Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004603

Physical Location & Seq

Genomic Coordinates Reverse (-)

5384004 .. 5386763

Gene Structure 2760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g07100.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCAGATCTCAGCACCAGGTCTGAGATCTCCTTCTTGCAAACTTTCCTCTGCAGTGCTTTTGCTGCCTGCTTCGCTGAGTTTTGTACCATTCCTTTAGACACCGCTAAAGTCAGGCTCCAGCTACAAAAGAAAGCGGTCCCAGGGGATGGAGCTGGCACACCAAACTATAGAGGCCTTTTGGGTACTATGGCTACAATCGCTAGGGAAGAAGGCTTAGCAGCACTTTGGAATGGCATAATTCCAGGATTACAGCGCCAGTGTATTTACGGTGGCTTGAGAATTGGATTATATGATCCTGTCAAAATTTTCCTTGTTGGCAGTGCTTTTATTGGAGATTTTCCTATATTCCACAAAATACTTGCAGCTCTATTGACTGGTGCTCTGGCAATCATAGTGGCTAATCCAACTGACCTTGTGAAGGTTCGACTTCAAGCTGAAGGAAAATTACCAGCTGGAGTTCCTAAGCGATATACTGGATCCTTACATGCTTATTCTACTATAGTTAGACAGGAAGGATTAGGGGCCCTTTGGACTGGGCTAGGGCCAAATGTAGCACGGAATGCTATTATAAATGCTGCTGAACTAGCCAGTTATGATCAAGTGAAGGAGACAATTTTGAAAATTCCAGGGTCCACAGACAATATTTTAACTCATCTCCTAGCTGGTCTGGGTGCCGGCTTCTTTGCAGTTTCTATTGGCTCTCCTGTTGATGTGGTGAAATCTCGAATGATGGGAGATTCAACTTACAAAAACACCTTTGATTGCTTTGTCAAAACTTTGAAGTACGAGGGATTTTTGGCCTTCTATAAGGGGTTCCTCCCAAACTTCAGTCGGCTAGGATCTTGGAATGTGGTTATGTTTCTAGTGCTAGAGCAAGCGAAGAACGTTTTCCGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0006950 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009628 GO:0012505 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:1902600 GO:1903825 GO:1905039 GO:1990542 GO:1990845

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

301

Amino Acids

32.38

Weight (kDa)

9.25

Isoelectric Point (pI)

