Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004603

Physical Location & Seq

Genomic Coordinates Forward (+)

76629986 .. 76633910

Gene Structure 3925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG446000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCGGATCTCAGCCCCAGGTCTGAGATCTCATTCTTGCAGACGTTCTTCTGCAGTGCCTTCGCTGCTTGCTTCGCTGAGTTCTGTACCATTCCGTTGGACACCGCTAAAGTTAGGCTCCAGCTCCAAAAGAAAGCAGTTGTAGGGGATGCAGCTGTTGCACCTAAATATAGGGGCTTGTTGGGTACTATGGCTACCATTGCTAGGGAAGAAGGTTTAGCAGCACTTTGGAATGGTATAATTCCAGGATTACAACGACAATGCATCTATGGAGGCTTAAGAATTGGGTTATATGATCCTGTCAAACTTTTCCTTGTTGGCAGTGCTTTTGTTGGAGATATTCCTATATACCATAAAGTGCTTGCTGCACTATTGACTGGTGCTCTGGCTATCGTAGTGGCTAATCCAACAGACCTTGTAAAGGTTCGACTCCAAGCTGAAGGAAAATTGCCAGCTGGAGTTCCTAGGCGTTACTCTGGAGCTAAAGATGCTTATTTCACTATAGTGAGGCAGGAAGGTTTAGGAGCTCTGTGGACTGGGCTGGGACCAAATGTAGCACGAAATGCTATTATAAATGCTGCTGAGCTAGCCAGTTATGATCAAGTGAAGGAGACAGTTTTGAAAATTCCAGGGTTCACTGACAATATTTTCACTCATCTCCTAGCTGGTCTGGGTGCTGGTTTCTTTGCAGTTTCTATTGGTTCTCCTGTTGATGTGGTATGCATTCTGAAACCTATTAGCCTTAATAATAAATTTGGTGCTTCTATTTATCATCACAAGGAGGTAATTTGTGTAGCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0006950 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009628 GO:0012505 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:1902600 GO:1903825 GO:1905039 GO:1990542 GO:1990845

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

267

Amino Acids

28.45

Weight (kDa)

9.0

Isoelectric Point (pI)

