Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004603

Physical Location & Seq

Genomic Coordinates Reverse (-)

16391731 .. 16395103

Gene Structure 3373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00013320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCGGATCTCAGCCCCAGGTCTGAGATCTCATTCTTGCAGACGTTCTTGTGCAGTGCCTTCGCTGCTTGCTTCGCTGAGTTCTGTACCATTCCATTGGACACCGCTAAAGTTAGGCTCCAGCTCCAAAAGAAAGCAGTTGTAGGGGATGCAGCTGTTGCACCTAAATATAGGGGCTTGTTGGGTACTATGGCTACCATTGCTAGGGAAGAAGGTTTAGCAGCACTTTGGAATGGTATAATTCCAGGATTACAACGACAATGCATCTATGGAGGCTTAAGAATTGGGTTATATGATCCTGTCAAACTTTTCCTTGTTGGCAGTGCTTTTGTTGGAGATATTCCTATATACCATAAAGTGCTTGCTGCACTATTGACTGGTGCTTTGGCTATCGTAGTGGCTAATCCAACAGACCTTGTAAAGGTTCGACTCCAAGCTGAAGGAAAATTGCCAGCCGGAGTTCCTAGGCGTTACTCTGGAGCTAAAGATGCTTATTTCACTATAGTGAGGCAGGAAGGTTTAGGAGCTCTGTGGACTGGGCTGGGACCAAATGTAGCACGAAATGCTATTATAAATGCTGCTGAGCTAGCCAGTTATGATCAAGTGAAGGAGACAGTTTTGAAAATTCCAGGGTTCACTGACAATATTTTCACTCATCTCCTAGCTGGTTTGGGTGCTGGTTTCTTTGCAGTTTCTATTGGCTCTCCTGTTGATGTGGTGAAATCTAGAATGATGGGAGATCCAACTTACAAAAACACCATTGATTGCTTCGTCAAAACTTTGAAGTATGAGGGGTTTTGGGCCTTCTATAAAGGGTTTCTTCCAAACTTTGGTCGGCTAGGATCTTGGAATGTGCTTATGTTTCTAATGCTAGAGCAAGCGAAAAATGTCTTCAGGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0006950 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009628 GO:0012505 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:1902600 GO:1903825 GO:1905039 GO:1990542 GO:1990845

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

300

Amino Acids

32.55

Weight (kDa)

9.31

Isoelectric Point (pI)