33.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58970 AT5G58970
fragaria_vesca	FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720
malus_domestica	MD03G1078200.v1.1 MD11G1082900.v1.1
prunus_persica	Prupe.6G063200_v2.0.a1 Prupe.6G063200_v2.0.a1 Prupe.6G063200_v2.0.a1
pyrus_communis	pycom03g06250 pycom11g07100
rosa_chinensis	RchiOBHm_Chr1g0328771 RchiOBHm_Chr5g0067991
rosa_laevigata	RLG00000035950
rosa_multiflora	Rmu_sc0000435.1_g000035
rosa_roxburghii	Rroxscaffold_1G00012610 Rroxscaffold_1G00013320 Rroxscaffold_2G00133940
rosa_rugosa	Rorug05G0387100 Rorug05G0387100
rosa_samantha	Rh5AG446000 Rh5BG463500 Rh5CG485400 Rh5DG477500
rosa_wichuraiana	Rw5G041650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	572
AccB1I	GGYRCC	1 cut(s)	674
AccB7I	CCANNNNNTGG	1 cut(s)	149
AciI	CCGC	2 cut(s)	105, 137
AclI	AACGTT	1 cut(s)	888
AclWI	GGATC	4 cut(s)	290, 474, 487, 850
AcsI	RAATTY	2 cut(s)	306, 624
AcuI	CTGAAG	2 cut(s)	459, 814
AfaI	GTAC	3 cut(s)	88, 187, 788
AfiI	CCNNNNNNNGG	2 cut(s)	149, 421
AgsI	TTSAA	4 cut(s)	434, 622, 744, 784
AjnI	CCWGG	4 cut(s)	17, 142, 244, 628
AluBI	AGCT	6 cut(s)	124, 155, 368, 437, 455, 665
AluI	AGCT	6 cut(s)	124, 155, 368, 437, 455, 665
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	1 cut(s)	605
AlwI	GGATC	4 cut(s)	290, 474, 487, 850
AoxI	GGCC	4 cut(s)	175, 525, 545, 801
ApaI	GGGCCC	1 cut(s)	529
ApeKI	GCWGC	4 cut(s)	65, 221, 365, 578
ApoI	RAATTY	2 cut(s)	306, 624
Asp700I	GAANNNNTTC	1 cut(s)	890
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	5 cut(s)	139, 525, 526, 545, 633
AsuC2I	CCSGG	1 cut(s)	896
AsuHPI	GGTGA	1 cut(s)	730
AvaII	GGWCC	2 cut(s)	139, 633
BaeGI	GKGCMC	1 cut(s)	529
BamHI	GGATCC	1 cut(s)	479
BanI	GGYRCC	1 cut(s)	674
BanII	GRGCYC	1 cut(s)	529
BarI	GAAGNNNNNNTAC	2 cut(s)	432, 464
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	4 cut(s)	52, 233, 377, 565
BccI	CCATC	2 cut(s)	143, 727
BciT130I	CCWGG	4 cut(s)	19, 144, 246, 630
BclI	TGATCA	1 cut(s)	598
BcnI	CCSGG	1 cut(s)	896
BcoDI	GTCTC	1 cut(s)	605
BfaI	CTAG	7 cut(s)	204, 542, 587, 662, 839, 866, 872
BfmI	CTRYAG	3 cut(s)	52, 169, 501
BfoI	RGCGCY	1 cut(s)	259
BglII	AGATCT	2 cut(s)	7, 27
BisI	GCNGC	4 cut(s)	66, 222, 366, 579
BlpI	GCTNAGC	1 cut(s)	217
BlsI	GCNGC	4 cut(s)	67, 223, 367, 580
Bme1390I	CCNGG	5 cut(s)	19, 144, 246, 630, 896
Bme18I	GGWCC	2 cut(s)	139, 633
BmgT120I	GGNCC	5 cut(s)	139, 525, 526, 545, 633
BmiI	GGNNCC	8 cut(s)	119, 141, 481, 526, 527, 634, 676, 818
BmrFI	CCNGG	5 cut(s)	19, 144, 246, 630, 896
BmrI	ACTGGG	1 cut(s)	546
BmuI	ACTGGG	1 cut(s)	546
BpmI	CTGGAG	2 cut(s)	104, 477
Bpu10I	CCTNAGC	1 cut(s)	465
Bpu1102I	GCTNAGC	1 cut(s)	217
BpuEI	CTTGAG	1 cut(s)	298
BpuMI	CCSGG	1 cut(s)	896
BsaJI	CCNNGG	3 cut(s)	142, 143, 629
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 421
Bse118I	RCCGGY	1 cut(s)	677
Bse1I	ACTGG	5 cut(s)	259, 382, 481, 541, 591
BseBI	CCWGG	4 cut(s)	19, 144, 246, 630
BseDI	CCNNGG	3 cut(s)	142, 143, 629
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	2 cut(s)	149, 421
BseMII	CTCAG	3 cut(s)	15, 25, 69
BseNI	ACTGG	5 cut(s)	259, 382, 481, 541, 591
BseSI	GKGCMC	1 cut(s)	529
BseXI	GCAGC	4 cut(s)	52, 233, 377, 565
BshFI	GGCC	4 cut(s)	177, 527, 547, 803
BshNI	GGYRCC	1 cut(s)	674
BsiHKAI	GWGCWC	1 cut(s)	385
BsiSI	CCGG	2 cut(s)	678, 895
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	2 cut(s)	149, 421
