Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004603

Physical Location & Seq

Genomic Coordinates Reverse (-)

6341244 .. 6344368

Gene Structure 3125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1078200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCAGATCTCAGCCCCAGGTCTGAGATCTCCTTCTTGCAAACTTTCCTCTGCAGTGCATTCGCCGCCTGCTTCGCTGAGTTGGTTCTGTTTTGTACCATTCCTTTAGACACTGCTAAAGTCAGGCTTCAGCTCCAAAAGAAAGCAGTCGCGGGGGATGGAGCTGGTGCACCAAGGTATAGGGGCCTATTGGGTACTATGGCTACGATCGCTAGGGAAGAAGGTTTAGCAGCACTTTGGAATGGCATAATTCCAGGATTACAACGCCAATGTATTTACGGAGGCTTGAGAATTGGATTATATGATCCTGTCAAAATTTTCCTTGTTGGCAGTGCTTTTGGTGGGGATATTCCTCTATTCCACAAAATACTTGCTGCTCTATTCACTGGTGCTCTGGCAATCATAGTGGCTAATCCAACTGACCTTGTGAAGGTTCGACTTCAATCTGAAGGAAAATTGCCAGCTGGAGTTCCTAGGCGATATGCTGGAGCCTTAGATGCTTATTCCACTATAGTCAGACAGGAAGGATTAGGGGCCCTGTGGACTGGGCTGGGGCCAAATGTAGCACGGAACGCTATTGTAAATGCTGCCGAACTAGCCAGTTATGATCAAGTGAAGGAGACAATTTTGAAAATTCCAGGGTCCACAGACAATATTTTAACTCATATCCTAGCTGGTCTGGGTGCCGGTTTCTTTGCAGTTTCGATTGGCTCTCCTGTTGACGTGGTGAAATCCAGAATGATGGGAGATTCAACTTACAAAAACACCTTTGATTGCTTCGTCAAAACGTTGAAGTATGAGGGATTTTTGGCCTTCTATAAAGGGTTCCTCCCAAACTTCGGTCGGCTAGGATCGTGGAACGTGCTTATGTTTCTAATGCTAGAGCAAGCGAAAAATGTTATTCGGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0006950 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009628 GO:0012505 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:1902600 GO:1903825 GO:1905039 GO:1990542 GO:1990845

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

304

Amino Acids

32.57

Weight (kDa)

