Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004603

Physical Location & Seq

Genomic Coordinates Reverse (-)

4360269 .. 4364258

Gene Structure 3990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G063200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCAGATCTCAGCCCCAGGTCTGAGATCTCATTCTTGCAAACTTTCCTGTGCAGTGCTTTCGCTGCCTGTTTCGCTGAGTTCTGCACCATTCCTTTAGACACTGCTAAAGTCAGGCTCCAGCTCCAAAAGAAAGCAGTTGTGGGGGATACAACTGGCTCACAGAAATATAGGGGCTTGTTCGGTACTATGGCTACCATCGCTAGGGAAGAAGGTTTAGCAGCACTTTGGAATGGCATAATTCCAGGATTACAACGCCAGTGTATTTACGGAGGCTTAAGGATTGGGTTATATGATCCTGTCAAAATTTTCCTTGTTGGCAGTGCTTTTGTTGGAGATATTCCTCTGTTCCACAAAATACTTGCTGCTCTATTGACTGGTGCTCTGGCAATCATAGTGGCTAATCCAACGGACCTTGTGAAGGTTCGACTTCAAGCTGAAGGAAAATTGCCAGCTGGAGTTCCTAGGCGTTATTCTGGAGCTGTAGATGCTTATTTCACTATAGTGAGACAGGAAGGAGTAGGGGCCCTGTGGACTGGGCTGGGGCCAAATGTAGCACGAAATGCTATTATAAATGCTGCTGAACTAGCCAGTTATGATCAAGTAAAGGAGACGATTTTGAAAATTCCAGGGTTCATGGACAATATTTTCACTCATCTCCTAGCTGGTCTGGGTGCCGGTTTTTTTGCAGTTTGTATTGGCTCTCCTGTTGATGTGGTGAAATCTAGAATGATGGGAGATTCTACTTACAAAAACACCTTTGACTGCTTCATCAAAACTTTGAAGTATGAGGGATTTTTGGCCTTTTATAAAGGGTTCCTCCCAAACTTTGGTCGGCTAGGATCTTGGAATGTGATTATGTTTCTAGTGCTAGAGCAAGCGAAAAATATTTTCAGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0006950 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009628 GO:0012505 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:1902600 GO:1903825 GO:1905039 GO:1990542 GO:1990845

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

301

Amino Acids

32.63

Weight (kDa)

9.19

Isoelectric Point (pI)

