Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004603

Physical Location & Seq

Genomic Coordinates Reverse (-)

4914202 .. 4916837

Gene Structure 2636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g06250.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCAGATCTCAGCCCCAGGTCTGAGATCTCCTTCTTGCAAACTTTCATCTGCAGTGCTTTCGCCGCCTGCTTCGCTGAGTTTTGTACCATTCCTTTAGACACTGCTAAAGTCAGGCTTCAGCTCCAAAAGAAAGCAGTCGCGGGGGATGATGCTGGTGCACCAAAATATAGGGGCCTATTGGGTACTATGGCTACAATCGCTAGGGAAGAAGGTTTAGCAGCACTTTGGAATGGCATAATTCCAGGATTACAACGCCAATGTATTTACGGAGGCTTGAGAATTGGATTATATGATCCTGTCAAAATTTTCCTTGTTGGCAGTGCTATTGTTGGAGATATTCCTCTATTCCACAAAATACTTGCAGCTCTATTCACTGGTGCTCTGGCAATCATAGTGGCTAATCCAACTGACCTTGTGAAGGTTCGACTTCAATCTGAAGGAAAATTGCCAGCTGGAGTTCCTAGGCGATATGCTGGAGCCTTAGATGCTTATTCCACTATAGTAAGACAGGAAGGATTAGGGGCCCTATGGACTGGGCTGGTGCCAAATGTAGCACGGAATGCTATTGTAAATGCTGCCGAACTAGCCAGTTATGATCAAGTGAAGGAGACAATTTTGAAAATTCCAGGGTCCACGGACAATATTTTAACTCATATCCTAGCTGGTCTGGGTGCCGGTTTCTTTGCAGTTTCGATTGGCTCTCCTGTTGACATGGTGAAATCCAGAATGATGGGAGATTCAACTTACAAAAACACGTTGGATTGCTTCGTCAAAACGTTGAAGTATGAGGGATTTTTGGCCTTCTATAAAGGGTTCCTCCCAAACTTCGGTCGGCTAGGATCATGGAATGTGCTTATGTTTCTAATGCTAGAGCAAGCGAAAAATGTTTTTCGGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0006950 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009628 GO:0012505 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:1902600 GO:1903825 GO:1905039 GO:1990542 GO:1990845

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

301

Amino Acids

32.36

Weight (kDa)

