Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004603

Physical Location & Seq

Genomic Coordinates Reverse (-)

71453427 .. 71456552

Gene Structure 3126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00133940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGCGGATCTCACCCCAGGTGTGAGATCTCATTCTTTCGTACGTTCCTTTGCGTGCCTTCGCTGCTTGTTTCACCGAGAAGCTGTAGGTGATGCAGTTGGTGCACCTAAGTATAGGGGCTTCTTGGGTACTATGGCTACCATTGCTAGAGAAGAAGGTTTAGCAACACTTTGGAATGGTATAATTCCGTGGTTACAGCAACAATGTATCTATGGAGGCTTAAGAATTGGGTCATATGATCCTGAAGGTTTAGGAGCTCTATGGACTGGGGTGGGACCAAATGTAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0006950 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009628 GO:0012505 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:1902600 GO:1903825 GO:1905039 GO:1990542 GO:1990845

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

96

Amino Acids

10.34

Weight (kDa)

7.76

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	35 - 80	5.2e-06	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58970 AT5G58970
fragaria_vesca	FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720
malus_domestica	MD03G1078200.v1.1 MD11G1082900.v1.1
prunus_persica	Prupe.6G063200_v2.0.a1 Prupe.6G063200_v2.0.a1 Prupe.6G063200_v2.0.a1
pyrus_communis	pycom03g06250 pycom11g07100
rosa_chinensis	RchiOBHm_Chr1g0328771 RchiOBHm_Chr5g0067991
rosa_laevigata	RLG00000035950
rosa_multiflora	Rmu_sc0000435.1_g000035
rosa_roxburghii	Rroxscaffold_1G00012610 Rroxscaffold_1G00013320 Rroxscaffold_2G00133940
rosa_rugosa	Rorug05G0387100 Rorug05G0387100
rosa_samantha	Rh5AG446000 Rh5BG463500 Rh5CG485400 Rh5DG477500
rosa_wichuraiana	Rw5G041650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	15, 233
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	2 cut(s)	42, 130
AflII	CTTAAG	1 cut(s)	220
AjnI	CCWGG	1 cut(s)	16
AluBI	AGCT	2 cut(s)	83, 257
AluI	AGCT	2 cut(s)	83, 257
Alw21I	GWGCWC	2 cut(s)	106, 259
Alw44I	GTGCAC	1 cut(s)	102
AlwI	GGATC	2 cut(s)	15, 233
ApaLI	GTGCAC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	3 cut(s)	4, 65, 101
AvaII	GGWCC	1 cut(s)	275
BaeGI	GKGCMC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	259
BarI	GAAGNNNNNNTAC	2 cut(s)	104, 136
Bbv12I	GWGCWC	2 cut(s)	106, 259
BbvI	GCAGC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	18
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	84
BfrI	CTTAAG	1 cut(s)	220
BglII	AGATCT	1 cut(s)	26
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
Bme1390I	CCNGG	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	1 cut(s)	276
BmrFI	CCNGG	1 cut(s)	18
BmrI	ACTGGG	1 cut(s)	276
BmsI	GCATC	1 cut(s)	82
BmuI	ACTGGG	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	16, 188
Bse1I	ACTGG	1 cut(s)	271
Bse3DI	GCAATG	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	18
BseDI	CCNNGG	2 cut(s)	16, 188
BseMI	GCAATG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	271
BseSI	GKGCMC	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	50
BsiHKAI	GWGCWC	2 cut(s)	106, 259
BsiWI	CGTACG	1 cut(s)	40
Bsp1286I	GDGCHC	2 cut(s)	106, 259
Bsp143I	GATC	3 cut(s)	7, 26, 238
BspACI	CCGC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	276
BspPI	GGATC	2 cut(s)	15, 233
BspTI	CTTAAG	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	271
BssECI	CCNNGG	2 cut(s)	16, 188
BssMI	GATC	3 cut(s)	7, 26, 238
Bst2UI	CCWGG	1 cut(s)	18
BstAFI	CTTAAG	1 cut(s)	220
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	1 cut(s)	108