30.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	9 - 107	6.3e-20	Mitochondrial carrier protein
Mito_carr	PF00153	114 - 207	7e-21	Mitochondrial carrier protein
Mito_carr	PF00153	214 - 298	2.3e-20	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58970 AT5G58970
fragaria_vesca	FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720
malus_domestica	MD03G1078200.v1.1 MD11G1082900.v1.1
prunus_persica	Prupe.6G063200_v2.0.a1 Prupe.6G063200_v2.0.a1 Prupe.6G063200_v2.0.a1
pyrus_communis	pycom03g06250 pycom11g07100
rosa_chinensis	RchiOBHm_Chr1g0328771 RchiOBHm_Chr5g0067991
rosa_laevigata	RLG00000035950
rosa_multiflora	Rmu_sc0000435.1_g000035
rosa_roxburghii	Rroxscaffold_1G00012610 Rroxscaffold_1G00013320 Rroxscaffold_2G00133940
rosa_rugosa	Rorug05G0387100 Rorug05G0387100
rosa_samantha	Rh5AG446000 Rh5BG463500 Rh5CG485400 Rh5DG477500
rosa_wichuraiana	Rw5G041650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	572
AccB7I	CCANNNNNTGG	1 cut(s)	830
AciI	CCGC	2 cut(s)	5, 105
AclWI	GGATC	4 cut(s)	15, 290, 734, 850
AcsI	RAATTY	1 cut(s)	624
AcuI	CTGAAG	2 cut(s)	459, 877
AfaI	GTAC	2 cut(s)	88, 187
AfiI	CCNNNNNNNGG	3 cut(s)	204, 421, 830
AflII	CTTAAG	1 cut(s)	277
AgsI	TTSAA	2 cut(s)	622, 784
AjnI	CCWGG	3 cut(s)	17, 244, 628
AleI	CACNNNNGTG	1 cut(s)	503
AluBI	AGCT	7 cut(s)	124, 155, 437, 482, 527, 586, 665
AluI	AGCT	7 cut(s)	124, 155, 437, 482, 527, 586, 665
Alw21I	GWGCWC	1 cut(s)	529
Alw26I	GTCTC	1 cut(s)	605
AlwI	GGATC	4 cut(s)	15, 290, 734, 850
AoxI	GGCC	1 cut(s)	801
ApeKI	GCWGC	5 cut(s)	65, 152, 221, 365, 578
ApoI	RAATTY	1 cut(s)	624
ArsI	GACNNNNNNTTYG	2 cut(s)	367, 399
AspA2I	CCTAGG	1 cut(s)	464
AspS9I	GGNCC	2 cut(s)	545, 801
AsuHPI	GGTGA	1 cut(s)	730
AsuNHI	GCTAGC	1 cut(s)	586
AvaII	GGWCC	1 cut(s)	545
AvrII	CCTAGG	1 cut(s)	464
BanII	GRGCYC	1 cut(s)	529
BbsI	GAAGAC	1 cut(s)	883
Bbv12I	GWGCWC	1 cut(s)	529
BbvI	GCAGC	5 cut(s)	52, 164, 233, 352, 565
BccI	CCATC	1 cut(s)	727
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	3 cut(s)	19, 246, 630
BclI	TGATCA	1 cut(s)	598
BcoDI	GTCTC	1 cut(s)	605
BfaI	CTAG	7 cut(s)	204, 465, 587, 662, 726, 839, 872
BfmI	CTRYAG	1 cut(s)	501
BfrI	CTTAAG	1 cut(s)	277
BglII	AGATCT	1 cut(s)	27
BisI	GCNGC	5 cut(s)	66, 153, 222, 366, 579
BlnI	CCTAGG	1 cut(s)	464
BlpI	GCTNAGC	1 cut(s)	582
BlsI	GCNGC	5 cut(s)	67, 154, 223, 367, 580
Bme1390I	CCNGG	3 cut(s)	19, 246, 630
Bme18I	GGWCC	1 cut(s)	545
BmgT120I	GGNCC	2 cut(s)	545, 801
BmiI	GGNNCC	2 cut(s)	119, 546
BmrFI	CCNGG	3 cut(s)	19, 246, 630
BmrI	ACTGGG	1 cut(s)	546
BmsI	GCATC	3 cut(s)	139, 273, 478
BmtI	GCTAGC	1 cut(s)	590
BmuI	ACTGGG	1 cut(s)	546
BpiI	GAAGAC	1 cut(s)	883
BpmI	CTGGAG	2 cut(s)	104, 498
Bpu1102I	GCTNAGC	1 cut(s)	582
BsaJI	CCNNGG	3 cut(s)	17, 464, 629
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 421, 830
Bse1I	ACTGG	3 cut(s)	382, 541, 591
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	3 cut(s)	19, 246, 630
BseDI	CCNNGG	3 cut(s)	17, 464, 629
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	3 cut(s)	204, 421, 830
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	4 cut(s)	15, 25, 69, 573
BseNI	ACTGG	3 cut(s)	382, 541, 591