9.27

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	9 - 110	1.1e-17	Mitochondrial carrier protein
Mito_carr	PF00153	118 - 211	3.4e-22	Mitochondrial carrier protein
Mito_carr	PF00153	217 - 301	1e-20	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58970 AT5G58970
fragaria_vesca	FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720
malus_domestica	MD03G1078200.v1.1 MD11G1082900.v1.1
prunus_persica	Prupe.6G063200_v2.0.a1 Prupe.6G063200_v2.0.a1 Prupe.6G063200_v2.0.a1
pyrus_communis	pycom03g06250 pycom11g07100
rosa_chinensis	RchiOBHm_Chr1g0328771 RchiOBHm_Chr5g0067991
rosa_laevigata	RLG00000035950
rosa_multiflora	Rmu_sc0000435.1_g000035
rosa_roxburghii	Rroxscaffold_1G00012610 Rroxscaffold_1G00013320 Rroxscaffold_2G00133940
rosa_rugosa	Rorug05G0387100 Rorug05G0387100
rosa_samantha	Rh5AG446000 Rh5BG463500 Rh5CG485400 Rh5DG477500
rosa_wichuraiana	Rw5G041650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	683
AccII	CGCG	1 cut(s)	152
AciI	CCGC	2 cut(s)	66, 152
AclI	AACGTT	1 cut(s)	788
AclWI	GGATC	2 cut(s)	299, 859
AcsI	RAATTY	2 cut(s)	315, 633
AcuI	CTGAAG	2 cut(s)	113, 468
AfaI	GTAC	2 cut(s)	97, 196
AfiI	CCNNNNNNNGG	2 cut(s)	430, 839
AgsI	TTSAA	4 cut(s)	443, 631, 753, 793
AjiI	CACGTC	1 cut(s)	724
AjnI	CCWGG	3 cut(s)	17, 253, 637
AluBI	AGCT	4 cut(s)	133, 164, 464, 674
AluI	AGCT	4 cut(s)	133, 164, 464, 674
Alw21I	GWGCWC	2 cut(s)	172, 394
Alw26I	GTCTC	1 cut(s)	614
Alw44I	GTGCAC	1 cut(s)	168
AlwI	GGATC	2 cut(s)	299, 859
AoxI	GGCC	4 cut(s)	184, 534, 554, 810
ApaI	GGGCCC	1 cut(s)	538
ApaLI	GTGCAC	1 cut(s)	168
ApeKI	GCWGC	3 cut(s)	230, 374, 587
ApoI	RAATTY	2 cut(s)	315, 633
AspA2I	CCTAGG	1 cut(s)	473
AspS9I	GGNCC	5 cut(s)	184, 534, 535, 554, 642
AsuHPI	GGTGA	1 cut(s)	739
AvaII	GGWCC	1 cut(s)	642
AvrII	CCTAGG	1 cut(s)	473
BaeGI	GKGCMC	2 cut(s)	172, 538
BanI	GGYRCC	1 cut(s)	683
BanII	GRGCYC	1 cut(s)	538
Bbv12I	GWGCWC	2 cut(s)	172, 394
BbvI	GCAGC	3 cut(s)	242, 361, 574
BccI	CCATC	2 cut(s)	152, 736
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	3 cut(s)	19, 255, 639
BclI	TGATCA	1 cut(s)	607
BcoDI	GTCTC	1 cut(s)	614
BfaI	CTAG	6 cut(s)	213, 474, 596, 671, 848, 881
BfmI	CTRYAG	2 cut(s)	52, 510
BglII	AGATCT	2 cut(s)	7, 27
BisI	GCNGC	4 cut(s)	66, 231, 375, 588
BlnI	CCTAGG	1 cut(s)	473
BlsI	GCNGC	4 cut(s)	67, 232, 376, 589
Bme1390I	CCNGG	3 cut(s)	19, 255, 639
Bme18I	GGWCC	1 cut(s)	642
BmgBI	CACGTC	1 cut(s)	724
BmgT120I	GGNCC	5 cut(s)	184, 534, 535, 554, 642
BmiI	GGNNCC	8 cut(s)	185, 490, 535, 536, 555, 643, 685, 827
BmrFI	CCNGG	3 cut(s)	19, 255, 639
BmrI	ACTGGG	1 cut(s)	555
BmsI	GCATC	1 cut(s)	487
BmuI	ACTGGG	1 cut(s)	555
BpmI	CTGGAG	2 cut(s)	486, 507
BpuEI	CTTGAG	1 cut(s)	307
BsaJI	CCNNGG	4 cut(s)	17, 173, 473, 638
Bsc4I	CCNNNNNNNGG	2 cut(s)	430, 839
Bse118I	RCCGGY	1 cut(s)	686
Bse1I	ACTGG	3 cut(s)	391, 550, 600
BseBI	CCWGG	3 cut(s)	19, 255, 639
BseDI	CCNNGG	4 cut(s)	17, 173, 473, 638
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	2 cut(s)	430, 839
BseMII	CTCAG	3 cut(s)	15, 25, 69
BseNI	ACTGG	3 cut(s)	391, 550, 600
BseSI	GKGCMC	2 cut(s)	172, 538
BseXI	GCAGC	3 cut(s)	242, 361, 574
BseYI	CCCAGC	1 cut(s)	550
Bsh1236I	CGCG	1 cut(s)	152