34.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	9 - 107	8.1e-20	Mitochondrial carrier protein
Mito_carr	PF00153	114 - 207	5.5e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58970 AT5G58970
fragaria_vesca	FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720
malus_domestica	MD03G1078200.v1.1 MD11G1082900.v1.1
prunus_persica	Prupe.6G063200_v2.0.a1 Prupe.6G063200_v2.0.a1 Prupe.6G063200_v2.0.a1
pyrus_communis	pycom03g06250 pycom11g07100
rosa_chinensis	RchiOBHm_Chr1g0328771 RchiOBHm_Chr5g0067991
rosa_laevigata	RLG00000035950
rosa_multiflora	Rmu_sc0000435.1_g000035
rosa_roxburghii	Rroxscaffold_1G00012610 Rroxscaffold_1G00013320 Rroxscaffold_2G00133940
rosa_rugosa	Rorug05G0387100 Rorug05G0387100
rosa_samantha	Rh5AG446000 Rh5BG463500 Rh5CG485400 Rh5DG477500
rosa_wichuraiana	Rw5G041650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	572
AciI	CCGC	2 cut(s)	5, 105
AclWI	GGATC	2 cut(s)	15, 290
AcsI	RAATTY	2 cut(s)	624, 752
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	2 cut(s)	88, 187
AfiI	CCNNNNNNNGG	2 cut(s)	204, 421
AflII	CTTAAG	1 cut(s)	277
AgsI	TTSAA	1 cut(s)	622
AjnI	CCWGG	3 cut(s)	17, 244, 628
AleI	CACNNNNGTG	1 cut(s)	503
AluBI	AGCT	8 cut(s)	124, 155, 437, 455, 482, 527, 586, 665
AluI	AGCT	8 cut(s)	124, 155, 437, 455, 482, 527, 586, 665
Alw21I	GWGCWC	2 cut(s)	385, 529
Alw26I	GTCTC	1 cut(s)	605
AlwI	GGATC	2 cut(s)	15, 290
ApeKI	GCWGC	5 cut(s)	65, 152, 221, 365, 578
ApoI	RAATTY	2 cut(s)	624, 752
AspA2I	CCTAGG	1 cut(s)	464
AspS9I	GGNCC	1 cut(s)	545
AsuNHI	GCTAGC	1 cut(s)	586
AvaII	GGWCC	1 cut(s)	545
AvrII	CCTAGG	1 cut(s)	464
BanII	GRGCYC	1 cut(s)	529
Bbv12I	GWGCWC	2 cut(s)	385, 529
BbvI	GCAGC	5 cut(s)	52, 164, 233, 352, 565
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	3 cut(s)	19, 246, 630
BclI	TGATCA	1 cut(s)	598
BcoDI	GTCTC	1 cut(s)	605
BfaI	CTAG	4 cut(s)	204, 465, 587, 662
BfmI	CTRYAG	2 cut(s)	52, 501
BfrI	CTTAAG	1 cut(s)	277
BglII	AGATCT	1 cut(s)	27
BisI	GCNGC	5 cut(s)	66, 153, 222, 366, 579
BlnI	CCTAGG	1 cut(s)	464
BlpI	GCTNAGC	1 cut(s)	582
BlsI	GCNGC	5 cut(s)	67, 154, 223, 367, 580
Bme1390I	CCNGG	3 cut(s)	19, 246, 630
Bme18I	GGWCC	1 cut(s)	545
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	2 cut(s)	119, 546
BmrFI	CCNGG	3 cut(s)	19, 246, 630
BmrI	ACTGGG	1 cut(s)	546
BmsI	GCATC	3 cut(s)	139, 273, 478
BmtI	GCTAGC	1 cut(s)	590
BmuI	ACTGGG	1 cut(s)	546
BpmI	CTGGAG	3 cut(s)	104, 477, 498
Bpu1102I	GCTNAGC	1 cut(s)	582
BsaJI	CCNNGG	3 cut(s)	17, 464, 629
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 421
Bse1I	ACTGG	3 cut(s)	382, 541, 591
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	3 cut(s)	19, 246, 630
BseDI	CCNNGG	3 cut(s)	17, 464, 629
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	2 cut(s)	204, 421
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	4 cut(s)	15, 25, 69, 573
BseNI	ACTGG	3 cut(s)	382, 541, 591
BseXI	GCAGC	5 cut(s)	52, 164, 233, 352, 565