9.15

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58970 AT5G58970
fragaria_vesca	FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720
malus_domestica	MD03G1078200.v1.1 MD11G1082900.v1.1
prunus_persica	Prupe.6G063200_v2.0.a1 Prupe.6G063200_v2.0.a1 Prupe.6G063200_v2.0.a1
pyrus_communis	pycom03g06250 pycom11g07100
rosa_chinensis	RchiOBHm_Chr1g0328771 RchiOBHm_Chr5g0067991
rosa_laevigata	RLG00000035950
rosa_multiflora	Rmu_sc0000435.1_g000035
rosa_roxburghii	Rroxscaffold_1G00012610 Rroxscaffold_1G00013320 Rroxscaffold_2G00133940
rosa_rugosa	Rorug05G0387100 Rorug05G0387100
rosa_samantha	Rh5AG446000 Rh5BG463500 Rh5CG485400 Rh5DG477500
rosa_wichuraiana	Rw5G041650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	544, 674
AccII	CGCG	1 cut(s)	143
AciI	CCGC	2 cut(s)	66, 143
AclI	AACGTT	1 cut(s)	779
AclWI	GGATC	2 cut(s)	290, 850
AcsI	RAATTY	2 cut(s)	306, 624
AcuI	CTGAAG	2 cut(s)	104, 459
AfaI	GTAC	2 cut(s)	88, 187
AfiI	CCNNNNNNNGG	2 cut(s)	421, 830
AflIII	ACRYGT	1 cut(s)	756
AgsI	TTSAA	4 cut(s)	434, 622, 744, 784
AjnI	CCWGG	3 cut(s)	17, 244, 628
AluBI	AGCT	4 cut(s)	124, 368, 455, 665
AluI	AGCT	4 cut(s)	124, 368, 455, 665
Alw21I	GWGCWC	2 cut(s)	163, 385
Alw26I	GTCTC	1 cut(s)	605
Alw44I	GTGCAC	1 cut(s)	159
AlwI	GGATC	2 cut(s)	290, 850
AoxI	GGCC	3 cut(s)	175, 525, 801
ApaI	GGGCCC	1 cut(s)	529
ApaLI	GTGCAC	1 cut(s)	159
ApeKI	GCWGC	3 cut(s)	221, 365, 578
ApoI	RAATTY	2 cut(s)	306, 624
AspA2I	CCTAGG	1 cut(s)	464
AspS9I	GGNCC	4 cut(s)	175, 525, 526, 633
AsuHPI	GGTGA	1 cut(s)	730
AvaII	GGWCC	1 cut(s)	633
AvrII	CCTAGG	1 cut(s)	464
BaeGI	GKGCMC	2 cut(s)	163, 529
BanI	GGYRCC	2 cut(s)	544, 674
BanII	GRGCYC	1 cut(s)	529
Bbv12I	GWGCWC	2 cut(s)	163, 385
BbvI	GCAGC	3 cut(s)	233, 377, 565
BccI	CCATC	1 cut(s)	727
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	3 cut(s)	19, 246, 630
BclI	TGATCA	1 cut(s)	598
BcoDI	GTCTC	1 cut(s)	605
BfaI	CTAG	6 cut(s)	204, 465, 587, 662, 839, 872
BfmI	CTRYAG	2 cut(s)	52, 501
BglII	AGATCT	2 cut(s)	7, 27
BisI	GCNGC	4 cut(s)	66, 222, 366, 579
BlnI	CCTAGG	1 cut(s)	464
BlsI	GCNGC	4 cut(s)	67, 223, 367, 580
Bme1390I	CCNGG	3 cut(s)	19, 246, 630
Bme18I	GGWCC	1 cut(s)	633
BmgT120I	GGNCC	4 cut(s)	175, 525, 526, 633
BmiI	GGNNCC	8 cut(s)	176, 481, 526, 527, 546, 634, 676, 818
BmrFI	CCNGG	3 cut(s)	19, 246, 630
BmrI	ACTGGG	1 cut(s)	546
BmsI	GCATC	2 cut(s)	142, 478
BmuI	ACTGGG	1 cut(s)	546
BpmI	CTGGAG	2 cut(s)	477, 498
BpuEI	CTTGAG	1 cut(s)	298
BsaJI	CCNNGG	4 cut(s)	17, 464, 629, 636
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 830
Bse118I	RCCGGY	1 cut(s)	677
Bse1I	ACTGG	3 cut(s)	382, 541, 591
BseBI	CCWGG	3 cut(s)	19, 246, 630
BseDI	CCNNGG	4 cut(s)	17, 464, 629, 636
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	2 cut(s)	421, 830
BseMII	CTCAG	3 cut(s)	15, 25, 69
BseNI	ACTGG	3 cut(s)	382, 541, 591
BseSI	GKGCMC	2 cut(s)	163, 529
BseXI	GCAGC	3 cut(s)	233, 377, 565
Bsh1236I	CGCG	1 cut(s)	143
Bsh1285I	CGRYCG	1 cut(s)	835
BshFI	GGCC	3 cut(s)	177, 527, 803
BshNI	GGYRCC	2 cut(s)	544, 674
BsiEI	CGRYCG	1 cut(s)	835
BsiHKAI	GWGCWC	2 cut(s)	163, 385
