Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004603

Physical Location & Seq

Genomic Coordinates Reverse (-)

7033127 .. 7036233

Gene Structure 3107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1082900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCTGATCTCAGCCCCAGGTCTGAGATCTCCTTCTTGCAAACTTTCCTCTGCAGTGCTTTCGCTGCCTGCTTCGCTGAGTTTTGTACCATACCTTTAGACACTGCTAAAGTCAGGCTCCAGCTACAAAAGAAAGCAGTCCCGGGGGATGGAGCTGGCACACCAAAGTATAGGGGCCTATTGGGTACTATGGCTACAATCGCTAGGGAAGAAGGCTTAGCAGCACTTTGGAATGGCATAATTCCAGGATTACAGCGCCAATGTGTTTACGGAGGTTTGAGAATTGGATTATATGATCCTGTCAAAATTTTCCTTGTTGGCAGTGCTTTTATTGGAGATTTTCCTCTATTCCACAAAATACTTGCAGCTTTATTGACTGGTGCTCTGGCAATCATAGTGGCTAATCCAACCGACCTTGTGAAGGTTCGACTTCAAGCTGAAGGAAAATTACCAGCTGGAGTTCCTAAGCGATATACTGGATCCTTAGATGCTTATTCCACTATAGTGAGACAGGAAGGATTAGGGGCCCTCTGGACTGGGCTGGGGCCAAATGTAGCACGGAATGCTATTATAAATGCTGCTGAACTAGCCAGTTATGATCAAGTGAAGGAGACAATTTTGAAAATTCCAGGGTCCACAGACAATATTTTAACTCATCTCCTAGCTGGTCTGGGTGCCGGCTTCTTTGCAGTTTCTATTGGCTCTCCTGTTGACGTGGTGAAATCTCGAATGATGGGAGATTCAACTTACAAAAACACCTTTGATTGCTTTGTCAAAACTTTGAAGTACGAGGGATTTTTGGCCTTCTATAAAGGGTTCCTCCCAAACTTCGGTCGGCTAGGATCTTGGAATGTGGTTATGTTTCTAATGCTAGAGCAAGCGAAGAACGTTTTCCGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0006950 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009628 GO:0012505 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:1902600 GO:1903825 GO:1905039 GO:1990542 GO:1990845

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

301

Amino Acids

32.35

Weight (kDa)

9.24

Isoelectric Point (pI)