BseYI	CCCAGC	1 cut(s)	541
BsgI	GTGCAG	1 cut(s)	351
BsiHKAI	GWGCWC	2 cut(s)	385, 529
BslFI	GGGAC	1 cut(s)	558
BslI	CCNNNNNNNGG	2 cut(s)	204, 421
BsmAI	GTCTC	1 cut(s)	605
BsmFI	GGGAC	1 cut(s)	558
BsmI	GAATGC	1 cut(s)	723
Bsp1286I	GDGCHC	2 cut(s)	385, 529
Bsp143I	GATC	4 cut(s)	7, 27, 295, 598
Bsp1720I	GCTNAGC	1 cut(s)	582
BspACI	CCGC	2 cut(s)	5, 105
BspCNI	CTCAG	4 cut(s)	16, 24, 70, 574
BspLI	GGNNCC	2 cut(s)	119, 546
BspMAI	CTGCAG	1 cut(s)	56
BspOI	GCTAGC	1 cut(s)	590
BspPI	GGATC	2 cut(s)	15, 290
BspTI	CTTAAG	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	3 cut(s)	382, 541, 591
BssECI	CCNNGG	3 cut(s)	17, 464, 629
BssMI	GATC	4 cut(s)	7, 27, 295, 598
BssT1I	CCWWGG	1 cut(s)	464
Bst2UI	CCWGG	3 cut(s)	19, 246, 630
Bst4CI	ACNGT	1 cut(s)	616
BstAFI	CTTAAG	1 cut(s)	277
BstAPI	GCANNNNNTGC	2 cut(s)	158, 563
BstC8I	GCNNGC	4 cut(s)	70, 363, 453, 588
BstDEI	CTNAG	4 cut(s)	11, 24, 78, 582
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	4 cut(s)	10, 30, 298, 601
BstMAI	GTCTC	1 cut(s)	605
BstMBI	GATC	4 cut(s)	7, 27, 295, 598
BstMWI	GCNNNNNNNGC	7 cut(s)	65, 74, 158, 200, 488, 563, 587
BstNI	CCWGG	3 cut(s)	19, 246, 630
BstSCI	CCNGG	3 cut(s)	17, 244, 628
BstSFI	CTRYAG	2 cut(s)	52, 501
BstV1I	GCAGC	5 cut(s)	52, 164, 233, 352, 565
BstX2I	RGATCY	2 cut(s)	7, 27
BstXI	CCANNNNNNTGG	1 cut(s)	97
BstYI	RGATCY	2 cut(s)	7, 27
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	2 cut(s)	61, 328
BtsIMutI	CAGTG	3 cut(s)	61, 328, 636
Cac8I	GCNNGC	4 cut(s)	70, 363, 453, 588
Cfr13I	GGNCC	1 cut(s)	545
Csp6I	GTAC	2 cut(s)	87, 186
CviQI	GTAC	2 cut(s)	87, 186
DdeI	CTNAG	4 cut(s)	11, 24, 78, 582
DpnI	GATC	4 cut(s)	9, 29, 297, 600
DpnII	GATC	4 cut(s)	7, 27, 295, 598
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	527
Eco130I	CCWWGG	1 cut(s)	464
Eco24I	GRGCYC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	545
Eco53kI	GAGCTC	1 cut(s)	527
Eco57I	CTGAAG	1 cut(s)	459
EcoICRI	GAGCTC	1 cut(s)	527
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoRII	CCWGG	3 cut(s)	17, 244, 628
EcoT14I	CCWWGG	1 cut(s)	464
EcoT22I	ATGCAT	2 cut(s)	266, 725
EcoT38I	GRGCYC	1 cut(s)	529
ErhI	CCWWGG	1 cut(s)	464
FaqI	GGGAC	1 cut(s)	558
FbaI	TGATCA	1 cut(s)	598
Fnu4HI	GCNGC	5 cut(s)	66, 153, 222, 366, 579
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	529
Fsp4HI	GCNGC	5 cut(s)	66, 153, 222, 366, 579
FspBI	CTAG	4 cut(s)	204, 465, 587, 662
GluI	GCNGC	5 cut(s)	66, 153, 222, 366, 579
GsaI	CCCAGC	1 cut(s)	545
GsuI	CTGGAG	3 cut(s)	104, 477, 498
HinfI	GANTC	1 cut(s)	429
Hpy166II	GTNNAC	2 cut(s)	534, 636
Hpy188I	TCNGA	2 cut(s)	25, 729
Hpy188III	TCNNGA	1 cut(s)	477
Hpy8I	GTNNAC	2 cut(s)	534, 636
HpyAV	CCTTC	5 cut(s)	70, 206, 434, 509, 601
HpyCH4III	ACNGT	1 cut(s)	616
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	8 cut(s)	40, 54, 152, 161, 264, 368, 689, 723
HpyF10VI	GCNNNNNNNGC	7 cut(s)	65, 74, 158, 200, 488, 563, 587