BsiSI	CCGG	1 cut(s)	678
BslI	CCNNNNNNNGG	2 cut(s)	421, 830
BsmAI	GTCTC	1 cut(s)	605
BsmI	GAATGC	1 cut(s)	568
BsnI	GGCC	3 cut(s)	177, 527, 803
Bsp120I	GGGCCC	1 cut(s)	525
Bsp1286I	GDGCHC	3 cut(s)	163, 385, 529
Bsp143I	GATC	5 cut(s)	7, 27, 295, 598, 842
BspACI	CCGC	2 cut(s)	66, 143
BspANI	GGCC	3 cut(s)	177, 527, 803
BspCNI	CTCAG	3 cut(s)	16, 24, 70
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	8 cut(s)	176, 481, 526, 527, 546, 634, 676, 818
BspMAI	CTGCAG	1 cut(s)	56
BspPI	GGATC	2 cut(s)	290, 850
BspT107I	GGYRCC	2 cut(s)	544, 674
BsrFI	RCCGGY	1 cut(s)	677
BsrI	ACTGG	3 cut(s)	382, 541, 591
BssAI	RCCGGY	1 cut(s)	677
BssECI	CCNNGG	4 cut(s)	17, 464, 629, 636
BssMI	GATC	5 cut(s)	7, 27, 295, 598, 842
BssT1I	CCWWGG	1 cut(s)	464
Bst2UI	CCWGG	3 cut(s)	19, 246, 630
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstC8I	GCNNGC	3 cut(s)	70, 453, 879
BstDEI	CTNAG	4 cut(s)	11, 24, 78, 484
BstDSI	CCRYGG	1 cut(s)	636
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstF5I	GGATG	1 cut(s)	154
BstFNI	CGCG	1 cut(s)	143
BstKTI	GATC	5 cut(s)	10, 30, 298, 601, 845
BstMAI	GTCTC	1 cut(s)	605
BstMBI	GATC	5 cut(s)	7, 27, 295, 598, 842
BstMCI	CGRYCG	1 cut(s)	835
BstMWI	GCNNNNNNNGC	6 cut(s)	65, 74, 200, 488, 563, 587
BstNI	CCWGG	3 cut(s)	19, 246, 630
BstSCI	CCNGG	3 cut(s)	17, 244, 628
BstSFI	CTRYAG	2 cut(s)	52, 501
BstSLI	GKGCMC	2 cut(s)	163, 529
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	3 cut(s)	233, 377, 565
BstX2I	RGATCY	2 cut(s)	7, 27
BstXI	CCANNNNNNTGG	1 cut(s)	733
BstYI	RGATCY	2 cut(s)	7, 27
BsuRI	GGCC	3 cut(s)	177, 527, 803
BtgI	CCRYGG	1 cut(s)	636
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	3 cut(s)	61, 102, 328
BtsIMutI	CAGTG	4 cut(s)	61, 102, 328, 375
Cac8I	GCNNGC	3 cut(s)	70, 453, 879
Cfr10I	RCCGGY	1 cut(s)	677
Cfr13I	GGNCC	4 cut(s)	175, 525, 526, 633
Csp6I	GTAC	2 cut(s)	87, 186
CspCI	CAANNNNNGTGG	2 cut(s)	378, 413
CviAII	CATG	2 cut(s)	715, 846
CviQI	GTAC	2 cut(s)	87, 186
DdeI	CTNAG	4 cut(s)	11, 24, 78, 484
DpnI	GATC	5 cut(s)	9, 29, 297, 600, 844
DpnII	GATC	5 cut(s)	7, 27, 295, 598, 842
Eco130I	CCWWGG	1 cut(s)	464
Eco24I	GRGCYC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	633
Eco57I	CTGAAG	2 cut(s)	104, 459
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoO109I	RGGNCCY	3 cut(s)	175, 525, 526
EcoRII	CCWGG	3 cut(s)	17, 244, 628
EcoT14I	CCWWGG	1 cut(s)	464
EcoT38I	GRGCYC	1 cut(s)	529
ErhI	CCWWGG	1 cut(s)	464
FaeI	CATG	2 cut(s)	718, 849
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FatI	CATG	2 cut(s)	714, 845
FauI	CCCGC	1 cut(s)	136
FbaI	TGATCA	1 cut(s)	598
Fnu4HI	GCNGC	4 cut(s)	66, 222, 366, 579
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	529
Fsp4HI	GCNGC	4 cut(s)	66, 222, 366, 579
FspBI	CTAG	6 cut(s)	204, 465, 587, 662, 839, 872
GluI	GCNGC	4 cut(s)	66, 222, 366, 579
GsuI	CTGGAG	2 cut(s)	477, 498
HaeIII	GGCC	3 cut(s)	177, 527, 803
HapII	CCGG	1 cut(s)	678
Hin1II	CATG	2 cut(s)	718, 849
HincII	GTYRAC	1 cut(s)	712
HindII	GTYRAC	1 cut(s)	712
HinfI	GANTC	1 cut(s)	740
HpaII	CCGG	1 cut(s)	678
HphI	GGTGA	1 cut(s)	730