Bsh1285I	CGRYCG	2 cut(s)	210, 844
BshFI	GGCC	4 cut(s)	186, 536, 556, 812
BshNI	GGYRCC	1 cut(s)	683
BsiEI	CGRYCG	2 cut(s)	210, 844
BsiHKAI	GWGCWC	2 cut(s)	172, 394
BsiSI	CCGG	1 cut(s)	687
BslI	CCNNNNNNNGG	2 cut(s)	430, 839
BsmAI	GTCTC	1 cut(s)	614
BsmI	GAATGC	1 cut(s)	59
BsnI	GGCC	4 cut(s)	186, 536, 556, 812
Bsp120I	GGGCCC	1 cut(s)	534
Bsp1286I	GDGCHC	3 cut(s)	172, 394, 538
Bsp143I	GATC	6 cut(s)	7, 27, 207, 304, 607, 851
BspACI	CCGC	2 cut(s)	66, 152
BspANI	GGCC	4 cut(s)	186, 536, 556, 812
BspCNI	CTCAG	3 cut(s)	16, 24, 70
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	8 cut(s)	185, 490, 535, 536, 555, 643, 685, 827
BspMAI	CTGCAG	1 cut(s)	56
BspPI	GGATC	2 cut(s)	299, 859
BspT107I	GGYRCC	1 cut(s)	683
BsrFI	RCCGGY	1 cut(s)	686
BsrI	ACTGG	3 cut(s)	391, 550, 600
BssAI	RCCGGY	1 cut(s)	686
BssECI	CCNNGG	4 cut(s)	17, 173, 473, 638
BssMI	GATC	6 cut(s)	7, 27, 207, 304, 607, 851
BssT1I	CCWWGG	2 cut(s)	173, 473
Bst2UI	CCWGG	3 cut(s)	19, 255, 639
BstC8I	GCNNGC	3 cut(s)	70, 462, 888
BstDEI	CTNAG	4 cut(s)	11, 24, 78, 493
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstF5I	GGATG	1 cut(s)	163
BstFNI	CGCG	1 cut(s)	152
BstKTI	GATC	6 cut(s)	10, 30, 210, 307, 610, 854
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	6 cut(s)	7, 27, 207, 304, 607, 851
BstMCI	CGRYCG	2 cut(s)	210, 844
BstMWI	GCNNNNNNNGC	6 cut(s)	65, 74, 209, 497, 572, 596
BstNI	CCWGG	3 cut(s)	19, 255, 639
BstSCI	CCNGG	3 cut(s)	17, 253, 637
BstSFI	CTRYAG	2 cut(s)	52, 510
BstSLI	GKGCMC	2 cut(s)	172, 538
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	3 cut(s)	242, 361, 574
BstX2I	RGATCY	2 cut(s)	7, 27
BstXI	CCANNNNNNTGG	1 cut(s)	742
BstYI	RGATCY	2 cut(s)	7, 27
BsuRI	GGCC	4 cut(s)	186, 536, 556, 812
BtrI	CACGTC	1 cut(s)	724
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	3 cut(s)	61, 111, 337
BtsIMutI	CAGTG	4 cut(s)	61, 111, 337, 384
Cac8I	GCNNGC	3 cut(s)	70, 462, 888
Cfr10I	RCCGGY	1 cut(s)	686
Cfr13I	GGNCC	5 cut(s)	184, 534, 535, 554, 642
Csp6I	GTAC	2 cut(s)	96, 195
CspCI	CAANNNNNGTGG	2 cut(s)	387, 422
CviQI	GTAC	2 cut(s)	96, 195
DdeI	CTNAG	4 cut(s)	11, 24, 78, 493
DpnI	GATC	6 cut(s)	9, 29, 209, 306, 609, 853
DpnII	GATC	6 cut(s)	7, 27, 207, 304, 607, 851
Eco130I	CCWWGG	2 cut(s)	173, 473
Eco24I	GRGCYC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	642
Eco57I	CTGAAG	2 cut(s)	113, 468
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoO109I	RGGNCCY	3 cut(s)	184, 534, 535
EcoRII	CCWGG	3 cut(s)	17, 253, 637
EcoT14I	CCWWGG	2 cut(s)	173, 473
EcoT38I	GRGCYC	1 cut(s)	538
ErhI	CCWWGG	2 cut(s)	173, 473
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FauI	CCCGC	1 cut(s)	145
FbaI	TGATCA	1 cut(s)	607
Fnu4HI	GCNGC	4 cut(s)	66, 231, 375, 588
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	538
Fsp4HI	GCNGC	4 cut(s)	66, 231, 375, 588
FspBI	CTAG	6 cut(s)	213, 474, 596, 671, 848, 881
GluI	GCNGC	4 cut(s)	66, 231, 375, 588
GsaI	CCCAGC	1 cut(s)	554
GsuI	CTGGAG	2 cut(s)	486, 507
HaeIII	GGCC	4 cut(s)	186, 536, 556, 812
HapII	CCGG	1 cut(s)	687
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HinfI	GANTC	1 cut(s)	749
HpaII	CCGG	1 cut(s)	687
HphI	GGTGA	1 cut(s)	739
