, 731
CviQI	GTAC	3 cut(s)	87, 186, 910
DdeI	CTNAG	2 cut(s)	78, 896
DpnI	GATC	4 cut(s)	23, 178, 414, 600
DpnII	GATC	4 cut(s)	21, 176, 412, 598
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	17, 464
Eco47I	GGWCC	1 cut(s)	545
Eco47III	AGCGCT	1 cut(s)	58
Eco57I	CTGAAG	2 cut(s)	104, 619
EcoRII	CCWGG	1 cut(s)	845
EcoT14I	CCWWGG	2 cut(s)	17, 464
ErhI	CCWWGG	2 cut(s)	17, 464
FalI	AAGNNNNNCTT	4 cut(s)	102, 134, 414, 446
FaqI	GGGAC	1 cut(s)	531
FbaI	TGATCA	1 cut(s)	598
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	5 cut(s)	55, 66, 366, 579, 675
Fsp4HI	GCNGC	5 cut(s)	55, 66, 366, 579, 675
FspBI	CTAG	7 cut(s)	191, 204, 465, 591, 662, 726, 839
GlaI	GCGC	2 cut(s)	58, 528
GluI	GCNGC	5 cut(s)	55, 66, 366, 579, 675
GsaI	CCCAGC	1 cut(s)	459
GsuI	CTGGAG	2 cut(s)	165, 399
HaeII	RGCGCY	1 cut(s)	60
HapII	CCGG	2 cut(s)	452, 559
HgaI	GACGC	1 cut(s)	497
HhaI	GCGC	2 cut(s)	59, 529
Hin6I	GCGC	2 cut(s)	57, 527
HinP1I	GCGC	2 cut(s)	57, 527
HincII	GTYRAC	1 cut(s)	375
HindII	GTYRAC	1 cut(s)	375
HinfI	GANTC	3 cut(s)	136, 358, 740
HpaI	GTTAAC	1 cut(s)	375
HpaII	CCGG	2 cut(s)	452, 559
HphI	GGTGA	3 cut(s)	164, 490, 730
Hpy166II	GTNNAC	2 cut(s)	375, 487
Hpy188I	TCNGA	2 cut(s)	439, 638
Hpy188III	TCNNGA	3 cut(s)	25, 726, 823
Hpy8I	GTNNAC	2 cut(s)	375, 487
HpyAV	CCTTC	4 cut(s)	55, 206, 434, 509
HpyCH4III	ACNGT	3 cut(s)	96, 644, 760
HpyCH4V	TGCA	7 cut(s)	54, 245, 365, 476, 581, 677, 696
HpyF10VI	GCNNNNNNNGC	7 cut(s)	65, 74, 200, 488, 563, 587, 671
HpyF3I	CTNAG	2 cut(s)	78, 896
HspAI	GCGC	2 cut(s)	57, 527
Ksp22I	TGATCA	1 cut(s)	598
KspAI	GTTAAC	1 cut(s)	375
Kzo9I	GATC	4 cut(s)	21, 176, 412, 598
LmnI	GCTCC	2 cut(s)	380, 479
Lsp1109I	GCAGC	5 cut(s)	52, 66, 377, 565, 661
LweI	GCATC	1 cut(s)	705
MaeI	CTAG	7 cut(s)	191, 204, 465, 591, 662, 726, 839
MaeIII	GTNAC	2 cut(s)	323, 447
MalI	GATC	4 cut(s)	23, 178, 414, 600
MboI	GATC	4 cut(s)	21, 176, 412, 598
MboII	GAAGA	5 cut(s)	221, 316, 625, 676, 796
MfeI	CAATTG	2 cut(s)	180, 708
MluCI	AATT	6 cut(s)	157, 180, 615, 624, 708, 826
MlyI	GAGTC	1 cut(s)	734
MmeI	TCCRAC	3 cut(s)	78, 298, 431
MnlI	CCTC	3 cut(s)	167, 784, 875
MseI	TTAA	4 cut(s)	278, 374, 420, 650
MslI	CAYNNNNRTG	1 cut(s)	503
MspCI	CTTAAG	1 cut(s)	277
MspI	CCGG	2 cut(s)	452, 559
MspR9I	CCNGG	2 cut(s)	559, 847
MunI	CAATTG	2 cut(s)	180, 708