Hpy166II	GTNNAC	3 cut(s)	161, 636, 712
Hpy188I	TCNGA	2 cut(s)	25, 439
Hpy188III	TCNNGA	1 cut(s)	726
Hpy8I	GTNNAC	3 cut(s)	161, 636, 712
HpyAV	CCTTC	7 cut(s)	43, 206, 415, 434, 509, 601, 814
HpyCH4IV	ACGT	2 cut(s)	758, 779
HpyCH4V	TGCA	5 cut(s)	40, 54, 161, 365, 689
HpyF10VI	GCNNNNNNNGC	6 cut(s)	65, 74, 200, 488, 563, 587
HpyF3I	CTNAG	4 cut(s)	11, 24, 78, 484
HpySE526I	ACGT	2 cut(s)	758, 779
Hsp92II	CATG	2 cut(s)	718, 849
Ksp22I	TGATCA	1 cut(s)	598
Kzo9I	GATC	5 cut(s)	7, 27, 295, 598, 842
LmnI	GCTCC	2 cut(s)	129, 479
Lsp1109I	GCAGC	3 cut(s)	233, 377, 565
LweI	GCATC	2 cut(s)	142, 478
MaeI	CTAG	6 cut(s)	204, 465, 587, 662, 839, 872
MaeII	ACGT	2 cut(s)	758, 779
MalI	GATC	5 cut(s)	9, 29, 297, 600, 844
MboI	GATC	5 cut(s)	7, 27, 295, 598, 842
MboII	GAAGA	1 cut(s)	221
MflI	RGATCY	2 cut(s)	7, 27
MhlI	GDGCHC	3 cut(s)	163, 385, 529
MluCI	AATT	6 cut(s)	240, 282, 306, 446, 615, 624
MmeI	TCCRAC	3 cut(s)	313, 431, 741
MnlI	CCTC	4 cut(s)	266, 354, 784, 830
MseI	TTAA	1 cut(s)	650
MspA1I	CMGCKG	1 cut(s)	455
MspI	CCGG	1 cut(s)	678
MspR9I	CCNGG	3 cut(s)	19, 246, 630
Mva1269I	GAATGC	1 cut(s)	568
MvaI	CCWGG	3 cut(s)	19, 246, 630
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	6 cut(s)	65, 74, 200, 488, 563, 587
NdeII	GATC	5 cut(s)	7, 27, 295, 598, 842
NlaIII	CATG	2 cut(s)	718, 849
NlaIV	GGNNCC	8 cut(s)	176, 481, 526, 527, 546, 634, 676, 818
PctI	GAATGC	1 cut(s)	568
PfeI	GAWTC	1 cut(s)	740
PfoI	TCCNGGA	1 cut(s)	244
PkrI	GCNGC	4 cut(s)	67, 223, 367, 580
Psp1406I	AACGTT	1 cut(s)	779
Psp6I	CCWGG	3 cut(s)	17, 244, 628
PspGI	CCWGG	3 cut(s)	17, 244, 628
PspN4I	GGNNCC	8 cut(s)	176, 481, 526, 527, 546, 634, 676, 818
PspOMI	GGGCCC	1 cut(s)	525
PspPI	GGNCC	4 cut(s)	175, 525, 526, 633
PstI	CTGCAG	1 cut(s)	56
PsuI	RGATCY	2 cut(s)	7, 27
PvuII	CAGCTG	1 cut(s)	455
RsaI	GTAC	2 cut(s)	88, 187
RsaNI	GTAC	2 cut(s)	87, 186
SaqAI	TTAA	1 cut(s)	650
SatI	GCNGC	4 cut(s)	66, 222, 366, 579
Sau3AI	GATC	5 cut(s)	7, 27, 295, 598, 842
Sau96I	GGNCC	4 cut(s)	175, 525, 526, 633
ScrFI	CCNGG	3 cut(s)	19, 246, 630
SduI	GDGCHC	3 cut(s)	163, 385, 529
SfaNI	GCATC	2 cut(s)	142, 478
SfcI	CTRYAG	2 cut(s)	52, 501
SinI	GGWCC	1 cut(s)	633
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	6 cut(s)	240, 282, 306, 446, 615, 624
SsiI	CCGC	2 cut(s)	66, 143
SspI	AATATT	1 cut(s)	646
SspMI	CTAG	6 cut(s)	204, 465, 587, 662, 839, 872
StyD4I	CCNGG	3 cut(s)	17, 244, 628
StyI	CCWWGG	1 cut(s)	464
TaiI	ACGT	2 cut(s)	761, 782
TaqI	TCGA	2 cut(s)	427, 695
TaqII	GACCGA	1 cut(s)	821
TasI	AATT	6 cut(s)	240, 282, 306, 446, 615, 624
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	1 cut(s)	740
Tru1I	TTAA	1 cut(s)	650
Tru9I	TTAA	1 cut(s)	650
TscAI	CASTG	4 cut(s)	61, 109, 328, 382
TseI	GCWGC	3 cut(s)	221, 365, 578
TspDTI	ATGAA	1 cut(s)	37
TspGWI	ACGGA	3 cut(s)	285, 574, 653
TspRI	CASTG	4 cut(s)	61, 109, 328, 382
VneI	GTGCAC	1 cut(s)	159
VpaK11BI	GGWCC	1 cut(s)	633
XagI	CCTNNNNNAGG	1 cut(s)	419
XapI	RAATTY	2 cut(s)	306, 624
XmaJI	CCTAGG	1 cut(s)	464
XspI	CTAG	6 cut(s)	204, 465, 587, 662, 839, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.