33.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58970 AT5G58970
fragaria_vesca	FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720 FvH4_3g37720
malus_domestica	MD03G1078200.v1.1 MD11G1082900.v1.1
prunus_persica	Prupe.6G063200_v2.0.a1 Prupe.6G063200_v2.0.a1 Prupe.6G063200_v2.0.a1
pyrus_communis	pycom03g06250 pycom11g07100
rosa_chinensis	RchiOBHm_Chr1g0328771 RchiOBHm_Chr5g0067991
rosa_laevigata	RLG00000035950
rosa_multiflora	Rmu_sc0000435.1_g000035
rosa_roxburghii	Rroxscaffold_1G00012610 Rroxscaffold_1G00013320 Rroxscaffold_2G00133940
rosa_rugosa	Rorug05G0387100 Rorug05G0387100
rosa_samantha	Rh5AG446000 Rh5BG463500 Rh5CG485400 Rh5DG477500
rosa_wichuraiana	Rw5G041650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	572, 810
AccB1I	GGYRCC	1 cut(s)	674
AccB7I	CCANNNNNTGG	1 cut(s)	830
AclWI	GGATC	2 cut(s)	290, 850
AcsI	RAATTY	2 cut(s)	306, 624
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	1 cut(s)	187
AfiI	CCNNNNNNNGG	3 cut(s)	204, 421, 830
AflII	CTTAAG	1 cut(s)	277
AgsI	TTSAA	3 cut(s)	434, 622, 784
AjnI	CCWGG	3 cut(s)	17, 244, 628
AleI	CACNNNNGTG	1 cut(s)	503
AluBI	AGCT	5 cut(s)	124, 437, 455, 482, 665
AluI	AGCT	5 cut(s)	124, 437, 455, 482, 665
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	2 cut(s)	502, 605
AlwI	GGATC	2 cut(s)	290, 850
AoxI	GGCC	3 cut(s)	525, 545, 801
ApaI	GGGCCC	1 cut(s)	529
ApeKI	GCWGC	4 cut(s)	65, 221, 365, 578
ApoI	RAATTY	2 cut(s)	306, 624
AspA2I	CCTAGG	1 cut(s)	464
AspS9I	GGNCC	4 cut(s)	412, 525, 526, 545
AsuHPI	GGTGA	1 cut(s)	730
AvaII	GGWCC	1 cut(s)	412
AvrII	CCTAGG	1 cut(s)	464
BaeGI	GKGCMC	1 cut(s)	529
BanI	GGYRCC	1 cut(s)	674
BanII	GRGCYC	1 cut(s)	529
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	4 cut(s)	52, 233, 352, 565
BccI	CCATC	2 cut(s)	206, 727
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	3 cut(s)	19, 246, 630
BciVI	GTATCC	1 cut(s)	142
BclI	TGATCA	1 cut(s)	598
BcoDI	GTCTC	2 cut(s)	502, 605
BfaI	CTAG	8 cut(s)	204, 465, 587, 662, 726, 839, 866, 872
BfmI	CTRYAG	2 cut(s)	483, 501
BfrI	CTTAAG	1 cut(s)	277
BfuI	GTATCC	1 cut(s)	142
BglII	AGATCT	2 cut(s)	7, 27
BisI	GCNGC	4 cut(s)	66, 222, 366, 579
BlnI	CCTAGG	1 cut(s)	464
BlsI	GCNGC	4 cut(s)	67, 223, 367, 580
Bme1390I	CCNGG	3 cut(s)	19, 246, 630
Bme18I	GGWCC	1 cut(s)	412
BmgT120I	GGNCC	4 cut(s)	412, 525, 526, 545
BmiI	GGNNCC	6 cut(s)	119, 526, 527, 546, 676, 818
BmrFI	CCNGG	3 cut(s)	19, 246, 630
BmrI	ACTGGG	1 cut(s)	546
BmsI	GCATC	1 cut(s)	478
BmuI	ACTGGG	1 cut(s)	546
BpmI	CTGGAG	3 cut(s)	104, 477, 498
BsaJI	CCNNGG	3 cut(s)	17, 464, 629
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 421, 830
Bse118I	RCCGGY	1 cut(s)	677
Bse1I	ACTGG	5 cut(s)	160, 259, 382, 541, 591
BseBI	CCWGG	3 cut(s)	19, 246, 630
BseDI	CCNNGG	3 cut(s)	17, 464, 629
BseLI	CCNNNNNNNGG	3 cut(s)	204, 421, 830
BseMII	CTCAG	3 cut(s)	15, 25, 69
BseNI	ACTGG	5 cut(s)	160, 259, 382, 541, 591
BseSI	GKGCMC	1 cut(s)	529