BstDSI	CCRYGG	1 cut(s)	188
BstKTI	GATC	3 cut(s)	10, 29, 241
BstMBI	GATC	3 cut(s)	7, 26, 238
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 101, 143
BstNI	CCWGG	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	84
BstSLI	GKGCMC	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	50
BstX2I	RGATCY	2 cut(s)	7, 26
BstYI	RGATCY	2 cut(s)	7, 26
BtgI	CCRYGG	1 cut(s)	188
Cac8I	GCNNGC	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	275
Csp6I	GTAC	2 cut(s)	41, 129
CviAII	CATG	1 cut(s)	288
CviJI	RGCY	5 cut(s)	83, 120, 137, 219, 257
CviKI_1	RGCY	5 cut(s)	83, 120, 137, 219, 257
CviQI	GTAC	2 cut(s)	41, 129
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	3 cut(s)	9, 28, 240
DpnII	GATC	3 cut(s)	7, 26, 238
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	275
Eco53kI	GAGCTC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	264
EcoICRI	GAGCTC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	259
FaeI	CATG	1 cut(s)	291
FaiI	YATR	8 cut(s)	114, 134, 182, 213, 235, 237, 262, 289
FatI	CATG	1 cut(s)	287
FauNDI	CATATG	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	64
FriOI	GRGCYC	1 cut(s)	259
Fsp4HI	GCNGC	1 cut(s)	64
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	1 cut(s)	64
Hin1II	CATG	1 cut(s)	291
HphI	GGTGA	3 cut(s)	4, 65, 101
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	1 cut(s)	104
HpyAV	CCTTC	3 cut(s)	68, 149, 239
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	2 cut(s)	95, 104
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 101, 143
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	43
Hsp92II	CATG	1 cut(s)	291
Kzo9I	GATC	3 cut(s)	7, 26, 238
LmnI	GCTCC	1 cut(s)	254
LpnPI	CCDG	4 cut(s)	3, 30, 252, 255
Lsp1109I	GCAGC	1 cut(s)	50
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	1 cut(s)	43
MaeIII	GTNAC	1 cut(s)	192
MalI	GATC	3 cut(s)	9, 28, 240
MboI	GATC	3 cut(s)	7, 26, 238
MboII	GAAGA	1 cut(s)	164
MflI	RGATCY	2 cut(s)	7, 26
MhlI	GDGCHC	2 cut(s)	106, 259
MluCI	AATT	2 cut(s)	183, 225
MnlI	CCTC	1 cut(s)	209
MseI	TTAA	1 cut(s)	221
MspCI	CTTAAG	1 cut(s)	220
MspR9I	CCNGG	1 cut(s)	18
MvaI	CCWGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	3 cut(s)	63, 101, 143
NdeI	CATATG	1 cut(s)	235
NdeII	GATC	3 cut(s)	7, 26, 238
NlaIII	CATG	1 cut(s)	291
NlaIV	GGNNCC	1 cut(s)	276
Pfl23II	CGTACG	1 cut(s)	40
PkrI	GCNGC	1 cut(s)	65
Psp124BI	GAGCTC	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	16
PspLI	CGTACG	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	276
PspPI	GGNCC	1 cut(s)	275
PsuI	RGATCY	2 cut(s)	7, 26
RsaI	GTAC	2 cut(s)	42, 130
RsaNI	GTAC	2 cut(s)	41, 129
SacI	GAGCTC	1 cut(s)	259
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	3 cut(s)	7, 26, 238
Sau96I	GGNCC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	2 cut(s)	106, 259
SetI	ASST	8 cut(s)	22, 46, 85, 91, 109, 160, 250, 259
SfaNI	GCATC	1 cut(s)	82
SfcI	CTRYAG	1 cut(s)	84
SinI	GGWCC	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
Sse9I	AATT	2 cut(s)	183, 225
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	147
SstI	GAGCTC	1 cut(s)	259
StyD4I	CCNGG	1 cut(s)	16
TaiI	ACGT	1 cut(s)	46
TasI	AATT	2 cut(s)	183, 225
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TseI	GCWGC	1 cut(s)	63
TspGWI	ACGGA	1 cut(s)	177
Vha464I	CTTAAG	1 cut(s)	220
VneI	GTGCAC	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	275
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.