33.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	9 - 107	3e-20	Mitochondrial carrier protein
Mito_carr	PF00153	115 - 208	9.4e-22	Mitochondrial carrier protein
Mito_carr	PF00153	214 - 298	2.4e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58970 AT5G58970
fragaria_vesca	FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720
malus_domestica	MD03G1078200.v1.1 MD11G1082900.v1.1
prunus_persica	Prupe.6G063200_v2.0.a1 Prupe.6G063200_v2.0.a1 Prupe.6G063200_v2.0.a1
pyrus_communis	pycom03g06250 pycom11g07100
rosa_chinensis	RchiOBHm_Chr1g0328771 RchiOBHm_Chr5g0067991
rosa_laevigata	RLG00000035950
rosa_multiflora	Rmu_sc0000435.1_g000035
rosa_roxburghii	Rroxscaffold_1G00012610 Rroxscaffold_1G00013320 Rroxscaffold_2G00133940
rosa_rugosa	Rorug05G0387100 Rorug05G0387100
rosa_samantha	Rh5AG446000 Rh5BG463500 Rh5CG485400 Rh5DG477500
rosa_wichuraiana	Rw5G041650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	572
AccB1I	GGYRCC	1 cut(s)	674
AclI	AACGTT	1 cut(s)	888
AclWI	GGATC	4 cut(s)	290, 474, 487, 850
AcsI	RAATTY	2 cut(s)	306, 624
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	3 cut(s)	88, 187, 788
AfiI	CCNNNNNNNGG	3 cut(s)	149, 421, 830
AgsI	TTSAA	4 cut(s)	434, 622, 744, 784
AjiI	CACGTC	1 cut(s)	715
AjnI	CCWGG	3 cut(s)	17, 244, 628
AleI	CACNNNNGTG	1 cut(s)	503
AluBI	AGCT	6 cut(s)	124, 155, 368, 437, 455, 665
AluI	AGCT	6 cut(s)	124, 155, 368, 437, 455, 665
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	2 cut(s)	502, 605
AlwI	GGATC	4 cut(s)	290, 474, 487, 850
Ama87I	CYCGRG	1 cut(s)	142
AoxI	GGCC	4 cut(s)	175, 525, 545, 801
ApaI	GGGCCC	1 cut(s)	529
ApeKI	GCWGC	4 cut(s)	65, 221, 365, 578
ApoI	RAATTY	2 cut(s)	306, 624
Asp700I	GAANNNNTTC	1 cut(s)	890
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	5 cut(s)	175, 525, 526, 545, 633
AsuC2I	CCSGG	3 cut(s)	143, 144, 896
AsuHPI	GGTGA	1 cut(s)	730
AvaI	CYCGRG	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	633
BaeGI	GKGCMC	1 cut(s)	529
BamHI	GGATCC	1 cut(s)	479
BanI	GGYRCC	1 cut(s)	674
BanII	GRGCYC	1 cut(s)	529
BarI	GAAGNNNNNNTAC	2 cut(s)	432, 464
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	4 cut(s)	52, 233, 377, 565
BccI	CCATC	2 cut(s)	143, 727
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	3 cut(s)	19, 246, 630
BclI	TGATCA	1 cut(s)	598
BcnI	CCSGG	3 cut(s)	143, 144, 896
BcoDI	GTCTC	2 cut(s)	502, 605
BfaI	CTAG	5 cut(s)	204, 587, 662, 839, 872
BfmI	CTRYAG	2 cut(s)	52, 501
BfoI	RGCGCY	1 cut(s)	259
BglII	AGATCT	1 cut(s)	27
BisI	GCNGC	4 cut(s)	66, 222, 366, 579
BlpI	GCTNAGC	1 cut(s)	217
BlsI	GCNGC	4 cut(s)	67, 223, 367, 580