BseXI	GCAGC	4 cut(s)	52, 233, 352, 565
BseYI	CCCAGC	1 cut(s)	541
BsgI	GTGCAG	2 cut(s)	70, 73
BshFI	GGCC	3 cut(s)	527, 547, 803
BshNI	GGYRCC	1 cut(s)	674
BsiHKAI	GWGCWC	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	678
BslI	CCNNNNNNNGG	3 cut(s)	204, 421, 830
BsmAI	GTCTC	2 cut(s)	502, 605
BsmBI	CGTCTC	1 cut(s)	605
BsnI	GGCC	3 cut(s)	527, 547, 803
Bsp120I	GGGCCC	1 cut(s)	525
Bsp1286I	GDGCHC	2 cut(s)	385, 529
Bsp143I	GATC	5 cut(s)	7, 27, 295, 598, 842
BspANI	GGCC	3 cut(s)	527, 547, 803
BspCNI	CTCAG	3 cut(s)	16, 24, 70
BspLI	GGNNCC	6 cut(s)	119, 526, 527, 546, 676, 818
BspPI	GGATC	2 cut(s)	290, 850
BspT107I	GGYRCC	1 cut(s)	674
BspTI	CTTAAG	1 cut(s)	277
BsrFI	RCCGGY	1 cut(s)	677
BsrI	ACTGG	5 cut(s)	160, 259, 382, 541, 591
BssAI	RCCGGY	1 cut(s)	677
BssECI	CCNNGG	3 cut(s)	17, 464, 629
BssMI	GATC	5 cut(s)	7, 27, 295, 598, 842
BssT1I	CCWWGG	1 cut(s)	464
Bst2UI	CCWGG	3 cut(s)	19, 246, 630
BstAFI	CTTAAG	1 cut(s)	277
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstC8I	GCNNGC	2 cut(s)	453, 879
BstDEI	CTNAG	3 cut(s)	11, 24, 78
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstKTI	GATC	5 cut(s)	10, 30, 298, 601, 845
BstMAI	GTCTC	2 cut(s)	502, 605
BstMBI	GATC	5 cut(s)	7, 27, 295, 598, 842
BstMWI	GCNNNNNNNGC	6 cut(s)	65, 74, 200, 488, 563, 587
BstNI	CCWGG	3 cut(s)	19, 246, 630
BstSCI	CCNGG	3 cut(s)	17, 244, 628
BstSFI	CTRYAG	2 cut(s)	483, 501
BstSLI	GKGCMC	1 cut(s)	529
BstV1I	GCAGC	4 cut(s)	52, 233, 352, 565
BstX2I	RGATCY	3 cut(s)	7, 27, 842
BstYI	RGATCY	3 cut(s)	7, 27, 842
BsuI	GTATCC	1 cut(s)	142
BsuRI	GGCC	3 cut(s)	527, 547, 803
BtgZI	GCGATG	1 cut(s)	184
BtsI	GCAGTG	3 cut(s)	61, 102, 328
BtsIMutI	CAGTG	4 cut(s)	61, 102, 266, 328
Cac8I	GCNNGC	2 cut(s)	453, 879
Cfr10I	RCCGGY	1 cut(s)	677
Cfr13I	GGNCC	4 cut(s)	412, 525, 526, 545
Csp6I	GTAC	1 cut(s)	186
CspCI	CAANNNNNGTGG	2 cut(s)	378, 413
CviAII	CATG	1 cut(s)	637
CviQI	GTAC	1 cut(s)	186
DdeI	CTNAG	3 cut(s)	11, 24, 78
DpnI	GATC	5 cut(s)	9, 29, 297, 600, 844
DpnII	GATC	5 cut(s)	7, 27, 295, 598, 842
Eco130I	CCWWGG	1 cut(s)	464
Eco24I	GRGCYC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	459
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoO109I	RGGNCCY	2 cut(s)	525, 526
EcoRII	CCWGG	3 cut(s)	17, 244, 628
EcoT14I	CCWWGG	1 cut(s)	464
EcoT38I	GRGCYC	1 cut(s)	529
ErhI	CCWWGG	1 cut(s)	464
Esp3I	CGTCTC	1 cut(s)	605
FaeI	CATG	1 cut(s)	640
FatI	CATG	1 cut(s)	636
FbaI	TGATCA	1 cut(s)	598
Fnu4HI	GCNGC	4 cut(s)	66, 222, 366, 579
FriOI	GRGCYC	1 cut(s)	529
Fsp4HI	GCNGC	4 cut(s)	66, 222, 366, 579
FspBI	CTAG	8 cut(s)	204, 465, 587, 662, 726, 839, 866, 872
GluI	GCNGC	4 cut(s)	66, 222, 366, 579
GsaI	CCCAGC	1 cut(s)	545
GsuI	CTGGAG	3 cut(s)	104, 477, 498
HaeIII	GGCC	3 cut(s)	527, 547, 803
HapII	CCGG	1 cut(s)	678
Hin1II	CATG	1 cut(s)	640
HinfI	GANTC	1 cut(s)	740
HpaII	CCGG	1 cut(s)	678
HphI	GGTGA	1 cut(s)	730
Hpy166II	GTNNAC	1 cut(s)	534