HpyF3I	CTNAG	4 cut(s)	11, 24, 78, 582
HpySE526I	ACGT	1 cut(s)	44
Ksp22I	TGATCA	1 cut(s)	598
Kzo9I	GATC	4 cut(s)	7, 27, 295, 598
LmnI	GCTCC	4 cut(s)	123, 129, 479, 524
Lsp1109I	GCAGC	5 cut(s)	52, 164, 233, 352, 565
LweI	GCATC	3 cut(s)	139, 273, 478
MaeI	CTAG	4 cut(s)	204, 465, 587, 662
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	4 cut(s)	9, 29, 297, 600
MboI	GATC	4 cut(s)	7, 27, 295, 598
MboII	GAAGA	2 cut(s)	40, 221
MflI	RGATCY	2 cut(s)	7, 27
MhlI	GDGCHC	2 cut(s)	385, 529
MluCI	AATT	6 cut(s)	240, 282, 446, 624, 752, 786
MlyI	GAGTC	1 cut(s)	423
MmeI	TCCRAC	3 cut(s)	78, 313, 431
MnlI	CCTC	3 cut(s)	266, 501, 775
Mph1103I	ATGCAT	2 cut(s)	266, 725
MseI	TTAA	3 cut(s)	278, 744, 802
MslI	CAYNNNNRTG	1 cut(s)	503
MspA1I	CMGCKG	2 cut(s)	155, 455
MspCI	CTTAAG	1 cut(s)	277
MspR9I	CCNGG	3 cut(s)	19, 246, 630
Mva1269I	GAATGC	1 cut(s)	723
MvaI	CCWGG	3 cut(s)	19, 246, 630
MwoI	GCNNNNNNNGC	7 cut(s)	65, 74, 158, 200, 488, 563, 587
NdeII	GATC	4 cut(s)	7, 27, 295, 598
NheI	GCTAGC	1 cut(s)	586
NlaIV	GGNNCC	2 cut(s)	119, 546
NsiI	ATGCAT	2 cut(s)	266, 725
OliI	CACNNNNGTG	1 cut(s)	503
PctI	GAATGC	1 cut(s)	723
PfoI	TCCNGGA	1 cut(s)	244
PkrI	GCNGC	5 cut(s)	67, 154, 223, 367, 580
PleI	GAGTC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	423
PsiI	TTATAA	1 cut(s)	572
Psp124BI	GAGCTC	1 cut(s)	529
Psp6I	CCWGG	3 cut(s)	17, 244, 628
PspFI	CCCAGC	1 cut(s)	541
PspGI	CCWGG	3 cut(s)	17, 244, 628
PspN4I	GGNNCC	2 cut(s)	119, 546
PspPI	GGNCC	1 cut(s)	545
PstI	CTGCAG	1 cut(s)	56
PsuI	RGATCY	2 cut(s)	7, 27
PvuII	CAGCTG	2 cut(s)	155, 455
RsaI	GTAC	2 cut(s)	88, 187
RsaNI	GTAC	2 cut(s)	87, 186
RseI	CAYNNNNRTG	1 cut(s)	503
SacI	GAGCTC	1 cut(s)	529
SaqAI	TTAA	3 cut(s)	278, 744, 802
SatI	GCNGC	5 cut(s)	66, 153, 222, 366, 579
Sau3AI	GATC	4 cut(s)	7, 27, 295, 598
Sau96I	GGNCC	1 cut(s)	545
SchI	GAGTC	1 cut(s)	423
ScrFI	CCNGG	3 cut(s)	19, 246, 630
SduI	GDGCHC	2 cut(s)	385, 529
SfaNI	GCATC	3 cut(s)	139, 273, 478
SfcI	CTRYAG	2 cut(s)	52, 501
SinI	GGWCC	1 cut(s)	545
SmiMI	CAYNNNNRTG	1 cut(s)	503
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	6 cut(s)	240, 282, 446, 624, 752, 786
SsiI	CCGC	2 cut(s)	5, 105
SspI	AATATT	1 cut(s)	646
SspMI	CTAG	4 cut(s)	204, 465, 587, 662
SstI	GAGCTC	1 cut(s)	529
StyD4I	CCNGG	3 cut(s)	17, 244, 628
StyI	CCWWGG	1 cut(s)	464
TaaI	ACNGT	1 cut(s)	616
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	1 cut(s)	427
TasI	AATT	6 cut(s)	240, 282, 446, 624, 752, 786
Tru1I	TTAA	3 cut(s)	278, 744, 802
Tru9I	TTAA	3 cut(s)	278, 744, 802
TscAI	CASTG	3 cut(s)	61, 328, 643
TseI	GCWGC	5 cut(s)	65, 152, 221, 365, 578
TspGWI	ACGGA	1 cut(s)	84
TspRI	CASTG	3 cut(s)	61, 328, 643
Vha464I	CTTAAG	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	545
XagI	CCTNNNNNAGG	1 cut(s)	419
XapI	RAATTY	2 cut(s)	624, 752
XmaJI	CCTAGG	1 cut(s)	464
XspI	CTAG	4 cut(s)	204, 465, 587, 662
Zsp2I	ATGCAT	2 cut(s)	266, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.