Bme1390I	CCNGG	6 cut(s)	19, 143, 144, 246, 630, 896
Bme18I	GGWCC	1 cut(s)	633
BmeT110I	CYCGRG	1 cut(s)	142
BmgBI	CACGTC	1 cut(s)	715
BmgT120I	GGNCC	5 cut(s)	175, 525, 526, 545, 633
BmiI	GGNNCC	9 cut(s)	119, 176, 481, 526, 527, 546, 634, 676, 818
BmrFI	CCNGG	6 cut(s)	19, 143, 144, 246, 630, 896
BmrI	ACTGGG	1 cut(s)	546
BmsI	GCATC	1 cut(s)	478
BmuI	ACTGGG	1 cut(s)	546
BpmI	CTGGAG	2 cut(s)	104, 477
Bpu10I	CCTNAGC	1 cut(s)	465
Bpu1102I	GCTNAGC	1 cut(s)	217
BpuMI	CCSGG	3 cut(s)	143, 144, 896
BsaJI	CCNNGG	4 cut(s)	17, 142, 143, 629
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 421, 830
Bse118I	RCCGGY	1 cut(s)	677
Bse1I	ACTGG	4 cut(s)	382, 481, 541, 591
BseBI	CCWGG	3 cut(s)	19, 246, 630
BseDI	CCNNGG	4 cut(s)	17, 142, 143, 629
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	3 cut(s)	149, 421, 830
BseMII	CTCAG	3 cut(s)	15, 25, 69
BseNI	ACTGG	4 cut(s)	382, 481, 541, 591
BseSI	GKGCMC	1 cut(s)	529
BseXI	GCAGC	4 cut(s)	52, 233, 377, 565
BseYI	CCCAGC	1 cut(s)	541
Bsh1285I	CGRYCG	1 cut(s)	835
BshFI	GGCC	4 cut(s)	177, 527, 547, 803
BshNI	GGYRCC	1 cut(s)	674
BsiEI	CGRYCG	1 cut(s)	835
BsiHKAI	GWGCWC	1 cut(s)	385
BsiHKCI	CYCGRG	1 cut(s)	142
BsiSI	CCGG	3 cut(s)	143, 678, 895
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	3 cut(s)	149, 421, 830
BsmAI	GTCTC	2 cut(s)	502, 605
BsmFI	GGGAC	1 cut(s)	125
BsmI	GAATGC	1 cut(s)	568
BsnI	GGCC	4 cut(s)	177, 527, 547, 803
BsoBI	CYCGRG	1 cut(s)	142
Bsp120I	GGGCCC	1 cut(s)	525
Bsp1286I	GDGCHC	2 cut(s)	385, 529
Bsp143I	GATC	6 cut(s)	7, 27, 295, 479, 598, 842
Bsp1720I	GCTNAGC	1 cut(s)	217
BspANI	GGCC	4 cut(s)	177, 527, 547, 803
BspCNI	CTCAG	3 cut(s)	16, 24, 70
BspLI	GGNNCC	9 cut(s)	119, 176, 481, 526, 527, 546, 634, 676, 818
BspMAI	CTGCAG	1 cut(s)	56
BspPI	GGATC	4 cut(s)	290, 474, 487, 850
BspT107I	GGYRCC	1 cut(s)	674
BsrFI	RCCGGY	1 cut(s)	677
BsrI	ACTGG	4 cut(s)	382, 481, 541, 591
BssAI	RCCGGY	1 cut(s)	677
BssECI	CCNNGG	4 cut(s)	17, 142, 143, 629
BssMI	GATC	6 cut(s)	7, 27, 295, 479, 598, 842
Bst2UI	CCWGG	3 cut(s)	19, 246, 630
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstC8I	GCNNGC	4 cut(s)	70, 157, 679, 879
BstDEI	CTNAG	6 cut(s)	11, 24, 78, 217, 465, 484
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstF5I	GGATG	1 cut(s)	154
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	6 cut(s)	10, 30, 298, 482, 601, 845
BstMAI	GTCTC	2 cut(s)	502, 605
BstMBI	GATC	6 cut(s)	7, 27, 295, 479, 598, 842
BstMCI	CGRYCG	1 cut(s)	835
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 74, 200, 563, 587
BstNI	CCWGG	3 cut(s)	19, 246, 630
BstSCI	CCNGG	6 cut(s)	17, 141, 142, 244, 628, 894