BsmAI	GTCTC	1 cut(s)	605
BsmFI	GGGAC	1 cut(s)	125
BsmI	GAATGC	1 cut(s)	568
BsnI	GGCC	4 cut(s)	177, 527, 547, 803
Bsp120I	GGGCCC	1 cut(s)	525
Bsp1286I	GDGCHC	2 cut(s)	385, 529
Bsp143I	GATC	6 cut(s)	7, 27, 295, 479, 598, 842
Bsp1720I	GCTNAGC	1 cut(s)	217
BspACI	CCGC	2 cut(s)	105, 137
BspANI	GGCC	4 cut(s)	177, 527, 547, 803
BspCNI	CTCAG	3 cut(s)	16, 24, 70
BspLI	GGNNCC	8 cut(s)	119, 141, 481, 526, 527, 634, 676, 818
BspMAI	CTGCAG	1 cut(s)	56
BspPI	GGATC	4 cut(s)	290, 474, 487, 850
BspT107I	GGYRCC	1 cut(s)	674
BsrFI	RCCGGY	1 cut(s)	677
BsrI	ACTGG	5 cut(s)	259, 382, 481, 541, 591
BssAI	RCCGGY	1 cut(s)	677
BssECI	CCNNGG	3 cut(s)	142, 143, 629
BssMI	GATC	6 cut(s)	7, 27, 295, 479, 598, 842
Bst2UI	CCWGG	4 cut(s)	19, 144, 246, 630
Bst4CI	ACNGT	1 cut(s)	272
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstC8I	GCNNGC	4 cut(s)	70, 157, 679, 879
BstDEI	CTNAG	5 cut(s)	11, 24, 78, 217, 465
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstF5I	GGATG	1 cut(s)	154
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	6 cut(s)	10, 30, 298, 482, 601, 845
BstMAI	GTCTC	1 cut(s)	605
BstMBI	GATC	6 cut(s)	7, 27, 295, 479, 598, 842
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 74, 200, 563, 587
BstNI	CCWGG	4 cut(s)	19, 144, 246, 630
BstNSI	RCATGY	1 cut(s)	491
BstSCI	CCNGG	5 cut(s)	17, 142, 244, 628, 894
BstSFI	CTRYAG	3 cut(s)	52, 169, 501
BstSLI	GKGCMC	1 cut(s)	529
BstV1I	GCAGC	4 cut(s)	52, 233, 377, 565
BstX2I	RGATCY	4 cut(s)	7, 27, 479, 842
BstYI	RGATCY	4 cut(s)	7, 27, 479, 842
BsuRI	GGCC	4 cut(s)	177, 527, 547, 803
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	2 cut(s)	61, 328
BtsIMutI	CAGTG	3 cut(s)	61, 266, 328
Cac8I	GCNNGC	4 cut(s)	70, 157, 679, 879
CfoI	GCGC	1 cut(s)	258
Cfr10I	RCCGGY	1 cut(s)	677
Cfr13I	GGNCC	5 cut(s)	139, 525, 526, 545, 633
CsiI	ACCWGGT	1 cut(s)	17
Csp6I	GTAC	3 cut(s)	87, 186, 787
CspCI	CAANNNNNGTGG	2 cut(s)	378, 413
CviAII	CATG	1 cut(s)	488
CviQI	GTAC	3 cut(s)	87, 186, 787
DdeI	CTNAG	5 cut(s)	11, 24, 78, 217, 465
DpnI	GATC	6 cut(s)	9, 29, 297, 481, 600, 844
DpnII	GATC	6 cut(s)	7, 27, 295, 479, 598, 842
Eco147I	AGGCCT	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	529
Eco47I	GGWCC	2 cut(s)	139, 633
Eco57I	CTGAAG	2 cut(s)	459, 814
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoO109I	RGGNCCY	2 cut(s)	525, 526
EcoRII	CCWGG	4 cut(s)	17, 142, 244, 628
EcoT38I	GRGCYC	1 cut(s)	529
FaeI	CATG	1 cut(s)	491
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	1 cut(s)	487
FbaI	TGATCA	1 cut(s)	598
Fnu4HI	GCNGC	4 cut(s)	66, 222, 366, 579
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	529
Fsp4HI	GCNGC	4 cut(s)	66, 222, 366, 579
FspBI	CTAG	7 cut(s)	204, 542, 587, 662, 839, 866, 872
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	4 cut(s)	66, 222, 366, 579
GsuI	CTGGAG	2 cut(s)	104, 477
HaeII	RGCGCY	1 cut(s)	259
HaeIII	GGCC	4 cut(s)	177, 527, 547, 803
HapII	CCGG	2 cut(s)	678, 895
HhaI	GCGC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	491
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HinfI	GANTC	1 cut(s)	740
HpaII	CCGG	2 cut(s)	678, 895
HphI	GGTGA	1 cut(s)	730
Hpy166II	GTNNAC	1 cut(s)	636
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	1 cut(s)	726
Hpy8I	GTNNAC	1 cut(s)	636
HpyAV	CCTTC	7 cut(s)	43, 206, 415, 434, 509, 601, 814