Hpy166II	GTNNAC	4 cut(s)	170, 543, 645, 721
Hpy188I	TCNGA	3 cut(s)	25, 448, 518
Hpy188III	TCNNGA	1 cut(s)	735
Hpy8I	GTNNAC	4 cut(s)	170, 543, 645, 721
HpyAV	CCTTC	7 cut(s)	43, 215, 424, 443, 518, 610, 823
HpyCH4IV	ACGT	3 cut(s)	723, 788, 861
HpyCH4V	TGCA	5 cut(s)	40, 54, 59, 170, 698
HpyF10VI	GCNNNNNNNGC	6 cut(s)	65, 74, 209, 497, 572, 596
HpyF3I	CTNAG	4 cut(s)	11, 24, 78, 493
HpySE526I	ACGT	3 cut(s)	723, 788, 861
Ksp22I	TGATCA	1 cut(s)	607
Kzo9I	GATC	6 cut(s)	7, 27, 207, 304, 607, 851
LmnI	GCTCC	3 cut(s)	138, 161, 488
Lsp1109I	GCAGC	3 cut(s)	242, 361, 574
LweI	GCATC	1 cut(s)	487
MaeI	CTAG	6 cut(s)	213, 474, 596, 671, 848, 881
MaeII	ACGT	3 cut(s)	723, 788, 861
MalI	GATC	6 cut(s)	9, 29, 209, 306, 609, 853
MboI	GATC	6 cut(s)	7, 27, 207, 304, 607, 851
MboII	GAAGA	1 cut(s)	230
MflI	RGATCY	2 cut(s)	7, 27
MhlI	GDGCHC	3 cut(s)	172, 394, 538
MluCI	AATT	6 cut(s)	249, 291, 315, 455, 624, 633
MmeI	TCCRAC	1 cut(s)	440
MnlI	CCTC	5 cut(s)	59, 275, 363, 793, 839
MseI	TTAA	1 cut(s)	659
MspA1I	CMGCKG	1 cut(s)	464
MspI	CCGG	1 cut(s)	687
MspR9I	CCNGG	3 cut(s)	19, 255, 639
Mva1269I	GAATGC	1 cut(s)	59
MvaI	CCWGG	3 cut(s)	19, 255, 639
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	6 cut(s)	65, 74, 209, 497, 572, 596
NdeII	GATC	6 cut(s)	7, 27, 207, 304, 607, 851
NlaIV	GGNNCC	8 cut(s)	185, 490, 535, 536, 555, 643, 685, 827
PctI	GAATGC	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	749
PfoI	TCCNGGA	1 cut(s)	253
PkrI	GCNGC	4 cut(s)	67, 232, 376, 589
Ple19I	CGATCG	1 cut(s)	210
Psp1406I	AACGTT	1 cut(s)	788
Psp6I	CCWGG	3 cut(s)	17, 253, 637
PspFI	CCCAGC	1 cut(s)	550
PspGI	CCWGG	3 cut(s)	17, 253, 637
PspN4I	GGNNCC	8 cut(s)	185, 490, 535, 536, 555, 643, 685, 827
PspOMI	GGGCCC	1 cut(s)	534
PspPI	GGNCC	5 cut(s)	184, 534, 535, 554, 642
PstI	CTGCAG	1 cut(s)	56
PsuI	RGATCY	2 cut(s)	7, 27
PvuI	CGATCG	1 cut(s)	210
PvuII	CAGCTG	1 cut(s)	464
RsaI	GTAC	2 cut(s)	97, 196
RsaNI	GTAC	2 cut(s)	96, 195
SaqAI	TTAA	1 cut(s)	659
SatI	GCNGC	4 cut(s)	66, 231, 375, 588
Sau3AI	GATC	6 cut(s)	7, 27, 207, 304, 607, 851
Sau96I	GGNCC	5 cut(s)	184, 534, 535, 554, 642
ScrFI	CCNGG	3 cut(s)	19, 255, 639
SduI	GDGCHC	3 cut(s)	172, 394, 538
SfaNI	GCATC	1 cut(s)	487
SfcI	CTRYAG	2 cut(s)	52, 510
SinI	GGWCC	1 cut(s)	642
SmlI	CTYRAG	1 cut(s)	286
SmoI	CTYRAG	1 cut(s)	286
Sse9I	AATT	6 cut(s)	249, 291, 315, 455, 624, 633
SsiI	CCGC	2 cut(s)	66, 152
SspI	AATATT	1 cut(s)	655
SspMI	CTAG	6 cut(s)	213, 474, 596, 671, 848, 881
StyD4I	CCNGG	3 cut(s)	17, 253, 637
StyI	CCWWGG	2 cut(s)	173, 473
TaiI	ACGT	3 cut(s)	726, 791, 864
TaqI	TCGA	2 cut(s)	436, 704
TaqII	GACCGA	1 cut(s)	830
TasI	AATT	6 cut(s)	249, 291, 315, 455, 624, 633
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	1 cut(s)	749
Tru1I	TTAA	1 cut(s)	659
Tru9I	TTAA	1 cut(s)	659
TscAI	CASTG	4 cut(s)	61, 118, 337, 391
TseI	GCWGC	3 cut(s)	230, 374, 587
TspGWI	ACGGA	2 cut(s)	294, 583
TspRI	CASTG	4 cut(s)	61, 118, 337, 391
VneI	GTGCAC	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	642
XagI	CCTNNNNNAGG	1 cut(s)	428
XapI	RAATTY	2 cut(s)	315, 633
XmaJI	CCTAGG	1 cut(s)	473
XspI	CTAG	6 cut(s)	213, 474, 596, 671, 848, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.