Mva1269I	GAATGC	3 cut(s)	568, 803, 856
MvaI	CCWGG	1 cut(s)	847
MwoI	GCNNNNNNNGC	7 cut(s)	65, 74, 200, 488, 563, 587, 671
NciI	CCSGG	1 cut(s)	559
NdeII	GATC	4 cut(s)	21, 176, 412, 598
NlaIV	GGNNCC	3 cut(s)	462, 547, 844
NmuCI	GTSAC	1 cut(s)	323
OliI	CACNNNNGTG	1 cut(s)	503
PctI	GAATGC	3 cut(s)	568, 803, 856
PfeI	GAWTC	2 cut(s)	136, 358
PflFI	GACNNNGTC	1 cut(s)	543
PkrI	GCNGC	5 cut(s)	56, 67, 367, 580, 676
PleI	GAGTC	1 cut(s)	734
PpsI	GAGTC	1 cut(s)	734
Psp6I	CCWGG	1 cut(s)	845
PspFI	CCCAGC	1 cut(s)	455
PspGI	CCWGG	1 cut(s)	845
PspN4I	GGNNCC	3 cut(s)	462, 547, 844
PspPI	GGNCC	1 cut(s)	545
PstI	CTGCAG	2 cut(s)	583, 679
PstNI	CAGNNNCTG	1 cut(s)	482
PsyI	GACNNNGTC	1 cut(s)	543
RsaI	GTAC	3 cut(s)	88, 187, 911
RsaNI	GTAC	3 cut(s)	87, 186, 910
RseI	CAYNNNNRTG	1 cut(s)	503
SaqAI	TTAA	4 cut(s)	278, 374, 420, 650
SatI	GCNGC	5 cut(s)	55, 66, 366, 579, 675
Sau3AI	GATC	4 cut(s)	21, 176, 412, 598
Sau96I	GGNCC	1 cut(s)	545
SchI	GAGTC	1 cut(s)	734
ScrFI	CCNGG	2 cut(s)	559, 847
SfaNI	GCATC	1 cut(s)	705
SfcI	CTRYAG	4 cut(s)	384, 483, 579, 675
SinI	GGWCC	1 cut(s)	545
SmiMI	CAYNNNNRTG	1 cut(s)	503
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	6 cut(s)	157, 180, 615, 624, 708, 826
SsiI	CCGC	1 cut(s)	5
SspI	AATATT	1 cut(s)	553
SspMI	CTAG	7 cut(s)	191, 204, 465, 591, 662, 726, 839
StyD4I	CCNGG	2 cut(s)	557, 845
StyI	CCWWGG	2 cut(s)	17, 464
TaaI	ACNGT	3 cut(s)	96, 644, 760
TaqI	TCGA	2 cut(s)	24, 762
TaqII	GACCGA	1 cut(s)	803
TasI	AATT	6 cut(s)	157, 180, 615, 624, 708, 826
TatI	WGTACW	1 cut(s)	86
TfiI	GAWTC	2 cut(s)	136, 358
Tru1I	TTAA	4 cut(s)	278, 374, 420, 650
Tru9I	TTAA	4 cut(s)	278, 374, 420, 650
TscAI	CASTG	2 cut(s)	148, 649
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	5 cut(s)	54, 65, 365, 578, 674
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	5 cut(s)	37, 242, 635, 760, 797
TspGWI	ACGGA	1 cut(s)	618
TspRI	CASTG	2 cut(s)	148, 649
Tth111I	GACNNNGTC	1 cut(s)	543
Vha464I	CTTAAG	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	545
XapI	RAATTY	3 cut(s)	157, 624, 826
XbaI	TCTAGA	1 cut(s)	725
XcmI	CCANNNNNNNNNTGG	2 cut(s)	266, 508
XmaJI	CCTAGG	1 cut(s)	464
XmiI	GTMKAC	1 cut(s)	486
XspI	CTAG	7 cut(s)	191, 204, 465, 591, 662, 726, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.