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4IV	ACGT	1 cut(s)	888
HpyCH4V	TGCA	4 cut(s)	40, 54, 365, 689
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 74, 200, 563, 587
HpyF3I	CTNAG	5 cut(s)	11, 24, 78, 217, 465
HpySE526I	ACGT	1 cut(s)	888
Hsp92II	CATG	1 cut(s)	491
HspAI	GCGC	1 cut(s)	256
KroI	GCCGGC	1 cut(s)	677
KroNI	GCCGGC	1 cut(s)	679
Ksp22I	TGATCA	1 cut(s)	598
Kzo9I	GATC	6 cut(s)	7, 27, 295, 479, 598, 842
LmnI	GCTCC	2 cut(s)	123, 152
Lsp1109I	GCAGC	4 cut(s)	52, 233, 377, 565
MabI	ACCWGGT	1 cut(s)	17
MaeI	CTAG	7 cut(s)	204, 542, 587, 662, 839, 866, 872
MaeII	ACGT	1 cut(s)	888
MalI	GATC	6 cut(s)	9, 29, 297, 481, 600, 844
MboI	GATC	6 cut(s)	7, 27, 295, 479, 598, 842
MboII	GAAGA	2 cut(s)	221, 895
MflI	RGATCY	4 cut(s)	7, 27, 479, 842
MhlI	GDGCHC	2 cut(s)	385, 529
MluCI	AATT	6 cut(s)	240, 282, 306, 446, 615, 624
MmeI	TCCRAC	1 cut(s)	431
MnlI	CCTC	4 cut(s)	59, 167, 784, 830
MroNI	GCCGGC	1 cut(s)	677
MroXI	GAANNNNTTC	1 cut(s)	890
MseI	TTAA	1 cut(s)	650
MspA1I	CMGCKG	1 cut(s)	455
MspI	CCGG	2 cut(s)	678, 895
MspR9I	CCNGG	5 cut(s)	19, 144, 246, 630, 896
Mva1269I	GAATGC	1 cut(s)	568
MvaI	CCWGG	4 cut(s)	19, 144, 246, 630
MwoI	GCNNNNNNNGC	5 cut(s)	65, 74, 200, 563, 587
NaeI	GCCGGC	1 cut(s)	679
NciI	CCSGG	1 cut(s)	896
NdeII	GATC	6 cut(s)	7, 27, 295, 479, 598, 842
NgoMIV	GCCGGC	1 cut(s)	677
NlaIII	CATG	1 cut(s)	491
NlaIV	GGNNCC	8 cut(s)	119, 141, 481, 526, 527, 634, 676, 818
NspI	RCATGY	1 cut(s)	491
PasI	CCCWGGG	1 cut(s)	143
PceI	AGGCCT	1 cut(s)	177
PctI	GAATGC	1 cut(s)	568
PdiI	GCCGGC	1 cut(s)	679
PdmI	GAANNNNTTC	1 cut(s)	890
PfeI	GAWTC	1 cut(s)	740
PflMI	CCANNNNNTGG	1 cut(s)	149
PfoI	TCCNGGA	1 cut(s)	244
PkrI	GCNGC	4 cut(s)	67, 223, 367, 580
PsiI	TTATAA	1 cut(s)	572
Psp1406I	AACGTT	1 cut(s)	888
Psp6I	CCWGG	4 cut(s)	17, 142, 244, 628
PspGI	CCWGG	4 cut(s)	17, 142, 244, 628
PspN4I	GGNNCC	8 cut(s)	119, 141, 481, 526, 527, 634, 676, 818
PspOMI	GGGCCC	1 cut(s)	525
PspPI	GGNCC	5 cut(s)	139, 525, 526, 545, 633
PstI	CTGCAG	1 cut(s)	56
PsuI	RGATCY	4 cut(s)	7, 27, 479, 842
PvuII	CAGCTG	1 cut(s)	455
RsaI	GTAC	3 cut(s)	88, 187, 788
RsaNI	GTAC	3 cut(s)	87, 186, 787
SaqAI	TTAA	1 cut(s)	650
SatI	GCNGC	4 cut(s)	66, 222, 366, 579
Sau3AI	GATC	6 cut(s)	7, 27, 295, 479, 598, 842
Sau96I	GGNCC	5 cut(s)	139, 525, 526, 545, 633
ScrFI	CCNGG	5 cut(s)	19, 144, 246, 630, 896
SduI	GDGCHC	2 cut(s)	385, 529
SexAI	ACCWGGT	1 cut(s)	17
SfcI	CTRYAG	3 cut(s)	52, 169, 501
SinI	GGWCC	2 cut(s)	139, 633
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	6 cut(s)	240, 282, 306, 446, 615, 624
SseBI	AGGCCT	1 cut(s)	177
SsiI	CCGC	2 cut(s)	105, 137
SspI	AATATT	1 cut(s)	646
SspMI	CTAG	7 cut(s)	204, 542, 587, 662, 839, 866, 872
StuI	AGGCCT	1 cut(s)	177
StyD4I	CCNGG	5 cut(s)	17, 142, 244, 628, 894
TaaI	ACNGT	1 cut(s)	272
TaiI	ACGT	1 cut(s)	891
TaqI	TCGA	2 cut(s)	427, 727
TasI	AATT	6 cut(s)	240, 282, 306, 446, 615, 624
TfiI	GAWTC	1 cut(s)	740
Tru1I	TTAA	1 cut(s)	650
Tru9I	TTAA	1 cut(s)	650
TscAI	CASTG	3 cut(s)	61, 266, 328
TseI	GCWGC	4 cut(s)	65, 221, 365, 578
TspGWI	ACGGA	1 cut(s)	574
TspRI	CASTG	3 cut(s)	61, 266, 328
Van91I	CCANNNNNTGG	1 cut(s)	149
VpaK11BI	GGWCC	2 cut(s)	139, 633
XagI	CCTNNNNNAGG	1 cut(s)	419
XapI	RAATTY	2 cut(s)	306, 624
XceI	RCATGY	1 cut(s)	491
XmnI	GAANNNNTTC	1 cut(s)	890
XspI	CTAG	7 cut(s)	204, 542, 587, 662, 839, 866, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.