BstSFI	CTRYAG	2 cut(s)	52, 501
BstSLI	GKGCMC	1 cut(s)	529
BstV1I	GCAGC	4 cut(s)	52, 233, 377, 565
BstX2I	RGATCY	3 cut(s)	27, 479, 842
BstYI	RGATCY	3 cut(s)	27, 479, 842
BsuRI	GGCC	4 cut(s)	177, 527, 547, 803
BtrI	CACGTC	1 cut(s)	715
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	3 cut(s)	61, 102, 328
BtsIMutI	CAGTG	3 cut(s)	61, 102, 328
Cac8I	GCNNGC	4 cut(s)	70, 157, 679, 879
CfoI	GCGC	1 cut(s)	258
Cfr10I	RCCGGY	1 cut(s)	677
Cfr13I	GGNCC	5 cut(s)	175, 525, 526, 545, 633
Cfr9I	CCCGGG	1 cut(s)	142
Csp6I	GTAC	3 cut(s)	87, 186, 787
CspCI	CAANNNNNGTGG	2 cut(s)	378, 413
CviQI	GTAC	3 cut(s)	87, 186, 787
DdeI	CTNAG	6 cut(s)	11, 24, 78, 217, 465, 484
DpnI	GATC	6 cut(s)	9, 29, 297, 481, 600, 844
DpnII	GATC	6 cut(s)	7, 27, 295, 479, 598, 842
Eco24I	GRGCYC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	633
Eco57I	CTGAAG	1 cut(s)	459
Eco88I	CYCGRG	1 cut(s)	142
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoO109I	RGGNCCY	3 cut(s)	175, 525, 526
EcoRII	CCWGG	3 cut(s)	17, 244, 628
EcoT38I	GRGCYC	1 cut(s)	529
FaqI	GGGAC	1 cut(s)	125
FbaI	TGATCA	1 cut(s)	598
Fnu4HI	GCNGC	4 cut(s)	66, 222, 366, 579
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	529
Fsp4HI	GCNGC	4 cut(s)	66, 222, 366, 579
FspBI	CTAG	5 cut(s)	204, 587, 662, 839, 872
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	4 cut(s)	66, 222, 366, 579
GsaI	CCCAGC	1 cut(s)	545
GsuI	CTGGAG	2 cut(s)	104, 477
HaeII	RGCGCY	1 cut(s)	259
HaeIII	GGCC	4 cut(s)	177, 527, 547, 803
HapII	CCGG	3 cut(s)	143, 678, 895
HhaI	GCGC	1 cut(s)	258
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HincII	GTYRAC	1 cut(s)	712
HindII	GTYRAC	1 cut(s)	712
HinfI	GANTC	1 cut(s)	740
HpaII	CCGG	3 cut(s)	143, 678, 895
HphI	GGTGA	1 cut(s)	730
Hpy166II	GTNNAC	3 cut(s)	268, 636, 712
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	2 cut(s)	532, 726
Hpy8I	GTNNAC	3 cut(s)	268, 636, 712
HpyAV	CCTTC	7 cut(s)	43, 206, 415, 434, 509, 601, 814
HpyCH4IV	ACGT	2 cut(s)	714, 888
HpyCH4V	TGCA	4 cut(s)	40, 54, 365, 689
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 74, 200, 563, 587
HpyF3I	CTNAG	6 cut(s)	11, 24, 78, 217, 465, 484
HpySE526I	ACGT	2 cut(s)	714, 888
HspAI	GCGC	1 cut(s)	256
KroI	GCCGGC	1 cut(s)	677
KroNI	GCCGGC	1 cut(s)	679
Ksp22I	TGATCA	1 cut(s)	598
Kzo9I	GATC	6 cut(s)	7, 27, 295, 479, 598, 842
LmnI	GCTCC	2 cut(s)	123, 152
Lsp1109I	GCAGC	4 cut(s)	52, 233, 377, 565
LweI	GCATC	1 cut(s)	478
MaeI	CTAG	5 cut(s)	204, 587, 662, 839, 872
MaeII	ACGT	2 cut(s)	714, 888
MalI	GATC	6 cut(s)	9, 29, 297, 481, 600, 844
MboI	GATC	6 cut(s)	7, 27, 295, 479, 598, 842