BseXI	GCAGC	5 cut(s)	52, 164, 233, 352, 565
BseYI	CCCAGC	1 cut(s)	541
BsgI	GTGCAG	2 cut(s)	73, 351
BshFI	GGCC	1 cut(s)	803
BsiHKAI	GWGCWC	1 cut(s)	529
BsiSI	CCGG	1 cut(s)	456
BslFI	GGGAC	1 cut(s)	558
BslI	CCNNNNNNNGG	3 cut(s)	204, 421, 830
BsmAI	GTCTC	1 cut(s)	605
BsmFI	GGGAC	1 cut(s)	558
BsnI	GGCC	1 cut(s)	803
Bsp1286I	GDGCHC	1 cut(s)	529
Bsp143I	GATC	6 cut(s)	7, 27, 295, 598, 739, 842
Bsp1720I	GCTNAGC	1 cut(s)	582
BspACI	CCGC	2 cut(s)	5, 105
BspANI	GGCC	1 cut(s)	803
BspCNI	CTCAG	4 cut(s)	16, 24, 70, 574
BspLI	GGNNCC	2 cut(s)	119, 546
BspOI	GCTAGC	1 cut(s)	590
BspPI	GGATC	4 cut(s)	15, 290, 734, 850
BspTI	CTTAAG	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	3 cut(s)	382, 541, 591
BssECI	CCNNGG	3 cut(s)	17, 464, 629
BssMI	GATC	6 cut(s)	7, 27, 295, 598, 739, 842
BssT1I	CCWWGG	1 cut(s)	464
Bst2UI	CCWGG	3 cut(s)	19, 246, 630
Bst4CI	ACNGT	1 cut(s)	616
BstAFI	CTTAAG	1 cut(s)	277
BstAPI	GCANNNNNTGC	2 cut(s)	158, 563
BstC8I	GCNNGC	5 cut(s)	70, 363, 453, 588, 879
BstDEI	CTNAG	4 cut(s)	11, 24, 78, 582
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	6 cut(s)	10, 30, 298, 601, 742, 845
BstMAI	GTCTC	1 cut(s)	605
BstMBI	GATC	6 cut(s)	7, 27, 295, 598, 739, 842
BstMWI	GCNNNNNNNGC	7 cut(s)	65, 74, 158, 200, 488, 563, 587
BstNI	CCWGG	3 cut(s)	19, 246, 630
BstSCI	CCNGG	3 cut(s)	17, 244, 628
BstSFI	CTRYAG	1 cut(s)	501
BstV1I	GCAGC	5 cut(s)	52, 164, 233, 352, 565
BstV2I	GAAGAC	1 cut(s)	883
BstX2I	RGATCY	4 cut(s)	7, 27, 739, 842
BstXI	CCANNNNNNTGG	1 cut(s)	97
BstYI	RGATCY	4 cut(s)	7, 27, 739, 842
BsuRI	GGCC	1 cut(s)	803
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	2 cut(s)	61, 328
BtsIMutI	CAGTG	3 cut(s)	61, 328, 636
Cac8I	GCNNGC	5 cut(s)	70, 363, 453, 588, 879
Cfr13I	GGNCC	2 cut(s)	545, 801
Csp6I	GTAC	2 cut(s)	87, 186
CviQI	GTAC	2 cut(s)	87, 186
DdeI	CTNAG	4 cut(s)	11, 24, 78, 582
DpnI	GATC	6 cut(s)	9, 29, 297, 600, 741, 844
DpnII	GATC	6 cut(s)	7, 27, 295, 598, 739, 842
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	527
Eco130I	CCWWGG	1 cut(s)	464
Eco24I	GRGCYC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	545
Eco53kI	GAGCTC	1 cut(s)	527
Eco57I	CTGAAG	2 cut(s)	459, 877
EcoICRI	GAGCTC	1 cut(s)	527
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoRII	CCWGG	3 cut(s)	17, 244, 628
EcoT14I	CCWWGG	1 cut(s)	464
EcoT22I	ATGCAT	1 cut(s)	266
EcoT38I	GRGCYC	1 cut(s)	529
ErhI	CCWWGG	1 cut(s)	464
FalI	AAGNNNNNCTT	2 cut(s)	804, 836
FaqI	GGGAC	1 cut(s)	558
FbaI	TGATCA	1 cut(s)	598
Fnu4HI	GCNGC	5 cut(s)	66, 153, 222, 366, 579
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	529
Fsp4HI	GCNGC	5 cut(s)	66, 153, 222, 366, 579
FspBI	CTAG	7 cut(s)	204, 465, 587, 662, 726, 839, 872
GluI	GCNGC	5 cut(s)	66, 153, 222, 366, 579
GsaI	CCCAGC	1 cut(s)	545
GsuI	CTGGAG	2 cut(s)	104, 498
HaeIII	GGCC	1 cut(s)	803
HapII	CCGG	1 cut(s)	456
HinfI	GANTC	1 cut(s)	429
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	1 cut(s)	730
Hpy166II	GTNNAC	2 cut(s)	534, 636
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	2 cut(s)	477, 726
Hpy8I	GTNNAC	2 cut(s)	534, 636
HpyAV	CCTTC	6 cut(s)	70, 206, 434, 509, 601, 814
HpyCH4III	ACNGT	1 cut(s)	616