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	2 cut(s)	477, 726
Hpy8I	GTNNAC	1 cut(s)	534
HpyAV	CCTTC	4 cut(s)	206, 415, 434, 509
HpyCH4V	TGCA	4 cut(s)	40, 54, 87, 689
HpyF10VI	GCNNNNNNNGC	6 cut(s)	65, 74, 200, 488, 563, 587
HpyF3I	CTNAG	3 cut(s)	11, 24, 78
Hsp92II	CATG	1 cut(s)	640
Ksp22I	TGATCA	1 cut(s)	598
Kzo9I	GATC	5 cut(s)	7, 27, 295, 598, 842
LmnI	GCTCC	3 cut(s)	123, 129, 479
Lsp1109I	GCAGC	4 cut(s)	52, 233, 352, 565
LweI	GCATC	1 cut(s)	478
MaeI	CTAG	8 cut(s)	204, 465, 587, 662, 726, 839, 866, 872
MalI	GATC	5 cut(s)	9, 29, 297, 600, 844
MboI	GATC	5 cut(s)	7, 27, 295, 598, 842
MboII	GAAGA	1 cut(s)	221
MflI	RGATCY	3 cut(s)	7, 27, 842
MhlI	GDGCHC	2 cut(s)	385, 529
MluCI	AATT	4 cut(s)	240, 306, 446, 624
MmeI	TCCRAC	2 cut(s)	313, 431
MnlI	CCTC	4 cut(s)	266, 354, 784, 830
MseI	TTAA	1 cut(s)	278
MslI	CAYNNNNRTG	1 cut(s)	503
MspA1I	CMGCKG	1 cut(s)	455
MspCI	CTTAAG	1 cut(s)	277
MspI	CCGG	1 cut(s)	678
MspR9I	CCNGG	3 cut(s)	19, 246, 630
MvaI	CCWGG	3 cut(s)	19, 246, 630
MwoI	GCNNNNNNNGC	6 cut(s)	65, 74, 200, 488, 563, 587
NdeII	GATC	5 cut(s)	7, 27, 295, 598, 842
NlaIII	CATG	1 cut(s)	640
NlaIV	GGNNCC	6 cut(s)	119, 526, 527, 546, 676, 818
OliI	CACNNNNGTG	1 cut(s)	503
PfeI	GAWTC	1 cut(s)	740
PflMI	CCANNNNNTGG	1 cut(s)	830
PfoI	TCCNGGA	1 cut(s)	244
PkrI	GCNGC	4 cut(s)	67, 223, 367, 580
PsiI	TTATAA	2 cut(s)	572, 810
Psp6I	CCWGG	3 cut(s)	17, 244, 628
PspFI	CCCAGC	1 cut(s)	541
PspGI	CCWGG	3 cut(s)	17, 244, 628
PspN4I	GGNNCC	6 cut(s)	119, 526, 527, 546, 676, 818
PspOMI	GGGCCC	1 cut(s)	525
PspPI	GGNCC	4 cut(s)	412, 525, 526, 545
PsuI	RGATCY	3 cut(s)	7, 27, 842
PvuII	CAGCTG	1 cut(s)	455
RsaI	GTAC	1 cut(s)	187
RsaNI	GTAC	1 cut(s)	186
RseI	CAYNNNNRTG	1 cut(s)	503
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	4 cut(s)	66, 222, 366, 579
Sau3AI	GATC	5 cut(s)	7, 27, 295, 598, 842
Sau96I	GGNCC	4 cut(s)	412, 525, 526, 545
ScrFI	CCNGG	3 cut(s)	19, 246, 630
SduI	GDGCHC	2 cut(s)	385, 529
SfaNI	GCATC	1 cut(s)	478
SfcI	CTRYAG	2 cut(s)	483, 501
SinI	GGWCC	1 cut(s)	412
SmiMI	CAYNNNNRTG	1 cut(s)	503
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	4 cut(s)	240, 306, 446, 624
SspI	AATATT	2 cut(s)	646, 889
SspMI	CTAG	8 cut(s)	204, 465, 587, 662, 726, 839, 866, 872
StyD4I	CCNGG	3 cut(s)	17, 244, 628
StyI	CCWWGG	1 cut(s)	464
TaqI	TCGA	1 cut(s)	427
TasI	AATT	4 cut(s)	240, 306, 446, 624
TfiI	GAWTC	1 cut(s)	740
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TscAI	CASTG	4 cut(s)	61, 109, 266, 328
TseI	GCWGC	4 cut(s)	65, 221, 365, 578
TspDTI	ATGAA	2 cut(s)	625, 760
TspGWI	ACGGA	2 cut(s)	285, 425
TspRI	CASTG	4 cut(s)	61, 109, 266, 328
Van91I	CCANNNNNTGG	1 cut(s)	830
Vha464I	CTTAAG	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	412
XagI	CCTNNNNNAGG	1 cut(s)	419
XapI	RAATTY	2 cut(s)	306, 624
XbaI	TCTAGA	1 cut(s)	725
XmaJI	CCTAGG	1 cut(s)	464
XspI	CTAG	8 cut(s)	204, 465, 587, 662, 726, 839, 866, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.