MboII	GAAGA	2 cut(s)	221, 895
MflI	RGATCY	3 cut(s)	27, 479, 842
MhlI	GDGCHC	2 cut(s)	385, 529
MluCI	AATT	6 cut(s)	240, 282, 306, 446, 615, 624
MmeI	TCCRAC	1 cut(s)	431
MnlI	CCTC	6 cut(s)	59, 266, 354, 539, 784, 830
MroNI	GCCGGC	1 cut(s)	677
MroXI	GAANNNNTTC	1 cut(s)	890
MseI	TTAA	1 cut(s)	650
MslI	CAYNNNNRTG	1 cut(s)	503
MspA1I	CMGCKG	1 cut(s)	455
MspI	CCGG	3 cut(s)	143, 678, 895
MspR9I	CCNGG	6 cut(s)	19, 143, 144, 246, 630, 896
Mva1269I	GAATGC	1 cut(s)	568
MvaI	CCWGG	3 cut(s)	19, 246, 630
MwoI	GCNNNNNNNGC	5 cut(s)	65, 74, 200, 563, 587
NaeI	GCCGGC	1 cut(s)	679
NciI	CCSGG	3 cut(s)	143, 144, 896
NdeII	GATC	6 cut(s)	7, 27, 295, 479, 598, 842
NgoMIV	GCCGGC	1 cut(s)	677
NlaIV	GGNNCC	9 cut(s)	119, 176, 481, 526, 527, 546, 634, 676, 818
OliI	CACNNNNGTG	1 cut(s)	503
PctI	GAATGC	1 cut(s)	568
PdiI	GCCGGC	1 cut(s)	679
PdmI	GAANNNNTTC	1 cut(s)	890
PfeI	GAWTC	1 cut(s)	740
PfoI	TCCNGGA	1 cut(s)	244
PkrI	GCNGC	4 cut(s)	67, 223, 367, 580
PsiI	TTATAA	1 cut(s)	572
Psp1406I	AACGTT	1 cut(s)	888
Psp6I	CCWGG	3 cut(s)	17, 244, 628
PspFI	CCCAGC	1 cut(s)	541
PspGI	CCWGG	3 cut(s)	17, 244, 628
PspN4I	GGNNCC	9 cut(s)	119, 176, 481, 526, 527, 546, 634, 676, 818
PspOMI	GGGCCC	1 cut(s)	525
PspPI	GGNCC	5 cut(s)	175, 525, 526, 545, 633
PstI	CTGCAG	1 cut(s)	56
PsuI	RGATCY	3 cut(s)	27, 479, 842
PvuII	CAGCTG	1 cut(s)	455
RsaI	GTAC	3 cut(s)	88, 187, 788
RsaNI	GTAC	3 cut(s)	87, 186, 787
RseI	CAYNNNNRTG	1 cut(s)	503
SaqAI	TTAA	1 cut(s)	650
SatI	GCNGC	4 cut(s)	66, 222, 366, 579
Sau3AI	GATC	6 cut(s)	7, 27, 295, 479, 598, 842
Sau96I	GGNCC	5 cut(s)	175, 525, 526, 545, 633
ScrFI	CCNGG	6 cut(s)	19, 143, 144, 246, 630, 896
SduI	GDGCHC	2 cut(s)	385, 529
SfaNI	GCATC	1 cut(s)	478
SfcI	CTRYAG	2 cut(s)	52, 501
SinI	GGWCC	1 cut(s)	633
SmaI	CCCGGG	1 cut(s)	144
SmiMI	CAYNNNNRTG	1 cut(s)	503
Sse9I	AATT	6 cut(s)	240, 282, 306, 446, 615, 624
SspI	AATATT	1 cut(s)	646
SspMI	CTAG	5 cut(s)	204, 587, 662, 839, 872
StyD4I	CCNGG	6 cut(s)	17, 141, 142, 244, 628, 894
TaiI	ACGT	2 cut(s)	717, 891
TaqI	TCGA	2 cut(s)	427, 727
TaqII	GACCGA	1 cut(s)	821
TasI	AATT	6 cut(s)	240, 282, 306, 446, 615, 624
TfiI	GAWTC	1 cut(s)	740
Tru1I	TTAA	1 cut(s)	650
Tru9I	TTAA	1 cut(s)	650
TscAI	CASTG	3 cut(s)	61, 109, 328
TseI	GCWGC	4 cut(s)	65, 221, 365, 578
TspGWI	ACGGA	2 cut(s)	285, 574
TspMI	CCCGGG	1 cut(s)	142
TspRI	CASTG	3 cut(s)	61, 109, 328
VpaK11BI	GGWCC	1 cut(s)	633
XagI	CCTNNNNNAGG	1 cut(s)	419
XapI	RAATTY	2 cut(s)	306, 624
XmaI	CCCGGG	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	890
XspI	CTAG	5 cut(s)	204, 587, 662, 839, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.