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	7 cut(s)	40, 54, 152, 161, 264, 368, 689
HpyF10VI	GCNNNNNNNGC	7 cut(s)	65, 74, 158, 200, 488, 563, 587
HpyF3I	CTNAG	4 cut(s)	11, 24, 78, 582
HpySE526I	ACGT	1 cut(s)	44
Ksp22I	TGATCA	1 cut(s)	598
Kzo9I	GATC	6 cut(s)	7, 27, 295, 598, 739, 842
LmnI	GCTCC	4 cut(s)	123, 129, 479, 524
Lsp1109I	GCAGC	5 cut(s)	52, 164, 233, 352, 565
LweI	GCATC	3 cut(s)	139, 273, 478
MaeI	CTAG	7 cut(s)	204, 465, 587, 662, 726, 839, 872
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	6 cut(s)	9, 29, 297, 600, 741, 844
MboI	GATC	6 cut(s)	7, 27, 295, 598, 739, 842
MboII	GAAGA	3 cut(s)	221, 812, 883
MflI	RGATCY	4 cut(s)	7, 27, 739, 842
MhlI	GDGCHC	1 cut(s)	529
MluCI	AATT	4 cut(s)	240, 282, 446, 624
MlyI	GAGTC	1 cut(s)	423
MmeI	TCCRAC	3 cut(s)	313, 431, 767
MnlI	CCTC	3 cut(s)	266, 501, 784
Mph1103I	ATGCAT	1 cut(s)	266
MseI	TTAA	1 cut(s)	278
MslI	CAYNNNNRTG	1 cut(s)	503
MspA1I	CMGCKG	1 cut(s)	155
MspCI	CTTAAG	1 cut(s)	277
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	3 cut(s)	19, 246, 630
MvaI	CCWGG	3 cut(s)	19, 246, 630
MwoI	GCNNNNNNNGC	7 cut(s)	65, 74, 158, 200, 488, 563, 587
NdeII	GATC	6 cut(s)	7, 27, 295, 598, 739, 842
NheI	GCTAGC	1 cut(s)	586
NlaIV	GGNNCC	2 cut(s)	119, 546
NsiI	ATGCAT	1 cut(s)	266
OliI	CACNNNNGTG	1 cut(s)	503
PflMI	CCANNNNNTGG	1 cut(s)	830
PfoI	TCCNGGA	1 cut(s)	244
PkrI	GCNGC	5 cut(s)	67, 154, 223, 367, 580
PleI	GAGTC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	423
PsiI	TTATAA	1 cut(s)	572
Psp124BI	GAGCTC	1 cut(s)	529
Psp6I	CCWGG	3 cut(s)	17, 244, 628
PspFI	CCCAGC	1 cut(s)	541
PspGI	CCWGG	3 cut(s)	17, 244, 628
PspN4I	GGNNCC	2 cut(s)	119, 546
PspPI	GGNCC	2 cut(s)	545, 801
PsuI	RGATCY	4 cut(s)	7, 27, 739, 842
PvuII	CAGCTG	1 cut(s)	155
RsaI	GTAC	2 cut(s)	88, 187
RsaNI	GTAC	2 cut(s)	87, 186
RseI	CAYNNNNRTG	1 cut(s)	503
SacI	GAGCTC	1 cut(s)	529
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	5 cut(s)	66, 153, 222, 366, 579
Sau3AI	GATC	6 cut(s)	7, 27, 295, 598, 739, 842
Sau96I	GGNCC	2 cut(s)	545, 801
SchI	GAGTC	1 cut(s)	423
ScrFI	CCNGG	3 cut(s)	19, 246, 630
SduI	GDGCHC	1 cut(s)	529
SfaNI	GCATC	3 cut(s)	139, 273, 478
SfcI	CTRYAG	1 cut(s)	501
SinI	GGWCC	1 cut(s)	545
SmiMI	CAYNNNNRTG	1 cut(s)	503
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	4 cut(s)	240, 282, 446, 624
SsiI	CCGC	2 cut(s)	5, 105
SspI	AATATT	1 cut(s)	646
SspMI	CTAG	7 cut(s)	204, 465, 587, 662, 726, 839, 872
SstI	GAGCTC	1 cut(s)	529
StyD4I	CCNGG	3 cut(s)	17, 244, 628
StyI	CCWWGG	1 cut(s)	464
TaaI	ACNGT	1 cut(s)	616
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	1 cut(s)	427
TasI	AATT	4 cut(s)	240, 282, 446, 624
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TscAI	CASTG	3 cut(s)	61, 328, 643
TseI	GCWGC	5 cut(s)	65, 152, 221, 365, 578
TspRI	CASTG	3 cut(s)	61, 328, 643
Van91I	CCANNNNNTGG	1 cut(s)	830
Vha464I	CTTAAG	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	545
XagI	CCTNNNNNAGG	1 cut(s)	419
XapI	RAATTY	1 cut(s)	624
XbaI	TCTAGA	1 cut(s)	725
XmaJI	CCTAGG	1 cut(s)	464
XspI	CTAG	7 cut(s)	204, 465, 587, 662, 726, 839, 872
Zsp2I	ATGCAT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.